Array 1 1636583-1635804 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006714.1 Bifidobacterium breve NCFB 2258 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1636582 33 100.0 34 ................................. AAAAAAGAAAACCTCTATTGGGGTTCGACCGTGC 1636515 33 100.0 34 ................................. AAAAAAGAAAACCTCTATTGGGGTTCGACCGTGC 1636448 33 100.0 33 ................................. ATGATCGTCCACACCCAGGTGCCGATGCGCCCG 1636382 33 100.0 33 ................................. TCACGGGCGATGAACTGCTTGTCGGTGCCGTCC 1636316 33 100.0 35 ................................. TTGGACAACGGGTACCGGTTGCCGTCCATACGGCG 1636248 33 100.0 36 ................................. ACCTCAGTAGACGTAGCCGTTGCGGCGGGCGCGCGC 1636179 33 100.0 36 ................................. CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC 1636110 33 100.0 36 ................................. GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC 1636041 33 100.0 35 ................................. TGGCTCGCCCACAACTGGTACTAAGGAGAGGGACA 1635973 33 97.0 35 ............T.................... CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG 1635905 33 100.0 36 ................................. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 1635836 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 12 33 98.5 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAGCAAGGCAGGAGCGTGAGGTTCCGGCAGACCGCGGAGCTCGTGCTCCAGCCCGGCAAGGCCAAACGCGACGGCGCCCTCGACAGCCTGCTCGGGGACCTCGCCCGTGCCGACCTGATCATCCTCGACGAGTTCGGCTACGTGCCCTTCGACATCGACGGGGCCCGTCTCCTCTACCAGATCATCGCCGGCAGCTACGAACGTCGCAGCATCATCTTCACCACGAACATCGAGTTCAGCAAATGGGGGACGATCTTCGCCGACGACAAACTCGCCGCCGCGATCATCGACCGCATCGTCCACCACGGACGCCTCATCGAATTCACCGGCCCCAGCCGACGCGTCAGCCAAGCCCTCATGTTCGGCAAGACGGACAACCAGTAAAACAAACCACCGGCCGGCACTCCTCATGCCGAAAACCGAAAAAATTAGTGACGAAACACGAAACACCGACTTGACTAAAAACAAGCATCGCCGCGACCGCCGCCGAAGTGGCGCAA # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGTAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1643190-1641128 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006714.1 Bifidobacterium breve NCFB 2258 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1643189 33 100.0 34 ................................. CGCTCGAATGCGGTTGAGTATCGTATTGGAGACA 1643122 33 100.0 35 ................................. GGTTCGGAGCGTGGCATAAGCCACGCGCGTGTGAG 1643054 33 100.0 35 ................................. TGTTCGCCCGAAGTCAAGTCGGCGCTTGACGTGCA 1642986 33 100.0 36 ................................. ACGTGAAACACAGGAACAATGGTTTGGAAAATTGGA 1642917 33 100.0 35 ................................. GCATCATCCTGGAATGATGGGCGCCGGCGATAATC 1642849 33 100.0 35 ................................. AGGATCGACCAGTGGGGAGATAACGCTTCGACTCA 1642781 33 100.0 30 ................................. CGGTTACCGCAACCGCCCTGTATACGAATC 1642718 33 100.0 35 ................................. AGCGCCAAAGTGGCCACGTCCAAATTCGGCACAGC 1642650 33 100.0 35 ................................. AGCGCCAAAGTGGCCACGTCCAAATTCGGCACAGC 1642582 33 100.0 35 ................................. AGCGCCAAAGTGGCCACGTCCAAATTCGGCACAGC 1642514 33 100.0 35 ................................. GATGTATGGGGTATTGCAATCTGCCCGCGCTCAAA 1642446 33 100.0 36 ................................. ACGTGAAACAAACCGCAACCGGAGAGCGTCGGCAAA 1642377 33 100.0 34 ................................. GCAACTACTCGGTTATCTGCATCCCACGGCATTA 1642310 33 100.0 35 ................................. ATTGACTTGGATTCCATGACCGACATGGAGGTCGC 1642242 33 100.0 35 ................................. CTGACTGCCGATCTCGAACAGGTCTGTGACGGTCG 1642174 33 100.0 35 ................................. TACGATCCGCATGACACGGCGCATCTCCTGGTCAC 1642106 33 100.0 34 ................................. CGAGAGCGCACGTAAATCGCTCGGTTCGCCGTAA 1642039 33 100.0 35 ................................. CGCCTGATTACGTGACATTGCAATCCAATATGCTG 1641971 33 100.0 35 ................................. CTTTGTATGCAATCGTATCAACGCCCGTCGCGACC 1641903 33 100.0 35 ................................. GCGTAGTCTAGGCCCCACGCGCCGGTCGAGGCGGT 1641835 33 100.0 35 ................................. AAGGGCCTCGGCTACGGCACGTACACGGTCACCGA 1641767 33 100.0 34 ................................. AACAACAAGGCCACGCATGAGGAACACAGCGCCG 1641700 33 100.0 33 ................................. TCCTGCGCATCCTTGGCCTCACGTTTCGCGGCT 1641634 33 100.0 35 ................................. ATCAGGCGTGAACCCCGCCAAACACGTTCGAATAA 1641566 33 100.0 35 ................................. ACCATAGCCCACGAACTCGGACACCTGCTGCTGCA 1641498 33 100.0 34 ................................. CCCGACCTGCGGTTCGGCACGGTCTCCCAGCCGC 1641431 33 100.0 36 ................................. ACGGTGACGGTCACATCGTTCCACCCACCAAATACG 1641362 33 100.0 34 ................................. AGGGACTTGACGTAGAAGTCGCCGAGGGTCTGCG 1641295 33 100.0 35 ................................. CTCGCCCGGCGGAATCCCGTATCGAAGTAAAGCGA 1641227 33 100.0 34 ................................. GAGCTTTCTGATGGCGCTCGGATCCCAAGTCACG 1641160 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 31 33 100.0 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : AAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAATGCGCTGGTGTTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGGTGTCCATTTTCGCG # Right flank : CATTGTGAGTGTAATCGGCAGTGTTGGTTTTTGTTTTTGTTCAATAGGATTTTGAGGTTTTAGTCACGAAGGTTTTTCGGGTTTAGGCGGAAAGGCATGCCGACCACCCGTGGGCCTTAGCCTGATGGTGCTTCTAGTTCCATTCGGGAAAGGTCCGGAAAGGCAATGATCAGCATGCCCCAGATACAGTCTATCCGTTCGCGTCGCAGGAACGGTGAGTCCATCGCCTCGATAGCGCGCAGCGAGAGGGTCAGCGAGCCGACCGTGCGCAAGTATCTGAGGGTCGACGGCCTATCGGCCAGGCCGCCCGTGAGGCGACGTCGTGGTTCGGTGATCGACGAGTGGCTGCCCATGATCGAGGGCATGCTCGCCGAGGACCGGGAGACCTGGCGCAAGCAGCGGCATACCGCGACCCGCATCCATGAGCGGTTGCGCGACGGGTACGGGGCCGGGGTGTCGTTGTCGACGGTGACCCGGACCGTGGCGCGGCTCAGGCGCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //