Array 1 361556-363109 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXCA01000001.1 Salmonella enterica strain BCW_2518 NODE_1_length_486999_cov_4.15652, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 361556 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 361617 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 361678 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 361739 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 361800 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 361861 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 361922 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 361983 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 362044 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 362105 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 362166 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362227 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 362288 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 362349 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 362410 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 362471 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 362532 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 362594 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 362655 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 362716 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 362777 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 362838 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 362899 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 362960 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 363021 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 363082 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 379242-380718 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXCA01000001.1 Salmonella enterica strain BCW_2518 NODE_1_length_486999_cov_4.15652, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 379242 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 379303 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 379365 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 379426 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 379487 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 379548 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 379609 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 379670 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 379731 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 379792 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 379853 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 379914 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 379975 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 380037 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 380140 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 380201 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 380262 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 380323 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 380384 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 380445 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 380506 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 380567 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 380628 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 380689 29 96.6 0 A............................ | A [380715] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //