Array 1 34-306 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFS01000265.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2180 NODE_265_length_349_cov_2.70567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 95 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 156 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 217 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 278 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAATGATGAGGGGCTGGCAACGTTTAGCGCCACG # Right flank : GCCGTGCGTCAGATCACCCCAAACGCTTTCTTTGTGTTCCCCG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-209 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFS01000340.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2180 NODE_340_length_245_cov_1.37079, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 26 89.7 32 ---.......................... CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 59 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 120 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 181 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : ACCACATCAATGACCACATCACGCAGATATTAGTGT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 742-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFS01000002.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2180 NODE_2_length_396224_cov_6.37166, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 741 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 680 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 619 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 558 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 497 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 436 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 375 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 314 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 253 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 192 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 131 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 70 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GGCTGAGATAATTGCCGATCATCTTGAAGACATGTGTTCCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19280-17422 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFS01000002.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2180 NODE_2_length_396224_cov_6.37166, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19279 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 19218 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 19157 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 19096 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 19035 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 18974 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 18913 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 18852 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 18791 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 18730 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 18669 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 18608 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 18547 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 18486 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 18425 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 18364 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 18303 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 18242 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 18181 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 18120 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 18059 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 17998 29 100.0 32 ............................. CCAGCTTACACTATTTACGACGTTATTGAGCA 17937 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 17876 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 17815 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 17754 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 17693 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 17632 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 17571 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 17510 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 17449 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50-568 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFS01000014.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2180 NODE_14_length_108495_cov_7.20351, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 50 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 112 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 173 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 234 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 295 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 356 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 417 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 478 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 539 29 100.0 0 ............................. | A [566] ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GACGCTCTTCCGATCTGCCGTGCGTCAGATCACCCCAAACGCTTTCTTTG # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //