Array 1 2089327-2090851 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027013.1 Akkermansia muciniphila strain EB-AMDK-38 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2089327 31 100.0 34 ............................... CAAAAGATACCAAAAGAATCCAAAAGAATACAAA 2089392 31 100.0 34 ............................... TTCACAAAAAACCCGATAGGAGCCGCAATCGGAT 2089457 31 100.0 33 ............................... CCGTTGCATGGTTGCAATGGGATGACGCACAAG 2089521 31 100.0 34 ............................... CTCACAAAAATCCCTGTATGAACCGCAATCTGAT 2089586 31 100.0 34 ............................... GATATCTTGCCCTGGGACGTTAAACCCGCCCTTG 2089651 31 100.0 34 ............................... AACATTTCCGGCGGGGCTGACGGTGGAATAGGCA 2089716 31 100.0 34 ............................... TCTTAATTTTGCGAACCAGATTCACAGTCAGTTT 2089781 31 100.0 34 ............................... ATTTTCGGATTGTTGCTTGTCATAGTTGTGCAGG 2089846 31 100.0 34 ............................... AAATGGGAGGGGGTACTTTATAATGATTGGCAGA 2089911 31 100.0 34 ............................... GTTGGCGTAAGTGAAATACCTTGCCCCCGCACCG 2089976 31 100.0 34 ............................... GGCGGGGGTTAGATAGTAGCGGTGGACGAAAAAC 2090041 31 100.0 34 ............................... CTCTGTTATTTACCCTACCAGGGGCGTTGAGACA 2090106 31 100.0 34 ............................... TGCCTCTGCGTCAGCTCATTGACGTCAAACTTAA 2090171 31 100.0 34 ............................... CGGAGGGTCAGCTAGCTTCACCTGCAACGGAATC 2090236 31 100.0 34 ............................... CCGCGTGATTGTTAGGCAGGACTTACAAAGTTAA 2090301 31 100.0 34 ............................... CGGGGACGGGGTAGTGGACGATATTACCGCCCTT 2090366 31 100.0 33 ............................... ATCCAGCAGTGTTAAAATCTCCCAATCATCCCA 2090430 31 100.0 34 ............................... CATGTGGAACAATTTGAACCCGTTGAACCCGTTG 2090495 31 100.0 35 ............................... ATGGGGCCTGCGAGTTGTCCCACTGCAACCATGCA 2090561 31 100.0 34 ............................... GCATAATCCTACCCACGGAAATGGTATGGCGTGA 2090626 31 100.0 34 ............................... TAAAAAGATAGTAGCTTGAGGCAGGGCATTTACC 2090691 31 100.0 34 ............................... TCCAACAACCCTATAACAATATAAACATCATAGA 2090756 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 2090821 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== =================================== ================== 24 31 99.6 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGAGGAAGACAGGTCAGTTGACTGCCATTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTGCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGGCCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCTGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2630931-2628884 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027013.1 Akkermansia muciniphila strain EB-AMDK-38 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 2630930 33 100.0 34 ................................. CTCTCTAAAAACCAACGGGTTACGATTGTGTCAT 2630863 33 100.0 35 ................................. CGCCGTTATCTATCCCACCGGGGAACTAGTGACAA 2630795 33 100.0 34 ................................. CGGTGTTCCAGGCGTCTTCCAGCGCCTCGATATG 2630728 33 100.0 34 ................................. ATCAAAGGGAGGAAAGCTCCTAAGAGAAAAAACA 2630661 33 100.0 34 ................................. AGCGGGTGTGAGGTAGTAGCGGTGGACGAAAAAC 2630594 33 100.0 34 ................................. ATTAACCGGGTGCGCTGGACAGAAGAATCTGAAG 2630527 33 100.0 34 ................................. ATTAACCGGGTGCGCTGGACAGAAGAATCTGAAG 2630460 33 100.0 34 ................................. TGTGCCGTTGCCGGACCCTCGGAAATAGTCATCA 2630393 33 100.0 35 ................................. CCCCGCAACAATAAACTAAAAGAAAGGAAAACTAA 2630325 33 100.0 34 ................................. CACTTTGACGTTGCCCCCGCCCTTGAGGATTTGG 2630258 33 100.0 34 ................................. ACCCTTTAAGAATTAGGAACTTACGATTGTGTCA 2630191 33 100.0 34 ................................. TAGACGCTGAATAACTACGCCGCCCTATAAAACC 2630124 33 100.0 34 ................................. CCCGGACTTTTACGAGGATGCGGGCCTGTATGCT 2630057 33 100.0 34 ................................. CGTCGCGCGTGCCAGGCCATGACGAGGGCGTCGG 2629990 33 100.0 34 ................................. GATATGCGGGCAGTCCTCGTATTTGACGCGGATT 2629923 33 100.0 33 ................................. AACCCCCGGCACCCCCGGATACCAAGGAATCCA 2629857 33 100.0 34 ................................. CCCGCCGAGCTATTGATTGCCTTGACGAAGTAAC 2629790 33 100.0 34 ................................. CGGGCAAAAAAAGTGTGGCATCGTCAATACTGCT 2629723 33 100.0 34 ................................. CGCGGTACGGGCAACGGCACGAAAGAATACGGTG 2629656 33 100.0 34 ................................. TACGAGGGGGCGGGCCTTTTCGCTTACATTGAGG 2629589 33 100.0 33 ................................. GGCTCAATACACGGCAACGGCGGCAAGTGGCTT 2629523 33 100.0 34 ................................. TCGCATGCGTGTGCAAGTCCGATTGTGGTTCCTA 2629456 33 100.0 34 ................................. GGCCTGGCCGGTCAACTGGCTGATCTGCCAGCCT 2629389 33 100.0 37 ................................. CCCGCGCATACTCATGACTTGCGCCCGTGTACGCGCT 2629319 33 100.0 33 ................................. CCCGGTATCCGGGGGTGCAACGGAGACCGGGGA 2629253 33 100.0 34 ................................. TTCACAGAAAACCCTGTATGAGCCGCAATCTGAT 2629186 33 100.0 34 ................................. TATTGGTTTATTGTTGTTTGTTGTGTGGGGGCTT 2629119 33 100.0 34 ................................. GATGAAATAAGCATAACGTCATAAGCTCCAATCC 2629052 33 100.0 34 ................................. TATGAAACGCCAGAAGAAGAAAAATTAGCCCTAG 2628985 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [2628962] 2628916 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= ===================================== ================== 31 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //