Array 1 37374-38360 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHSM01000027.1 Pseudomonas aeruginosa strain PA_179 NODE_27_length_48042_cov_18.0502, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37374 28 100.0 32 ............................ TAATCCTGACAGGCCCGGTTCGCAGCCAGTAG 37434 28 100.0 32 ............................ TGGTTCAGGTCCAGAGTGGAGATGTTCGGGGT 37494 28 100.0 32 ............................ AGCCGGCCAAGCTGAGATCGAGGAGCACGCGC 37554 28 100.0 32 ............................ TGATCCCTACCGCGACTACTCGCTCGGCGCAC 37614 28 100.0 32 ............................ TCGGGAAAGAGACCATGACCATCGGTGAAAAC 37674 28 100.0 32 ............................ ATCCGGGCCTGCGCAGATCACCCGGCCAGCTT 37734 28 100.0 32 ............................ AGGCACTGCAGGCCTACCGGCGTACCCTGCGC 37794 28 100.0 32 ............................ TCACGACCTTCTCGAACGTTCCCAGGTACGTA 37854 28 100.0 32 ............................ AAGGTCAATTCCCAGGTGAAGCAACTGGTGGC 37914 28 100.0 32 ............................ GTAGCAGAGAAACTCAACAGCCCGACTGGACG 37974 28 100.0 33 ............................ GTAGGGATTGTGAGCGTCGAGGAGCGCCAGGGC 38035 28 100.0 32 ............................ TCGCATAATGGGCATTACGTGTAAATGCTCGC 38095 28 100.0 32 ............................ TGCAACTCGAAAACATCGAACGCCGGCGCCGA 38155 28 100.0 32 ............................ CTGAGCTAACCCGGCTGGGATCCAAATCCTAC 38215 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 38274 27 92.9 32 .....................-..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 38333 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAACACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47876-46884 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHSM01000027.1 Pseudomonas aeruginosa strain PA_179 NODE_27_length_48042_cov_18.0502, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47875 28 100.0 32 ............................ ATCAGCACCAGGGCGTCGCGGTTCTCGATCAC 47815 28 100.0 33 ............................ TCCTGATAGGCGCCGCCGTCGGTGGCCAGATCT 47754 28 100.0 33 ............................ TGACAAACCTATCGACGAACGAAAGCCCGCCCT 47693 28 100.0 32 ............................ ATTTTCGCCGACCGCCGACGCTCCGATTGCGC 47633 28 100.0 32 ............................ TGCGGGGTCAGTCCGCGGACCTTCCCCCCAAC 47573 28 100.0 32 ............................ TGGTGGAGCACGATCTGCTCCGCGCGCTCCGG 47513 28 100.0 33 ............................ AGGAACACGCTCGAAGTGTCCAGCACCCTTGGC 47452 28 100.0 32 ............................ ATCAATCGCTTGATCCCGTCTCGCATGAATGT 47392 28 100.0 32 ............................ AGTGCGGTCAGACCATTCACGCCACACTTGCT 47332 28 100.0 32 ............................ TCCCTGCACCGGAGTGGTATCGAGCAGCCAAT 47272 28 100.0 32 ............................ TTCCCCGGCGAGATCCAGCCGCCCCAGGACGG 47212 28 100.0 32 ............................ AGAACGAGCCACGGGTATCGGCCTTCGACTCA 47152 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 47092 28 100.0 32 ............................ ATGACTATCTCGTCGCTTGAGATTTGCAGCCC 47032 28 96.4 33 ....C....................... TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 46971 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 46911 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACTCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 408141-407093 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHSM01000006.1 Pseudomonas aeruginosa strain PA_179 NODE_6_length_408307_cov_19.4631, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 408140 28 100.0 32 ............................ TTTCGGGCGCGGCCGGTGAGCGACGATGGACG 408080 28 100.0 32 ............................ TTTCCCGCTCGACCGGACTCTGGACGCTGCGG 408020 28 100.0 32 ............................ GTCCGGTCTGCAGATGAACTACGCGCTGCTCA 407960 28 100.0 32 ............................ GTTTCCCGGCTGTCTGTTATCGCTGTGGTGAG 407900 28 100.0 32 ............................ AAGGGCAACGCTGGCCGTCACGGCCGCCGAAA 407840 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 407780 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 407720 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 407660 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 407600 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 407540 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 407480 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 407420 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 407360 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 407300 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 407240 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 407180 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 407120 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //