Array 1 290950-291910 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023074.1 Enterococcus thailandicus strain a523 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 290950 36 100.0 30 .................................... AGCTGGATCTTTATCAGGTAATCCCGTAGT 291016 36 100.0 30 .................................... AGATTTCCGTTTCAGTAAAACAACTGGTAA 291082 36 100.0 30 .................................... GTCAGTAAGAATAGATACCCCCTTGATCGT 291148 36 100.0 30 .................................... TACGTATTGTGTCTTGATTTCTATCCCAAC 291214 36 100.0 30 .................................... TGCCACAAATGAAATTGAATGTGTCTAGTC 291280 36 100.0 30 .................................... CCTCGCCAAGATGGTGGAACTCCATCTACT 291346 36 100.0 30 .................................... GTAGAAAACCAGTTGATTCTTACTCTCCCA 291412 36 100.0 30 .................................... TAAAGTTTGTTTTCAACAATGGGGTTACAA 291478 36 100.0 31 .................................... CTGGCAGTGGTTGTGGTGGGCGTTCGTGGTA 291545 36 100.0 30 .................................... TTGCTTGTTATCATCTTTTGGTTCTGCTTT 291611 36 100.0 30 .................................... TGCCACAAATGAAATTGAATGTGTCTAGTC 291677 36 100.0 30 .................................... CAATTTTTGTTCCAACTCATCAGGTGGAGT 291743 36 100.0 30 .................................... CAAAAGCCAAAAATTTCTTAGGTCTTCTGT 291809 36 100.0 30 .................................... TAAAATTACAATCAATTCCTCTTTGTTTAC 291875 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Left flank : CAGAAATCAAAACCAAAATTGATCGTTTGTCGATGGAAATTGCCAAAGTGATGCAACACGAATTGTTAGAACATGCGCTAGATCTTGAAGAAGATGAGTTGACCCTCATGGAGATATTTAAGTGCTTAGGAATACGGATTGAAACGAAAAGTGATACCATTTTAGAAAAAATGATTGAAGTAATCCAAGTATATCGTTATCTAGTGAAAAAGAAGCTATTGGTATTCGTGAATGCTTGTTCTTATTTAACCACGACAGAATTACAAACATTAATTGACCATATTTCTTTATACAATGTAGATGTATTATTTTTAGAACCTCGACCAATTGAGGGTGTTGCACAACAAATTCTAGACCAAGATTATTTTTTGACAAGAAGATAACAGATAGGACTAATTTTTTCGTTCTTTGACAAGTAAATCAAACCAATGAAGCATTCAGGCTAAAGCCTTGCTATGGGCGAATAGTGCGATTACGGAACCTCAAAAATTTGAGCCGAG # Right flank : CGACTATTTTGAAAGTAGTTCATAATCCACTGTTTTAGAGCTATGCTGTTTGACGGACAAACTCATCTGTTTCTGAAAGCAAGCAGTACAACATTCATACGATCAAATAAAAAAAGATGTAACAAATGGAAAAATAACAATGATTGAAGATGCAAAAAATTTTGAAGGAAATCCAGTGGTGAGGGTTATAGCACAAACAAGTAAAGAAGATGTCGGAAAGAGTGACACGCTAGGACGAAGCGATTTCCAGTTCCTAGGTGCTAATACTGAATGATTTACACTGCTACTTAGCAAATAGATAGGCAAAAAAAGTGTAAAGGAAGTATTTATGAAAAAGGTTGTTGTTACACTCATAATAATAACTACCCTTGTCGTAGGATTTCTTTTCGTAGGCGCTAAACATACAGAAAATCTACTACAAAATAAGGTTGAAAGTACCACTACAAGTGATGAAGAGGCAAATGACAGTTCAATCCAGTTCAAAATTATTGATTCAAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1028020-1028584 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023074.1 Enterococcus thailandicus strain a523 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1028020 36 100.0 30 .................................... TCGCACTGACGACCATATCTACCTTTGATA 1028086 36 100.0 30 .................................... TTCAAAGATTTTCTTTTCAACTGGTGTGTC 1028152 36 100.0 30 .................................... AAATAAAGTAAAGGAGATACTATCTAAGTA 1028218 36 100.0 30 .................................... TAATACTTGTTTAATGTTTTGCGCCACCCA 1028284 36 100.0 30 .................................... CGAGGTAATGGAGTATTATCATGCTAAATA 1028350 36 100.0 30 .................................... CGAGGTAATGGAGTATTATCATGCTAAATA 1028416 36 100.0 30 .................................... TCCTGAGTTCGCAGAAGGAATACTTCGACC 1028482 36 100.0 30 .................................... TTAGTTTCACTCTTGCATTTAATGGAAAGC 1028548 36 88.9 0 ..........................T.A.....TT | G [1028576] ========== ====== ====== ====== ==================================== ============================== ================== 9 36 98.8 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : CGTGATCCACGTGTTGAAAACGTAACGATCACGGATGTACATGTAACAGGTGATTTGCAACAAGCAACCATCTATTACAGCATCTTATCTGATCTTGCTTCAGATAAGAAAAAAGCTCAAGAAGGTTTGAGTAAAGCAAGTGGGCTCATTCGTCGTGAATTAGGTCATAACCTAAGCATTTACAAGACACCTGAGCTAATCTTTGAATTAGATGAGTCTGTCGGCTATGGTAACCATATCGACGAGCTGCTGCGTAATTTGAATAAGGACTAAACAAAAAGAGTAACAAGCCTGGTATATCAGGTTTTGTTACTCTTTTTTTATTTAGATTAAAAAATAAAAATTTATTCGCAAAATTATTGGGTAAGTAGTTCCTATGTTATAATGAACAAAAAAGACGCTCTTTGAAATAAAAATATTCAAGCTAGATGAGCATTCAAACTGAAGTTTTGCTATGAACGAATAGTGCGATTACGGAACCTCAAAAATTTTTAGCCGAG # Right flank : TGATAGAGAAATTAACCAAAACATTACCCATTTATTGGGTAATGTTTTTTTGTTATAATGAGGTGAATGTGGTAAGAGATTTTCTAGAAATTTTTGTATCTTTTGGATTGATAAAAAAATAAAAGGATGTGGCGATAATGAAAAAGATAATTGGGTTAAGTGTGATTGGCATGACTTTGTTTCTTGCTTCTTGCGGGAAAAATGAGCAAGTAACTTCAAGTAAAACGTCACAATCGACGGTTCAAACGAGTGAAACAACAACAACAACGACTGTCTCAGAAACGGCAACAAGTGATTCAAACACAGAAACAGTTGTTGAAGAAACGAATTCAACTGTAACGACAACACCAGCGAGTTCAACAGGTCAAAGTACAAATGCATCAGCAACAAACTCAACGAGTGAAATGCCTTCCTTTACACCAGAACAAAAACAAGCACTAGATGCTATTTACGAAAAATATCCAAAGTATAAGGATTCAGATATTGCTTTTATCTTTTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 1269063-1269560 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023074.1 Enterococcus thailandicus strain a523 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1269063 36 100.0 30 .................................... TTGCGCTGACGATCTTGAAAGCGACAAGGG 1269129 36 100.0 30 .................................... GTTCTAAGACAAATGCGTAAAATTGTTCTA 1269195 36 100.0 30 .................................... TAAAAAGTTTTTCAACCCTCCCACGGATTG 1269261 36 100.0 30 .................................... TACGTTCCATTTTCAAACGCAATTATATTT 1269327 36 100.0 30 .................................... AGAACGAGTAGAAAAAGCCCTTGAAGTGCT 1269393 36 100.0 30 .................................... TGGCGTATTAAAGAAAAGTGACTATAGGCT 1269459 36 100.0 30 .................................... GTCTCTAATGAGTTGGGCAAGTTGTTCGCT 1269525 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : TATATTTTTTCTTGTTGTGCGTATGACTAAAGCCAATAACACTGACAAAAAAGAAAATTGTTGCGACAGGTCTACCAAACCAGTCTAGCCAGTTAGGTGCTCCAAATGGAACAAACATCTGATGGATATGATCAATAAACATTAAGACAATGCCTAACATCTTTAAATCAAATGTTGATAGGCCTTTTTTGGGTGTATCAATCGTCAAAAATAATTCCTCCTAACTAATAATAACTATATGTTAACAATATGATTGATTGAAAGGCTAGTGAAGTAATATAGAACGAGCGAACAATTTTGTCACAAGAGATTTTTTTGTTATCGATCATATACTGGTCTTTATGAGGAAAGAGTTGGGTAGTTGGGCTAGTGAATTCATGGTATACTAATAAAAAAGATCCTTGAAATCTAAATAAATAGATACCAATAGAAGCATCCAAACTGAAGCCTTGCTATGGGCAAATGGTGCGAGTACGGAACCTCAAAAATTTTGAGCCGAG # Right flank : CAATAGAAAAGAAGGTTTTTCAATGCTCTACCTGTGTATATTTAGGGTATACTCAAAATATATGATAATGTTCTATTTATTGATAATTATCTTCCTTAATTTTGAAATGGCAGAAATCGATATCAATGAGAGGATAGATTTTTTCTTAATCCTAAAAAAATTGAACAACAATTTCCGGAGTTTTTTAAAATCTCTGAGTTGTACTATTTGAAGGGAAAAATATGTTGGATACTAGAGAGTATGAGCTAAAGCTGCAGCAGCCGTAGATTTTCCTTGTAAAAAGGTTATTAAAGGTTTAAAAAGAACGCTTGAAAGAAATTGGAATACCAGTTCCAGAAATATATCAAGATAAAATAAAAAAGATGTAGCCGAGCAAATGCTTTGAAGAGGGTATAAATCCTGAAGATTATTAGGCTATAAGATTATATAGTTAAATATTAAATGTTATTTTTTGTGAGTGTACATACTTAATAAACCTTGTTTTTTAGCGTGTTTAGGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 4 1281532-1281831 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023074.1 Enterococcus thailandicus strain a523 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1281532 36 100.0 30 .................................... AAAACTGCATCAGTGTATTCAATAGTAGCA 1281598 36 100.0 30 .................................... TGAGAGTAAAACAGCTTCATCATGTGTTTT 1281664 36 100.0 30 .................................... GCAATCTGTACGAATGAAGGCATACAAATT 1281730 36 100.0 30 .................................... TGAACTAATATGTACTGCCCCTCAATATTG 1281796 36 83.3 0 .............................A.TTTTG | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 96.7 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : TCTGTTCAACTATTTTTCGATCCAACGACCCATCAAATTTTGGGTGGAGCTGTGTTATCAACTTATGATATTACTGCTCAAGGAAATGTGTTAGCTTTAGCAATCCAACAAAAATTAACACTAGAAGATTTAGCTGAGGCAGACTTTTTCTTCCAACCAGGATTTGACCGTCAATGGAGTCTGTTGAACCTAGCAGCACAACATGCTTTAGCTGAAAAAGAATTTATTGAATAAAGCGAAAATTGAATCAACCTCCAAAAGTAGTCAAATGGACAGGTTTTTGGAGGTTGATTTTTTCATTTACAATCAAATGATAGCCAGTATAGTGAAAAGCTTATTGTTTTCCAACTATTTTCGTTGCAAACAAGGTTTCATGCTATACTAAAGAAAAGTGTTCCTTGAAATAAGAATAACCAATGACGTTAACGAAGAAGCATTCAAACTGGAGTCTTGCTATGGGCGAATAGTGCGATTACGGAACCTCAAAAATTTGAACCGAG # Right flank : GACTGAAACTGTCATTGTTTTAGTATGTGTTTATAAAAAGTAGCAGAAAGAATACGTGATATTGACTCAAGAATAACTGATGATAATTTGCAGTAAAAAAGAACGCAGTTTCATGTAGTTCCTTAAAAGTAGGGAGCTATTCATGAAACTGCGTTTTTTTGATACCTAATTTAATTAACGAATAGTACCTAGAAACATTTCAAAATTTTGCGTATCAGCTATTTTTTGTTGTAGTTTTCGGTCTTCTACAAGATCAGATAAATACTCAAAAAAAGCTTGGAGTTTGTCTTTGTCATCTTCAGCAACGGCAAGTAAAAAGATGATTTTTACGGTTGCATTCGGACGCCAAAAAATCGGTTCTTTTGAGATGTAAACAAAAATTTTTGTTTTCTGGATGGAGGCATCAATAGCATGAGGGATTGCGATCAACTCAGTGATATTTGTTGGTGCAATTTCTTCTCGATCAATCACTTTTTCAATAAAATCTTCAGCGACAATGT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 5 1295801-1295434 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023074.1 Enterococcus thailandicus strain a523 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1295800 36 100.0 30 .................................... AATGCCTTTACTCAAGCACACTTCGCATAA 1295734 36 100.0 30 .................................... GAGATATTGTAGAGACGGATGCGAGTGTAG 1295668 36 100.0 30 .................................... TGCTTAAGATGTAATGATGAAACCGTCATT 1295602 36 100.0 30 .................................... TGAGATTCAATTTTTAGATTCAAAAAGTAA 1295536 36 100.0 30 .................................... CCATACGATCCAAGAGTAGACTACAACAAC 1295470 36 88.9 0 ............................GG.T...T | A [1295443] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.1 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : TTTATTCGAGACCACTTAGCTTATCTTTGGAAAGCAATTGATGACGGCTGTAACATCAAAGGATATCATTTATGGACATTTATTGATTGTTGGTCATGGATCAATTCGTACAAAAATCGTTACGGACTAGTTTCCTTAGATCTACCTACTCAAAAAAGAACAATCAAAAAAAGTGGCGAATTTTATAAAAAACTAAGTGACGAAAATGGATTTAATTACGATATTGATTTGTTAGTTCTTTAAACAATTATATCCCTGTAGCTCAGACTCATTCAGCAACCAAAAACTGGTTATGACAGAAAGTCAGTTTATGCTATACTAAAGAAAACTGTTCGTTGACATTCAAATAGCCAACATATTACCAAATAAATAGAAAGAAGCATTCAAACTGAAGCCTTGCTATGGGCGAATAGTGCGATTACGGAGCCTCAAAAAATTTATCCGAGGTTTGTTTTGAATGCTTCCAAAACGTTATTGTTAGCAATAATCACGTACTTAGT # Right flank : GTATGATAAAAAAGGACCGCCCATTGAGAGCTGGTCCTTTTTTTGTTAAATTTTTTGATCAATTTCAGTGACAGTTATTTGTAGCACACGGCTTAAGAACGGAAACTTTTCCTTCATTTCATTAAAAATTGGTCCCCCTGTGATAAACTCAGCGGTTCCGTGCAAATGGAATCCTGCACCAGGTCCTACTGTACCAATGACTTCTTTGCTTCCAACGGTTAACATCACTTGATTATTTTTTTCGATATCTTGTTGAACACTGTGCATCCCAGCTGCAGGAATATATAATTTATCGCCACTGATTTGAACATAGCTATTCCAAGTGTTCACAGCATGAAAGCCCGGAGCATTTTCACTCGAAGAAATTATTGTTACTGCTCCCTCATGTCTCATTACCTCTAAAAATGTTTCATTCATCATTTTGCAGACCTCATTTCAATTATCGTAAGTTTATTATAGCACCACTAAGTATTTCGTTCACTTTCTAGTAATAAAAAAAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 6 1973995-1973628 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023074.1 Enterococcus thailandicus strain a523 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1973994 36 100.0 30 .................................... ACAAAGCGCCACCTGTCGTCCAAGCGCTCA 1973928 36 100.0 30 .................................... TGTGTGGAATAATATTAAAGACACATTACT 1973862 36 100.0 30 .................................... GCCAGTCACATAATAGTAATCGGTATATCC 1973796 36 100.0 31 .................................... TTATACGGACTTGCACGAAACCGATTCTTAA 1973729 36 100.0 30 .................................... AGATGTTGTATTAGATAATTGTATGGGTAG 1973663 36 91.7 0 ............C............A.......C.. | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 98.6 30 GTTTTAGAGCTATGTTGTTTAGAATGCTTCCAAAAC # Left flank : TGCAAATCCTTACTTGGCAATGGCCGTATTATTGCAAGCTGGTTTAGATGGTATCCGTCGTGAATTAACACCGCCAGATGCGGTTGACCGTAATATTTATGTGATGAATGAAGAAGAACGTGAAGCAGCGCAAATTCAAGATTTACCTTCAACGATTCACAACGCAATTAAAGAATTGCGTAAAGATGAAGTGATGATCGATGCACTAGGTCAACACATCTTCTCAAACTTTGTTGAAGCGAAACGTTTGGAATGGGCAGCTTTCCGTCAAACAGTTTCTGAGTGGGAAAGAGAACAATATTTAGAACTTTATTAAGTCAAAAAAGTAGTAAACACAGAGGCAATCTTTTGTCTCTGTGTTTTTTTCATCCATTATGTTTTGTTTCCCACAGGTTTATTTTCCCATGATATAATAAGAAAAAACAATTGTTGAAGTACTCTAACTGAAGTTTTGCTATGGACGAGTAGTGCGATTACGAAACCTTGAATTTTTTTGCGAG # Right flank : CAACAAATTTTTTTGAAATCGCAATCATCAAATTGATGTCTTGACTTTCAATTCTGGAGCTTGTATTATACTCCTTGGGCACCCTTTTAAAGGGTCAGAAGTTTACAGAAATTTCAGCTCCCTATTCTTGTTAGAAGAATAGGGAGCTTTCTTTATTTTTTCTGGGACTTTTCCTGCAGATAAAACAAGAAGGAGTTTTTGAATTTATGACAAAATACATTTTTGTAACTGGCGGCGTTGTATCTTCGATTGGTAAAGGGATCGTAGCAGCTTCATTGGGTCGCTTGTTGAAAAATCGTGGCCTAAAGGTAACTATCCAAAAATTTGATCCGTATATCAATGTTGACCCAGGAACAATGAGTCCTTATCAACATGGAGAAGTATTTGTAACAGATGATGGTGCGGAAACAGACTTAGACTTAGGACACTATGAACGTTTTATCGACATCAATTTGAACAAATACTCCAATGTTACCACAGGAAAAATCTATTCTGAAGTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTAGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //