Array 1 838368-838201 **** Predicted by CRISPRDetect 2.4 *** >NC_015978.1 Fructilactobacillus sanfranciscensis TMW 1.1304, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 838367 35 100.0 31 ................................... CGTGGTTCTGCAAGAGTCGGCTATGCCCTTT 838301 35 100.0 31 ................................... CAGTGGATTGGCCCACAATTTACTTTGACGA 838235 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =============================== ================== 3 35 100.0 32 GTTTTAGAAGTACGTCATTCTAATGAGATTAAGAG # Left flank : TAGTGACTGATACTGAGCAAACCCTAAAATTTAAAACAAAAATTAAAAATGATGTATTAAATAATCTAAATGATGATAATCGAAAACGGTTATTTCAACTCGATGCAGAAATGAAAGAGATTTTTTTAGGTGCCGCTTATTTAGATGATTTCCCCATCCAAGTTGATGAAGATTGGGATATTAATAAACAATATGCATATACAGGTACTAAATTGTTGAATGTGAATCATGATAATCCATATGATATAATTAAAGAAGTTCTTAATTTATATGCGAAATTTGATTCAAAAAAGTTGTTAGTTCTTAAAAATCTATTTAATTATTTGTATTCCAATCAGATTGAAAGTCTGGTTCAAATGATTAAAACTTTAGAATTGAACGTACTTATTTTAGATTTTTCAAGTGAAGATTATTCCACTTTTCTAGAAGAATGCCGTTATTACTGCATTGACAGAGACTTTGTGAGATGGGATTCTGCTGATAGGTGAATATTACAGACG # Right flank : TAATAATGTTTAAATTTAATATTGATACATCTAAACACAAAAAAGAAATATACTTTAAAAATTTCTAATATTTTGATTTTAATAATAATTTTAGCAATAATTTGTTTTAAGTTAGCTATGCAATTATAATTGCATGATCAATAATAAGTTCACCATAATTAGGTGGACTTTTTTAATACTCAAAAATCACATCATATTAAAATCTTGGCATGCATCATAAATGTTACTTATGTAAACTATAGGAAAATTTAATAAATTTAGTAAAAACCATTTAAAAGAAGATTAAAATACAATATACTAAAACAATATAAGTGATTAATCACACAATGAAGGAGGAGTTTACATTTATGAATAATGAAAAACAAAACAGCTCAAGTTTAATTTCACGTTTAGAAAATTTTAAAATCGATGGTTTCGGTTTAGTTTTCTACGCTATTATTGGAATTATCTTTGTAGCTGCTGTTTTAATTCACGCTTTGCCTAATGATATTTTAGGAGCT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGTACGTCATTCTAATGAGATTAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 28011-28903 **** Predicted by CRISPRDetect 2.4 *** >NC_015979.1 Fructilactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28011 29 93.1 33 ......T.....................C ACGGCACACTCGTATTCTGGATAGGCTTTTTTG 28073 29 100.0 33 ............................. GGAATTGACGGCTACCATGCTTCTGCCGACATG 28135 29 96.6 32 ............................C GTCCCACGCAAGTCAGTCGCAAATTGTACACG 28196 29 100.0 33 ............................. CAAGTCTTGCGAATCATTCAATCCTTCGCCTTG 28258 29 96.6 32 ............T................ TTCTTCATGTTTCTGCTCGGCTGTGGCTCTAA 28319 29 96.6 32 ...........A................. ATCATGGCGATGAATTTGAAACTCAAAAATTA 28380 29 100.0 32 ............................. ATCTTTTTTTCGTGTTCAAAAAATTCCTTTCC 28441 29 100.0 33 ............................. TAACAGTTCTCATGGTATTTTGAGATATACATA 28503 29 100.0 33 ............................. ACTACTTGAAATGACGTACCTACAAAACCGATG 28565 29 100.0 33 ............................. AAAATTGAAAAACTTGAAGAAGCACTTGTTAGA 28627 29 100.0 32 ............................. ACTCATAAAACAAGCCTACAAGTTGAATTTGA 28688 29 100.0 33 ............................. ATAAATGTAATGAAAAGTGAGAGGGGGCTTAAA 28750 29 100.0 33 ............................. AAATTTTTCAGTTCACGCTTTTGGCTTTCATCA 28812 29 100.0 33 ............................. AGCAAGTACAGCATTATCTTATATCGTTGGTTA 28874 29 89.7 0 ..........................GTA | G [28897] ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.2 33 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : TTTGTTCGTGTTGGAAAATTTAGCTGGAGTTACTTTTGAAAAAACTAATTCTAACAAGAATCAAACTAGAGAATTACATTCATGGGCTTTTTATGATTTACAAACCAAATTAGCTTACAAAGCACGGAAAAATCAAAGTCAGGTCTTGATTGTATCAGCTAAATATACTAGCCAAAGATGCCCTAAATGCGGTCAAATCAGAAAAGAAAATCGTAATCATAAAATACATCGATACGACTGTGTTTTCTGTGGCTTTAAAACTAATGACGACCGGGTTGGAGCTATGAACTTGTACGAATTAGGCAAACAATATATTTTCGGAATCGAAAATCCTAAATTTGAATTAACTAACGTTACCGACTGATATGTTGGTAATCTAGGGTGCTGTCAACCACCCAAATGTAGCCACGTATAGTGTGGGAGCAATAAAGTTGCGTTATGACCACTGACCGCAAGGTCGTGAGTTACAAGCCTCTCACTTTAGTGAGGGGTAGTTGACT # Right flank : AAGCTGATTCCTGAGACAACTTTTAAGAGAGCGTATAATGAATAAATCGTCTCTCAAAAGGAAGGAATTTTTACATGCCAACTCGTTACGACAAAGAATTCAAACAAAACATCATCAACCTATATAAACAAGGCGAATCAGCCGCCCAACTGGCCAGAGAATATGGCATTGGCTATTCAACCGTTCATAAGTGGATCCAGGGCCAAGCCAAAACTCAATCCGGTAAATCGCCAGACGAAATTAAAGCGATGGAAAAGCGGCTGGCTTCCCTGTCTGAGGAGAACGAAATCCTAAAAAAAGCCCTGGGCTTCCTTGCGCAGAAGTAACCAATATTTTTGATTACATTCACCAAGAAAGCCATCACCACCAGGTAACTAAGATGTGCCGAATCCTCGGTGTTTCCAGAGCTCAGTATTATCGTTATCGATCCCCAAAGCCTTCAAAACGCCGGGCCGGAGATGTGGGCTTAAAACAACGGATTCTGCGGATCTTTGCGGAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //