Array 1 26018-25684 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012022.2 Corynebacterium pseudotuberculosis strain 262 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26017 29 100.0 32 ............................. GATATGCGCACGGTATAGGCTGTTTTCCTTCA 25956 29 100.0 32 ............................. GGAATTTTGTTTGATGTCCAGGCCGTGTGTGT 25895 29 100.0 32 ............................. CGGCTCGGTCGGTTTCATCATTTCTCATTCTC 25834 29 100.0 32 ............................. GGTATTGCCGTCTTTATCTTTGCGCCAGGCGG 25773 29 100.0 32 ............................. GTGTTTTCGCCAGACGGTTTTAGAGCAAGTTG 25712 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : ACATTATGATGGAGATTCTCGCTCCGCATCTCCCCGAGCGTACCGACGACCGACTCATCGGTGGAAGGAACCGCGAAGTCCCTGGACACAGGCAGTATGGGGGTACATAAATGTTTGCGGTCATTCAAGGACACAACCTTCCAGAACACCTCAACGGCTACCTCAGTCGCTTCCTTTCTGAAGTAGACGCAGGTCTTTATGTAGGAGTTCTATCCAGGGCTGTCATGGAAAACCTTTGGGAAAAATGCCAATCTGTAGACTTAGCGGGATCTCTTACTCTGATCCACCCGCAATATGATGCCGAACAAGGGTTCAGAATCCGCACAACAGGAAAACAACGCCGTCCTGTCGTTGATCTTGATGGCCTTTTCCTCTCTGCTCGTGGTCTAATAGAAGATGTGCGTTTTGCTGACCCCCTGGATGAAGCCGATGCAATTATTCCAGACGAAGTTTTGGAGGATTTTTGCCCAGAGAGTGAGTAAACGCGCAGGTTATTTAGT # Right flank : AGGTGCGGGTGAATTTGTACGCCCCCCCTGGGCTTTTCTCTGAACTGGCCCCCGAAAGTTGGACTGGTTTAATTCTAGGCGGTGAGGGGTTCAAGGGTCTGATTCCGATATTGCATCGGGGTCAGGCCCTTTAGTCGTTGTTGGATGCGTTTGGTGTTGTACCACTGGATGTACTCGTCGATCGCTTGGTTGAACTCTTCGACGGTGTCGAAGACGTCCCCGTGGTACATCTCGGTCTTCACGTGCCCGAAGAAGTTCTCCATGACCGCGTTGTCGTAGCAGTTGGCTTTCCTTGACATCGACTGAACACCACCGTTGTCACCGATCAGGTTACGCCAGGAGGAATGCTGGTACTGGAATCCTTGATCGGTGTGCATCATCCACCCGGGTTCAGGCGCACATGCCGCGATTGCCTTAGATAAAGAATCGGCGGTAAAGGCTGTCGACGGTGATGTGGCCACGGTGTGAGCGACGATTGAGCGGTCGAACAAGTCCATCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 1837536-1837747 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012022.2 Corynebacterium pseudotuberculosis strain 262 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1837536 29 100.0 32 ............................. GACGGATGGCTAAAAGGAAACGCCCTGAAATA 1837597 29 100.0 32 ............................. GCACCCAGACTTCACGTATTCGTGATGGTGCT 1837658 29 100.0 32 ............................. ACTAAAAAGCTTCATCAGGCGGCCCCCTCTAG 1837719 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 CTTTTCTCCGCGCACGCGGAGGTAGTTCC # Left flank : CCTCGACCCCTGCGAAAACCGCTAACCCTAGAAAACCTCGAAACTGAGACTGCTCAACATCAAGAATTTGCACACCATTAGCAGCCAAAACACGAAAAGCTGCTGCCGACACCCCTTGCCGATCCTGGCCGGAGATCGTAATAACAGCCGGGGTTAACTCTGGGCGAAGACTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTTGCACGAAAGCCCTTCAATTCCTCCCGGCGCTCCCCCCTGTTTAGCGATGCTGTTTACTTTCCTAACAACGAATACATATCTTGAGCATCTATTAAGTTTCATGTCCTCAAGTCTGGTGCTTGCCCTGCTCATTGTGGGGGTAAGTAATAGGTCCTCCCAGTACAATCATGGTCTAATAAAAAGTGCACTTTCGCACCGACGACGAGGGGTTAATGCGATGATTCCAAACGCAGTTTGGGCTGTTTTAGCCCTTTCCGAGGAGTAAAAGTGCAGGTGAGTTAGT # Right flank : CCACCGAGCGGTTTTAGCTCGACACTGATTTTCTTTGTTGTGACTTCTCTATCGGTGTACTCCGCTCCGATTTCGCGGAATACTGCATCACGCTACGTAGCTAGGCGGCGATAGCCGTACGACAATGTGGCTCCACCTCCTGCTGGATTCACTGCCGTATCGAATGCCAAGCTATCCAGAACCACCGATTCCTTGCGGAACTCATCGATGACTGTTGGCTCATAATCTTCTAGGGTATTGAGCTTTGCTTGCTCTAGGTTTATAGCCATTTATTCCTCCTTTAGGCGTTAAAGTGGGCACGCAAAGCGATTGAGAGTGAGTTTGTTTGCGACTTGCCAGCTGCGTTCTGACCTTGTGAAGGGTCTAATGCAGAGCGGTCGAAGCCGATTTGTCTTTGCAAGTGCTTTTGCGTCTTCCATGATTTCTTCTGCGGTTTCTCCCCGCAGTCTTTCCGCCATCTCGGCGGGTAGTTTGGTTGCAGCCAATGTCCCTGCCACGGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGCACGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //