Array 1 2418-1130 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWNL010000049.1 Acinetobacter bereziniae strain ACIN00257 ACIN00257_c0049, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2417 28 96.4 32 ...........C................ ATGATTCGGGAAAACACTTCGTCTATCGTTTA 2357 28 96.4 32 ...........C................ AAGCATTTTCTGTAGCCGGGTTAAGAAACTCA 2297 28 96.4 32 ...........C................ TTGAGGAAATGCTTTGAGCAATCGTGCAAGGT 2237 28 96.4 32 ...T........................ AATGACAATTCAAACTGAAGAAATCCTTGAAA 2177 28 100.0 32 ............................ TTATCAAAATTTCTTGAAACAGCTCTAAATCC 2117 28 100.0 32 ............................ TTTTAATGTTCTTGGTAATGAAACAGTTTTAG 2057 28 100.0 32 ............................ AAGATATAAATTACCCAACTTGATCGATCTCA 1997 28 100.0 32 ............................ AAGCGAATGCAGCACAATTAGAGAACCGCGCA 1937 28 100.0 32 ............................ ATACATTAAAATCGCGAAGTCTTGCGTACTCG 1877 28 100.0 32 ............................ TCTAACATGATAGCCGTGTCTGCGCTACGCAT 1817 28 100.0 32 ............................ TCAGCAGGCGGCGGATCGCTGCCGTCGTAGCC 1757 28 100.0 32 ............................ AAGAAGGTGCTGTTGCAGGTAAGTGGTTGGGC 1697 28 100.0 32 ............................ TCCAACCGCAACAAAATATTGAATGCTTTGTT 1637 28 100.0 32 ............................ TGACTGACGTTACATTGGAAGGCAGTGCATTA 1577 28 100.0 32 ............................ AATTGAAATCAGGGTTTCTGTGAGGAATTTAT 1517 28 100.0 32 ............................ ATCATGGCGAAAAGGCGTGCCAGTCATACCAA 1457 28 100.0 32 ............................ AATGCGAGCTTTTAAATTACCAGTTGATAATC 1397 28 100.0 32 ............................ TGAATATGTTTATCTTAACTACCAAGTGATTG 1337 28 100.0 32 ............................ ATGTTGAATTATCAGTAGACACCTTTAATGAA 1277 28 100.0 32 ............................ CCTTACCAAAGCGATATAAGCCATCGCACCGA 1217 28 100.0 32 ............................ ATTGTGGTAAAAATTAACTTAAATTTGATTTT 1157 28 89.3 0 ..........AC.C.............. | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.9 32 GTTCACTACCGTATAGGTAGCTTAGAAA # Left flank : AACAGCTTTAAATGATGCCAAATTTAGTAAACGGATCTCAGATAGACAATTTAATTTAATTCAAACAATTATGTTTGTAACAGGACAGACAAAAAAGTTTTTAAACCAAGCTGAGTTATATCGAATACCACAAATCCAAGTTTTGTATACAGGTAAAACAGAACGTACTTTTTATCGTGATATTGCTAGATTGGTTGAGCTAAACTTTTTAGATGATCAGGATGGATTGATTGTTGTTGGCGAGTCAGTTTAAATATGATGAGTTTATAAATTGCTTGGCAATATTTTATAAATTTTTTGCAAATGAAGCAAAAGTAGGAAAATTTGGATTGTATAGATTTTAGTGAAATAGAAGATAATTCTAAAATTTTACCCCAATATTTTTTAGCTCTTTAACAACTGAATAAAATCAATAAGTTATAATTGTAAGTAGAAACTTGGGTCATTTGATGATTTTAAGGTTTAACTTACTGTTATTATTTTTATGTTTTAAAGTTATA # Right flank : ATGTCAACACATGTATTACTGAAAGTCTAAGAGTTCACTACCGTATAAGTCATTTGTACGTGCTAAATAGAATGTTTATTTTTACTTGATTATTTAGATAATATTTATAAAAGTCGTTAATCGATTTTTATTCCGAAACCCCTTAGAAAACTGTTTTGTTTAACAGGATAATCAGCTTTTTTTATTTATCTCAATTTCAATAAATGGGCTAGGCAAGATCTTTTATATTCAAAGTTGATAATAGATGAGTAATTTTCTTATTGAACTTGAAAAAACTAAATGAATAAATCTCATCTTTTTATTGAATAGGCGTGTTTATAGGACTGAAAAATTACTTGATTATTAACTTAAAAATAAAATGGTTACGTAACTTTTTTATAATTTCGCAGCAATTAATAAACGCAGTACCTAAATAGCAAATTTTTGCTTCAATTGGCTGATTCATTTTGCTTGCTTATACAATTTTTGGATTTTTAAAAAATTGAATTGAGACGAAATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5946-4055 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWNL010000049.1 Acinetobacter bereziniae strain ACIN00257 ACIN00257_c0049, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5945 28 100.0 32 ............................ AAACAAGGATTACTATGAACCAATTTAATAAA 5885 28 100.0 32 ............................ TTGTTGAGGAAATCTGACCAGTCATAAAGTGA 5825 28 100.0 32 ............................ GATGGTAATGTAACTTGAATCTCGCATTGACG 5765 28 100.0 32 ............................ TTTACGATTACTTACGACTAATTTTTTCATAG 5705 28 100.0 32 ............................ AGAGCAAATAGATTTAGGTATTGGTGATGCAA 5645 28 100.0 32 ............................ ACAACGTTCACAAACTAAATATTGATTATCAA 5585 28 100.0 32 ............................ TTGCTCTAATTCACGTTCAGAATAGTTTTGAA 5525 28 100.0 32 ............................ AATACAACTCCAGTTGTCATCGCAATACGTTT 5465 28 100.0 32 ............................ ATGAATCAAAAACAGCGGGAGAATGAGAATTA 5405 28 100.0 32 ............................ TGTAGGGTCAGTTTCAGGAATTGGAGGAGCAT 5345 28 100.0 32 ............................ ACTATGTTATTTTCTAATTACTCTACTGATAG 5285 28 100.0 32 ............................ TTTTTTATCGCTCTAGGCATGTATACAGCATC 5225 28 100.0 32 ............................ ATTCGCACATTGTGACTGCCCAAGAACAGAAC 5165 28 100.0 32 ............................ TTCGGAACGTTGTTTCTGATCTGTTGATAAAC 5105 28 100.0 33 ............................ AGTTTGTCCATCCCGGAACATTAATGGGTTTTG 5044 28 100.0 32 ............................ GCTTCAAGTGTTACAGCAGTACCGTTTCTAAT 4984 28 100.0 32 ............................ AGCAAGTACAGTAAGTAGCGCCTTGAAAGAGG 4924 28 100.0 32 ............................ TGTACTTCGTTGTACTCCAATCGAAAATAATA 4864 28 100.0 32 ............................ ATTGATGCGAAGGCGTGACAAAGATTAACTTT 4804 28 100.0 32 ............................ TTTTTTATCAAAATCGATCAGTTGAGTGATAT 4744 28 100.0 32 ............................ TGAACAATACACTCACCCCAACCGTGTGAGAT 4684 28 100.0 32 ............................ AACAGGAATTGGCTTTTTCCCTGTTGTCCAGT 4624 28 100.0 32 ............................ TGACCTGATTAATTTTACCAAAGGGCTTTTAC 4564 28 100.0 32 ............................ AACAGGCGAATCTAAACCGAAGCCGAACGTTG 4504 28 100.0 32 ............................ GATGGCGGTTTAGTCGCTGCACCTCAAGTCAA 4444 28 100.0 32 ............................ GCCGAGAACTGGCAAATCACAATACATGATTT 4384 28 100.0 32 ............................ TAAACGTGGTCAAAAGAAATGGCGTTCGGGAG 4324 28 100.0 32 ............................ TTATTCAAATCAATATGCTGATAATCGTTATC 4264 28 100.0 32 ............................ TTTCCCATTTAAGATTAAGGAAATCGTAAACG 4204 28 100.0 32 ............................ ATCGAGAACGTTATAAACCTCAGCATATGTGC 4144 28 100.0 32 ............................ TGGTAATGCAACAGCACAAGATGATTGGAGAA 4084 28 89.3 0 .........T.........A.......C | CA [4058] ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.7 32 GTTCACTACCGTATAGGTAGCTTAGAAA # Left flank : TTGGATATACCTACCAAGATTTTTAAAGGGTTTACAAGTATTTTCAAAGACTTGTAAGCCTTTTTTTTATGGTTAGAATTTTGTTGTTTTGACTAGATTTATCAAAAAATCATAGAAATAATTACTAGACTTCACCAAGAATGCACCAAGATGAGGATGAATGAAGTTACCAAAACCGATTAAACGTGGTGAAGTTTGTTTTACTAAGAAAATAATGAAATGTAAGATTTCTTCATTTTCTAATGATAAATTAAATGAGTGGCATTAAAAACATGTGTGAATTTTGGAAAATCTTTTAGTGATAAGATAAAAGTAGCTGATTTAGAGTATATAGGCTTAATTAATCAAACAAATATTCTAAAATTTTACCCCAATATTTTTTAACTCTTTAACAACTGAATAAAATCAATAAGTTATAATTGTAAGTAAAAACTTGGGTCATTTGATGATTTTTAGGTTTAACTTACTGTTATTATTTTATTTTTTGTTTTAAAATTATA # Right flank : TTAAAATTAATTGGATATAGGTTTAATGTGACTGGAAAAGTCTAATCAATTGAAAAATTTCAATATTATGTTTAAAACAAAATTTGACAAAATGAGTGACATAATCTTTGACATTATTGCAATTAAAATTTGACTAAATTTATGATTTATAATAATAATGTTTTGACATTTTATTTGACAAAAAATTGACAAAATGCCTGATCAAAGTAAAGTTTGGCTAGATGACACAACTTTAAGAGTCATGACGTACAAGTCCGGCTCTTTTACCTTTCAGCTTGGGTTTGACTTAGAGCAGGTTACACCTATGCTTGATCGTGTAAACGATGCACAGAATAGATTTAATAAAATGCCAAGTTTGCCTCAAATTATAGATCAAGTACAAGAAAAGGTTTTAGCGAGTAGTATTTATAGTACAAATACCATTGAAGGTGGTCAATTTACAGAGCAAGAGACGAAGGAAATTTTAAGACTAGATCCTAAGACAATACAAAAGACCGAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-86.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8547-11511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWNL010000035.1 Acinetobacter bereziniae strain ACIN00257 ACIN00257_c0035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================== ================== 8547 28 100.0 32 ............................ TTGTTTGGATATCCATGCATAAGATGTTTTTT 8607 28 100.0 32 ............................ GTCACCAGTTGTCTTATAGAAAATACCCATGC 8667 28 100.0 32 ............................ GTAGTATTTGCCTTTAGTTCCACCTGAACCAC 8727 28 100.0 32 ............................ TGTTGAGGGTGGTTCATTCGCCTCATACAACA 8787 28 100.0 32 ............................ TTTAGATGTTCTTTTATCACCATCCACTTATT 8847 28 100.0 32 ............................ TGACACAACAGCTATGATTTTTTGGCTCAAGA 8907 28 100.0 32 ............................ AGCTTAAATTGCCATTTGGTGTGTCGAATGCC 8967 28 100.0 32 ............................ ATAACGCCAAATTAGCAAGCCAACAAGCACTA 9027 28 100.0 32 ............................ ATAAGTTGTTTTAACTTCTGTCATGCCTTTTT 9087 28 100.0 32 ............................ ATTACAGGAGAATCTTCTCGAAGTTGGTTTTT 9147 28 100.0 32 ............................ GTCTTTCTCTGAACGGTAAACTGACGGTAAAA 9207 28 100.0 32 ............................ TACTGGAAAACCCTGATTAGAATAATTTGCTA 9267 28 100.0 32 ............................ ATTAACTGTTTTTGCTTGTAAATGCGGTTCTA 9327 28 100.0 32 ............................ ACTATAAGCTTCTCAACCGCTTGCCCTGCAAA 9387 28 100.0 32 ............................ TGTCGAGCATCAGCATTACCAAACCAGGTACG 9447 28 100.0 32 ............................ AATATCAATTACAACTGTGCCATCGGGTAATA 9507 28 100.0 32 ............................ TCAAGGAAATGCAGGGGATAGTTTAGAAAAAC 9567 28 100.0 32 ............................ ATATCTCCATTGATTGTTTCTTTAGTGGTCTT 9627 28 100.0 32 ............................ ATGCACTCCCATTTGCAAGATGCTGACTTGCC 9687 28 100.0 32 ............................ TTTGAAAAAACCACTCCAGTATATCTGCCTAC 9747 28 100.0 32 ............................ ATAAATTGCGTAAAAAGTAAGGATTTGATCGT 9807 28 100.0 32 ............................ ATCGCTAGGCGGAGATACGTTGTCAGGGTATG 9867 28 100.0 32 ............................ GTTAATTGCATAACTTGGCAAAGGTAGATTTA 9927 28 100.0 32 ............................ TCGTGGCGCTTCCTTAAAAGGTGGTGCTAAAC 9987 28 100.0 32 ............................ TGGCGTAATCCTGATTCAATCAACTGCGAATA 10047 28 100.0 32 ............................ TTGAAGAATCTTTGCAGGACTACATTTCAATT 10107 28 100.0 32 ............................ ATAAGGGCGTGTAATGTGATAATGACAACCTA 10167 28 100.0 32 ............................ TTACATTTTCAGAGTCTTTATCTGTTGTTTTG 10227 28 100.0 32 ............................ TCATGGGCGGCTGACGGGGATAAAGTAGCCTT 10287 28 100.0 32 ............................ ACCTCGATAAGTTGTACCGATTGGCATGGTTG 10347 28 89.3 32 .......A..G......T.......... AAGACGATTAGATAGCTCACTAATCAAGCTTC 10407 28 89.3 32 .......A..G......T.......... ACCACGAGCTAAAGTAAGAGTTCTCAAATTAC 10467 28 89.3 32 .......A..G......T.......... ATTACGGTGTTGATATTGTCGAATATACCGTC 10527 28 89.3 32 .......A..G......T.......... AGTTTGCAACCATCTCAGCATTTCTGCGATTC 10587 28 89.3 32 .......A..G......T.......... TTCTCAAATTCAATCCATTTGTTATTTAGGGC 10647 28 89.3 32 .......A..G......T.......... ATATCGGGAACGTACCTGAATTTGAGCTTGAA 10707 28 89.3 32 .......A..G......T.......... AACTCCCCAAACTTCGCTAACATCAATATTTT 10767 28 89.3 32 .......A..G......T.......... CTGAGTTATACCGTCACGGAGATGGCGCAGTC 10827 28 89.3 88 .......A..G......T.......... TTTTCTCTGTGCTTCCAATCATGTGGCAACATGTTCACTACCGCATAGCTTAGAAAACAAGATGGGCATATTTATGTGATTCGTAGTG 10943 28 89.3 32 .......A..G......T.......... ACAGAAAAATCCTTTAATAGCTTTATCAATTA 11003 28 89.3 32 .......A..G......T.......... AGTGAGTTCGCCTGCTGTTACTGAATGGGAAA 11063 28 89.3 32 .......A..G......T.......... AATTGAGTTGATTTATCTACAACCTTACTAAC 11123 28 89.3 33 .......A..G......T.......... CCAAACCAAAAATTATGAAAAATACTTTTAAAA 11184 28 89.3 32 .......A..G......T.......... AGTAAAACTATTGGTAATTGAACTGGACAGCG 11244 28 89.3 32 .......A..G......T.......... TAACTTGAAATCAGAATTGCTTGCAAAGTAGT 11304 28 89.3 32 .......A..G......T.......... ACATTCTGAGCCATCGTAGCCACATTAACGAT 11364 28 89.3 32 .......A..G......T.......... TGCAGAAGACTATATAGACAAAACTGTCGATA 11424 28 89.3 32 .......A..G......T.......... TTGCTAACGTTTTGAATTGCCGAAAAGTCTGA 11484 28 67.9 0 .......A..GT...AATCC....A... | ========== ====== ====== ====== ============================ ======================================================================================== ================== 49 28 95.4 33 GTTCACTGCCACATAGGCAGCTTAGAAA # Left flank : TTGAATATAAGAAAATGGTTAGATCGGTTTCCTGATTATGTGCATATCACAGGTGTACGTCCTGTTCCTGAAAAAGTAACGGCTTACGCAGTTTATAAACGTAAGCAAGTTAAAACCAACGCTGAACGTTTGGCTCGCCATCGAGTCAAAAGAGGAGATATTGGCTTTGATGAAGCATTGAGCCGTTATCTTCAAGTGGTGACAACAACTGATTTACCTTATGTCCAAATGCTAAGTTTAAGTACATCGGATGAACAAGATAAAAAGCGTTTTAAGCTATTTATAGAAAAGCAGATCACTGAAAAATCTGAAACTCAGGTTTTTAGTACATATGGGTTAAGTTCTGTGTCTACAGTACCCGAGTTTTAACCCAATATTTTTTCACTCTTTAACAGTCTAATTAAATCAATAAGTTATGGTGGTGGGTTGAAACTTTGGTCTTTTGTAGATTTTTAGTCTTAACTCACTGTTATAACTTTATTTTTTGTTTTAAAATTACT # Right flank : ATATAAACGCCTTAACATCTTCGCTAAATTTAGGAAAGTACAAACGATATGGAATAATTTTTATAGTAAATAAAAGATGATAATTTAAATGATAATTATTTGCATTATTAATTGCATTTGAATATTTGGTAAAATACAATGTGCAACAATTCTTACACAATCCCTCCGTAATTTGAGTTGCGTATTAACATGAATAAACAATTAACACTTCAAGCACTATCTCTCTCCATACTCTCAGCAATGTCAATTTCAACATATGCAAACGAGACTTCAGAAGACTCTTCCAAGCTTAAAACGATCGTCGTTACAGCAAGTAGTCAGGCGGTCGATGTTAAAGAAGCACCAGCCAGTATTAGTGTGATTACCAGTGAAGATATAGAAAAACAACCGGTGGGTAGTCTTGGCGAGTTATTAAGTAAAGTACCTGGGGTTACTGGTGGAATTAGTCCTAGCAAAGAAGGCTCTAAAATTAAACTACGCGGTTTACCTGACAATTACAC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTACCGCATAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCACATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 87125-89072 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWNL010000008.1 Acinetobacter bereziniae strain ACIN00257 ACIN00257_c0008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 87125 28 100.0 32 ............................ ATATGTGTTGGAAGAAGGTGTAACCCAAGACG 87185 28 100.0 32 ............................ CAGTGGACACCTTTAGAATGCAATCAACGTTT 87245 28 100.0 32 ............................ CAACGATCGGCGTCAGCAAGTGGCATTTCTGT 87305 28 100.0 32 ............................ AAACACAGTATTAATTAATACAGCGCCACCAA 87365 28 100.0 32 ............................ TTTCAGACGATGTTCTCTTGAACCTGATTTCA 87425 28 100.0 32 ............................ TTGCTGTGTATAAGCGTAATACTTGCCGTTAA 87485 28 100.0 32 ............................ TAAAGATCGTATCTCAACATATAAGATTAAGT 87545 28 100.0 32 ............................ TAACTCATTCATGGTTGCTAATGCATTCGTAG 87605 28 100.0 32 ............................ TTTGCCACCGGATTGCGATTGGCGAACAACTC 87665 28 100.0 32 ............................ TGCGACCAATGCTGGCTGTAAATCAGTCGTAA 87725 28 100.0 32 ............................ TGCGGGATTGTTCGGGTTGTACACAGTAGGTA 87785 28 100.0 32 ............................ AAAAGCCTACGGCAAATTTGAAGAAGTAAAAA 87845 28 100.0 32 ............................ AAAAAAACAGGTGTTAATTTCAAAGGTAAACT 87905 28 100.0 32 ............................ AATACACGATCATTCAGAGGCTATCCTCAATG 87965 28 100.0 32 ............................ TCTAAAACCTCATAATATAAAATTATTATCAC 88025 28 100.0 32 ............................ CATGATTTGAAATTGTCCCCAAGAACAAGACA 88085 28 100.0 32 ............................ AATAAGATTGGTAAGTATCCTTCAGGTGCGAC 88145 28 100.0 32 ............................ GCCATTATTAGGGTCATTTGGATTAGGTTTAG 88205 28 100.0 32 ............................ AGTAACCAAAATAGGATTAAATTTATGATTAT 88265 28 100.0 32 ............................ TGTCGGGTCTGTTTCAGGCGTTGGGAGTGCAT 88325 28 100.0 32 ............................ AAACAAAAGCGTTTTATATGTCAGAGCTTCAA 88385 28 100.0 32 ............................ GATCTATTTTTAAATAAGTAGTCTGAAGATTT 88445 28 100.0 32 ............................ TACGAAAGTACGTAACTTGTTCGCAATGTATT 88505 28 100.0 32 ............................ TCGGTGTACTTGCGTTAGTACGTGCTGCTTTT 88565 28 100.0 32 ............................ TAAGACCAGATGACTATTTTAAAAAAACAACT 88625 28 100.0 32 ............................ ATTCACCGCCATAAAGGATATGACTTTTTATT 88685 28 100.0 32 ............................ ACGTACAGGAAAATCACTAAAATCAGTTGAAT 88745 28 100.0 32 ............................ ATTTTGTTAGAAATGCTCTTAATGATTAGGAC 88805 28 100.0 32 ............................ TTTCCAATCCCTCTGAATACAAATTTCCAAAA 88865 28 100.0 32 ............................ ATTAAGCCATTTTTGACAGTCGGATTGCTTGA 88925 28 100.0 32 ............................ ATCTAACGAATTGTAATAACCATCAAATATAA 88985 28 100.0 32 ............................ TCATTGATGTTAAAGAGGGTTACAGTCCAACA 89045 28 89.3 0 ..C......A...........C...... | ========== ====== ====== ====== ============================ ================================ ================== 33 28 99.7 32 GTTCACTACCGCATAGGTAGCTTAGAAA # Left flank : TTCCAGAAACAGACTTGGAATCATACATAATTCAAAATTTTATTCTTATAAAAACAATAAGCACTATTTTTGATGAAATTTACGTTATAGCACAAGTTTTATTGAACTTTAACATCATATAAAAATAATCTTTTTTAGCAGTTTATTGAGTTGCAAAGGAAGTATGTATTATCGTTTGCAAGATAAATTAAATTTTAAATATTTGATTGATAAATAAATTATTTTATATGAGGTATGTCGTATGATTCTAAGGAGTGAATCTATTAGAGTTTGTATTATATACTGCTATAACTTGTTGCTGATGAGGCAAAAGGGAACAATTTTGGGAAATATGCTTTTAATAGAATTACGATTATTCAAATATTTTAACCCAATATTTTTTTACTCTTTAACAACTGAATAAAATCAATAAGTTATATTGGTAAGTAAAAACTTGGGTCATTTGATGATTTTTAGATTTAACTTACTGTTATCACTTTATTTTTTGATCTAAAATTATA # Right flank : AAATTGTTAAACCTCTCTGATGATTTTAAAAATTTATAGTTGTATAAATTGTTTATTTTATAGCAATAAAAAAAGCCCACTCGAATGAAGTGGGCTTTTAGAATTTGGCTCTCCAACCTGGGCTCGAACCAGGGACCTGCGGATTAACAGTCCGTCGCTCTACCGACTGAGCTATTGGAGAATCTGCATGCGATTATAAGGATATATCACGAGTGGTCAAGCCTTTGATGTCATCTTTTCTTCATTTTTGACTTGTATGCTTTTTATTTAAACAAATAAGATCAAAATTAAAAAAATGGATTTGAGTGGTTGCAAAGCGAGAGCTGACTTGTTAGATTAAAAACATAAAGAGCGTTTAAGTTTGACTTAAACCGTGTGGATTTAACCAACTTGCCAGCACTAAAATGGCTAAATAGGAGACAGCGCGATGACGACGCTAACTATTTCTCAAATTTTTGAAAAATTTTCTTTTTATCAAGAAAACTACCTTTCTATCCTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGCATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTACCGCATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //