Array 1 116514-114362 **** Predicted by CRISPRDetect 2.4 *** >NZ_POPE01000277.1 Streptococcus suis strain 380 SS_0380_Contig277, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 116513 32 100.0 35 ................................ AGGTTGGAATGCTCCTGCTTTGCTCTGCCGAACAT 116446 32 100.0 35 ................................ TTATCCGTCATACCGTCCTCGATTGTGAAGGTCAC 116379 32 100.0 33 ................................ ACTCACTGTTGCAACAACTTGTCCAGTTACCTG 116314 32 100.0 35 ................................ TAAGAAGTTATCTAACAACCTTGAAGAAAAGAATA 116247 32 100.0 34 ................................ TAAAGAAGATTATGAAGAAGTTTATTTTGGTACA 116181 32 100.0 34 ................................ CTTGTTTGATGGTGATACAGACCCATTTGCATAA 116115 32 100.0 34 ................................ ATGAAAAATAAGCGAAAATAAAAAGACATTTTCC 116049 32 100.0 34 ................................ TCTTTATAGAAGCGTTTTTTTATCTTATGTTTCA 115983 32 100.0 33 ................................ CAACTGAGCCGTCTGTCCCAACAACCCCTACGG 115918 32 100.0 35 ................................ TCGGAGTTAGGCACCTTGTTCTCGGAGTTAGGCAC 115851 32 100.0 35 ................................ ACCTCATACTCCGTTGCACCACACTTGGCAAACAA 115784 32 100.0 35 ................................ ATTGTCATTGTTTGAAAATATCCATTTCTGGTACA 115717 32 100.0 35 ................................ AACCAAATCAAGGCTTTTTTTGTGCCCAAAAACCG 115650 32 100.0 34 ................................ AGCAATTACATACTGTTGATTGTAGTACGCCATG 115584 32 100.0 34 ................................ TTTGCTTCGGTAGGGATAATAATGCCATCCGCTG 115518 32 100.0 34 ................................ TTATATTGATGAAATTCTTGCGCAAGCACGTTTT 115452 32 100.0 35 ................................ AACGAGGTTTTTAAAGATATGCAACTTATCCCCGA 115385 32 100.0 35 ................................ CAATTCCTCGCCCGCCAATGATAAAGTTAAGATAC 115318 32 100.0 34 ................................ ATTATATGTGTGTTGTGAAGGTCAGCTCTCAAAA 115252 32 100.0 33 ................................ TAAAAATACTGATCATCAAACCTTTTGAATAGC 115187 32 100.0 35 ................................ ATGAACCAAGAAAGTAAAGCAAGCACGTTCCAGCG 115120 32 100.0 33 ................................ TTGAATGTGACTTGTTTGTCTCCAATGTAGATA 115055 32 100.0 34 ................................ ATTCCATTTTTTTACATAGGAAATGACCTTGGGA 114989 32 100.0 34 ................................ TGGGAACGGAACTGACATCTTACCTGAAATAGAA 114923 32 100.0 34 ................................ CAGAAAAGCTCATATCATTAGACCGCTTTTCTTT 114857 32 100.0 36 ................................ ATCGATACGGTAGGTCTTGCCTTCCGGAGTCACGAT 114789 32 100.0 33 ................................ ATCTGCAATATCTTTTAACTCACGAATATGTTC 114724 32 100.0 34 ................................ GTTGAAGGGCGAATGGGGCTACCACAACTATCAA 114658 32 100.0 35 ................................ TAAGTGGATGCCAAACTTTCCTGTCATTGTAAAAC 114591 32 100.0 34 ................................ AGACTGGAAGAGTTCATAAACTTCATTATTTCCG 114525 32 100.0 34 ................................ AATAATGCCACCTAAGATTTTTAAGACAGCACCT 114459 32 96.9 34 ..............................G. AACGTATCGACAGACTAGCTGCTCGGACGGACCG 114393 32 78.1 0 ....T......TG..TA.....A........C | ========== ====== ====== ====== ================================ ==================================== ================== 33 32 99.2 34 GTCGCACTCTTCACGAGTGCGTGGGTTGAAAT # Left flank : GCAAAGGCTATTCGAGGGGAGTTGGACAGTTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGACAACGTGTGCAACATTCTGTTTTCGAATGCTCAGTCACCCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGATAAGGAGCAGGATAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGACGAGATACTAGTTATGATCCTGATCAAGGAGTCCTTCTGTTATAGATTATCTCTGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGTATATGAAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATAGCGCT # Right flank : TGTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCACAATTTTCGAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAAATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACTGCATACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCAGAAGAAGGGCTACAGATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTTGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAAAGGCGGTGGTGCAGCGCTTCTCATGGAGAAAGTGGTCGCGGTCAACAGTAAGGACTGCATCTGGATTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCACGAGTGCGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //