Array 1 32693-30779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQY01000159.1 Methanosarcina sp. 1.H.T.1A.1 scaffold7_1_size72968-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 32692 35 94.3 38 C.............C.................... CCGTTTGCGTTTAGTTCGGAGGTATATTTGATATCTCA 32619 35 97.1 36 ............T...................... GTGTATTGCACCTTCGGCATTACATTTGCCGCTGGT 32548 35 85.7 39 ...........AA.T.A.......T.......... AGCGGCATGTTATATGCAGGGACACCATCATCCGAAAGT 32474 35 94.3 36 ...........AT...................... TAGGTCAGCCGGTGCTGGTTCTGGCTTGCCGGTGTA 32403 35 100.0 40 ................................... GGGGATTTCTACTTTAGTCATTGTTAACCTCAGTATGTTG 32328 35 100.0 36 ................................... GCCCTCTACACATTCTAAAACAATGTCAGAAACAAA 32257 35 100.0 38 ................................... AAACCCTGGCTGAAAGACCTGAGAGCTGACACAAAAGA 32184 35 100.0 37 ................................... AACTGGATTGCATACGAAAAAAGCCTTGACATTACAA 32112 35 100.0 37 ................................... AGGGACCCAGGTCGCAGCCAGCCCGGCAACCGGAATA 32040 35 100.0 37 ................................... TGGGATTATGCCCTTTTTTGCGACCTGCACTTTATCA 31968 35 100.0 37 ................................... GCGTTTTCCGAACGAGAAAAACTCACTGCTGTTAACA 31896 35 100.0 39 ................................... CCCTCCTTCTCCGAATCGGACTTTCAAAACATCATCAAA 31822 35 100.0 35 ................................... ATGTAAGGCCCGGCAATTGAGGAAGTATCAGAAGA 31752 35 100.0 39 ................................... GACCTGAGCAAAATGGACAGTATCACTAACATTAGAATA 31678 35 100.0 36 ................................... CAGTTCGGGAAAGCTGAACATGCTTCAGGTGCGATA 31607 35 100.0 38 ................................... TTAGATGTTCTTTCCAATACTTTTTATCAAGAGTGTGA 31534 35 100.0 38 ................................... ATCTCCTCGCTTTTCGGGTATGGCTGCAAAATATAAAA 31461 35 97.1 37 ..................................T GGGCCGATGTCTTTTCAAGCTCTACAGATACTCAACT 31389 35 80.0 39 ..C.......ATT.T.TC................. GAATTTGATGCCGGACAATGGAGAATGCATTTAAGCAAA 31315 35 88.6 37 ............A.C.A.................T TCGTCTAGGTTAGTATACCCAACTAGGGCCCCCGCCG 31243 35 97.1 37 ...........A....................... AACTTATAGAAAGTGACTAATGCAAATCCCTTACAAA 31171 35 100.0 36 ................................... TTCACAGCTCAACGCGCAGCCAACCGGATAGAAGAA 31100 35 100.0 36 ................................... TCAAAATTGCACCCGGGATGGTCTCTATACAGAGTA 31029 35 100.0 38 ................................... TTCTTGCGAATGGGAATTCTGAGAGAGCAGGAAGCCCA 30956 35 97.1 36 ..................................T ATACGTATTGGGGAAATTGGACTTTTAGGATTAGAT 30885 35 97.1 37 ..................................G TTGCCAGCTGCTAGCGGAATTCCGAGGGTTTGATTTG 30813 35 80.0 0 ......T....ATTT.A.......T.......... | ========== ====== ====== ====== =================================== ======================================== ================== 27 35 96.6 37 TTTCCACAATCGCAAGGTTGTGGCAGAATTGAAGC # Left flank : TGATGCTTGAATATGGAATCCTTCCGGACCTGTCTGGAATGCAGATCGACGGTCCAGCCTCTCAGCTTCTTCTTTCAATAGATAAAATGGGATTGCCACAACCGTCTTCAATTGAGCCCATTCCAGCCTACGAAGAGAATGGAGCAATAAAGCAATGGCTTACCTTCAAGCGTTACAGGAGTGGTAAACATGCTCCTCCATCCGGAAATCCTTATGGGTTCCGCATTACTTTCCCAGAAGAAATAAAGGGTCCTGTAGCACTTGGGCATGGATGCCATTATGGGCTTGGCATTTTCATTCCTGATGACCAATTTTGATGATTTATTCATATATTCTTAAATCTGGGATAAGCAGCCCTTTTCCCGGGTCCATCTGAACCAGACAGATGGTAAAGTCAAATGGCGAATGAGATACAAACGACGCTGTGACTTGGGAATACCAGAGCTTATGCTATGGATTGGACTGATATACTCTGCATTATTTCATTAGATTTCGTTATG # Right flank : ATGATAGTTATAAGCTATTACAACGGGAGGGTTATGCGAATGATCCAGGTTTCTAACGTTGGAGTGTTAAATTCACTTATTCGGCTGAAACGTGTTTCTGTAGAAATGAGTTAAATACTAATATACAAACTCTTATACCGTTAAAACCAGAGACTGATATTCATGGTTCAGGAAACAAGGATACTCCACACAGCAGACACGCACCTGGGATACCGGCAGTACCACAGCGAGGTACGGAGGCAGGACTTTTTTAAGGCTTTTGAGGTAGTCATTCAGGACGCGGTTGACATGCAGGTTGATGCTGTCGTGCATGCGGGGGACCTTTTTGATTCGAGGAACCCGACCCTTGAAGACCTCCTTGAGACGATGAACCTCCTGTTCCGGTTGAAGGCTGCGAACATACCTTTTTTTGGAATTGTAGGGAACCACGAGAGCAAGCAAACTACCCAGTGGCTGGACCTCTTTGAGGAAATGGGGCTTGCGGTAAGGCTCGGAAAAAC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCACAATCGCAAGGTTGTGGCAGAATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 849-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQY01000016.1 Methanosarcina sp. 1.H.T.1A.1 scaffold91_1_size10097-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 848 32 100.0 34 ................................ TGAGAAGCTTTTTGGGCAGCCGTCAGGACAGAAA 782 32 100.0 32 ................................ GTATCAGGTGCAGATTGATAGCCCGATGGCTA 718 32 100.0 36 ................................ TTAAGTCAACGCCAGCCACCGGAGAATAAACAAACC 650 32 100.0 37 ................................ CTCACTCAGTCTGGTAATGTTAGCCAGGGCGGAACAA 581 32 100.0 34 ................................ AATGGTCGCTAGAGTAGACGGGGCAACCCGGAAA 515 32 100.0 33 ................................ GTCTTTTGTGGGTTTGTGAAGTACCATGTTATC 450 32 100.0 33 ................................ ACCGGTGCATAGTCAATTTTTGCCGCGTGATAA 385 32 100.0 34 ................................ TTTGAATTCCCATCAATTGTCAATCCTGAAAATT 319 32 100.0 36 ................................ ATAAACGTTGACGAAGGTATTAGTGCAGGCGATATT 251 32 100.0 33 ................................ AGACCAGATTGGCCGGCTCATAATGCCCTCGTA 186 32 100.0 37 ................................ GCTATCCCCTACGAAAACGCTTATCAATACGCCTAAA 117 32 100.0 31 ................................ TATAATTACACAAATAAAGCCTATACAGACC 54 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 100.0 34 GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Left flank : ATATTGATGGTTATCCGCCATTTTTTATGAATTGAGGTGTTTTAAGTGATGGTACTGGTAACATATGATGTGAGTACAGAATCCGAAGGTGGAAAAAGCAGACTGAGAAAAGTGGCAAAAGAGTGCGAAAATTACGGACAACGGGTTCAGAACTCTGTATTTGAGTGCCTTGTAGATCCTGTTCAATTTGCCCAGCTTAAACATTCTTTATGTGATATAATGAATGAGGAGAAAGATAGTCTCAGATTTTACTATCTGGGTAAAAATTGGAAAAATCGGGTGGAGCACTTTGGTGCAAAAAAAGGGTACGATCCAGAAGGTTTATTAGTTGCATGATCTTTGCGAACCCATAGTGAACATCGATTTACTGGGAGGTTCGCAGGAAAAATCAATTCATTATATTTATTTTTTGTGGCAATTTCCTGCTGGATTCAAAAACGTGAACTTTTAAAAGAAGTATATATATCACACGGTTGATACATAATCTAAATTAATTTACG # Right flank : TAGGAGCCTATATGCCCTGTCTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7461-4931 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQY01000079.1 Methanosarcina sp. 1.H.T.1A.1 scaffold92_1_size10035-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7460 29 100.0 32 ............................. GAAAACTTATCTGCTCAAGAGGCTGTGAAAAA 7399 29 100.0 32 ............................. GCCCGGATAAATACGGCAAAAGTACAATCTGC 7338 29 100.0 32 ............................. TCATTGATACACTTTGATACATTTTTGATGCC 7277 29 100.0 32 ............................. AGATCGTAATTCCAACCGATGGAGGGTTATTA 7216 29 100.0 32 ............................. GTTCCCCTGCGCTGTGCTCGCAGTGTGATCCC 7155 29 100.0 32 ............................. AATCTTTTCATACTCCAAAATACTCTCTTGTA 7094 29 100.0 32 ............................. ATGCGATACTACAGCGCACGATGGCATTTATT 7033 29 100.0 32 ............................. TTATTACAGCAAAAGGGGCCGGTAGCTGGCCC 6972 29 100.0 32 ............................. GACGAGCTCAATATCATTAGAAACTGAACAAA 6911 29 100.0 32 ............................. GGTTATAGCGAGGGTAATAAAACTGGTCGCAT 6850 29 100.0 32 ............................. CAGGAATCTCGATGGGGGAGGCTGGCGTTTCA 6789 29 100.0 32 ............................. ACCTCCGGCAGAAGCTCGAATTTGAACCGGCT 6728 29 100.0 32 ............................. GATACCCATGATCCCAGAGGGCGCAGGAGTGA 6667 29 100.0 32 ............................. TTAAACCACAAATAGAGAATTCCGAAAAGCTG 6606 29 100.0 32 ............................. AATCAGGAAAGGAATTAAGGCCCCCCTCCAGC 6545 29 100.0 32 ............................. CTGCTTTTTCATTATTGTTTCCAAATGCACAA 6484 29 100.0 32 ............................. TAATGGTTTATTTTTAATATATCTATCATGAT 6423 29 100.0 32 ............................. AACAGCTTCTCAAATGTTTAATGTTCCACTTG 6362 29 100.0 32 ............................. GTAGCACAGGGAACTTATATTGCAATTCCAAC 6301 29 100.0 32 ............................. GTAATCAGGAGCGTTTCTAAGTTCCATCTTCA 6240 29 96.6 32 ............................C AGTGAAGCTGACAGGCTTAGGACTAATGCACA 6179 29 100.0 32 ............................. AGGGCAGGGTTTTTGATTCCGTGATTGTGTCG 6118 29 100.0 32 ............................. CATAAGGGGCAGCCCTGCAAGAAGTCCGTTTG 6057 29 100.0 32 ............................. CCTCAGGTTGTCAACGTCGATGATTTTCTCGA 5996 29 100.0 32 ............................. GGATCATAGATGAAGACGGGAATGTAATTAAT 5935 29 96.6 32 ............................A GCAGATCCTCAGCCGTGAGCAGATATTACTAT 5874 29 100.0 32 ............................. AAATCACAAATTATTTTAGAACACATAGATGT 5813 29 100.0 32 ............................. TTCAAAACCAGAATATGATGTGTTGTAGGGGG 5752 29 100.0 32 ............................. TCAATTTCAGGAGCCAGAAAATCAATAATTTC 5691 29 100.0 32 ............................. GAATACTTGAACCGGAAAAATAGAACAAAGAT 5630 29 100.0 32 ............................. GAAATTTAAATTTAAATTTGCCCTCTGATACG 5569 29 100.0 32 ............................. GCCGGAGTCTTGTTTAATCCTATTTATGCCAC 5508 29 100.0 32 ............................. TTATTGCGGGATAAGCGTCGCGGTTTCCATCG 5447 29 100.0 32 ............................. AAGGCATAGTCCACGAATATTATAACAACTGG 5386 29 100.0 32 ............................. ACAGGACATTTTTTTAGATCCAATACAGGGTG 5325 29 100.0 32 ............................. GTGAATGTGCCTGAGGTTGTGTTCAGGGTTTC 5264 29 100.0 32 ............................. TCCGAGACACTCTCATAGATGCATTCTGTGAG 5203 29 100.0 32 ............................. CCGCATGAGGTTCCTAACTGGGTTTCGAATGC 5142 29 100.0 32 ............................. GTGCTTTGCGAACTTATCAAAGTCTATCAGGT 5081 29 100.0 32 ............................. GGGACCCCCACCAGAAGAAACAGAACCAGGGA 5020 29 100.0 32 ............................. GGGCATACCCTCTTTTTCCCGGAATTCTATAT 4959 29 93.1 0 ............CA............... | ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GAGTTCCCCACAAGCGTGGGGATGAACCG # Left flank : CTGCTGGAGATATTCCTATTCCTGAAGAACCACCCGAATCACTCCCTCCTGCAATTCCAAATGAAAGGGGGCTTAATGATGCTGGTCATCGTCCTTGAAAACACAACTCCCAGACTGAGGGGGAGATTGACTCTCTGGCTTCTGGAAATCAGGGCTGGAGTATATGTAGGAGATTATTCTGTCAAGGTAAGGGATATGATCTGGGAAAATGTAGAAACCGAGTTCAATGACGGAAACATTGAAGGAAGCGCGATTATGATCTGGTCCGCAAGAAACGAAATTGGATTTGATTTCAAAGTACTCGGCGAAAGCCGCAGAATCCCAAGAGAAATGGATGGAATAAAGTTAATATCCTTCATGCCCGAAATTAAAACCGAAGAGTAGATAAATGGAGACATTATATTTTTAAAATGTTCTCTCTTTTATGCAGGATTTAATATGAAAAAATTTTTATATATTACCGGAAAAAGTTTTCCTATTGGTAATATAAAAGGCAAAGA # Right flank : CTATAGAACCTTGATTGTAAACTATTATTCGCGAGCAAGATCCACTAAAACAGGATATGACAGGCTACAAGAAGGATATCAAGGCATCTTAATTTTGGTGAGGTCTTTTCTCACACGCCAACACTTAAAAATATTTAAATAACCAAACATCCTAAATTCTTAAAACATTACATAGAAAAAGAGCAGCTCACGGGAGGTAAAATACACATGGCTAACCTGTTTTTAGAGTGGCTAATGGAGTTTTTAAGCAACTTCTTTGGATTTTTAATGCCCTTTTTAATTCAATGATATCAAGAACATCATCAGGAATATGTATTTCATATTTCCTGATACTAAATTTTAAGAGAAATTCAGAGTTAAAACATTAATTAATCAAAAGGCCATTATTCGCGAGCAAGATCCACTAAAACAGGGATTGAGACATTCCATACTGCAACCTTAATCTCGCAACAAACGAAGTCGTTATCCATTCCTGACTATTTTTTATAATACAACAATGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACAAGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCACAAGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3552-2917 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQY01000007.1 Methanosarcina sp. 1.H.T.1A.1 scaffold133_1_size3578-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 3551 32 100.0 36 ................................ CCCTATGTCGTCATTTTCAAACTTGCAGAAGTCCCT 3483 32 100.0 35 ................................ AAATTTACCTGCATTTTTGGGTACAAGATCAACCA 3416 32 100.0 36 ................................ CTATTACACGTCCGATTCTGCGAAGGGATACGGGAG 3348 32 100.0 31 ................................ TGTGAAATGTGCGTGAAAGAAACTCCAAAAA 3285 32 96.9 38 ............A................... AGTGACTGTGGAGTTTGAAGAGCTGTCACTTGAAAAAC 3215 32 100.0 35 ................................ AAGAACCTCAGGTCAGGAAGGGTCCTTCTGATCAG 3148 32 100.0 37 ................................ GCATAGCCCGCATCATAATACCATGATTCTTAAGAAG 3079 31 90.6 33 ............A...-.....A......... ATTATAAGTTCCAGAATAAACATTGATAATATA 3015 31 81.2 36 ...A.G...A-.AA.................. GGTATATAGTAAAGAATCAATACGAAAAACAATATA 2948 32 93.8 0 ...........AA................... | ========== ====== ====== ====== ================================ ====================================== ================== 10 32 96.2 35 GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Left flank : GTCATTTTCAAACTTGCAGAAGTCCC # Right flank : TCTCGGCCTCGAACTTTGAGATCTCCAGGAACCAGTAGCCTTCCCTCAAGACCATTTCACTCTCCATGACCTTTATTTTGTTTTTGAACAGCGGGCCGTCGATAACAAAAGTATGGAACTCCCCGTTTTCACCGCAGGGATCGATTGAAGGATTGTGCTTTTTCAGGTCGCATATAAAATTTTCATCGATCTTTCGGCCCAGCCACTCTTTCCCTAACAACCCGGCTTTGACGCTGAGCAGGATCACCTCAAACCCCAAATCTATGAGGCCATTTATGATCTGTTCGGAATTTCTCTGCCAGAGCGGCATTATTAACTCAAGGTCCAGTTCCCCGCAGATCCTGTCTACAAGGTTCTTATGCGTCTCGATATGCCCGAAAACCGCCCCGTCTATTTTCTCTCCGTTGTCCCTTAAATCACGGACCACTTTTTTGAATTCCTGTTCATATGAAATAAAGTCCTTATGGATAAGGGGAATTCCAAGAGCTTCAGCCTGTGCA # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4348-4760 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQY01000057.1 Methanosarcina sp. 1.H.T.1A.1 scaffold108_1_size7856-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4348 37 100.0 36 ..................................... GGTGCGGAATTTGGAAACGTTTTTCCAGGGGAGAAA 4421 37 100.0 40 ..................................... CCAGCAGGTTTGACAAAGACGTTCAGAAGACCTTTGCCAA 4498 37 100.0 37 ..................................... ATTTTAAGCTTCTTTAGAGGCCTTCTGTAAGGCTCTT 4572 37 100.0 40 ..................................... AACCACCCGTATATACACGCAGTACTTCTCACAAAAACAT 4649 37 100.0 35 ..................................... CCTCATTGGCTTTTTGTTCCAGTTTTTCTAGCGAC 4721 37 89.2 0 ...GT....A...T....................... | GT,C [4732,4736] ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 98.2 38 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TTAACTGGAATCGTTATTTCTATTGAAGCACACATAGTTACAGATATAATATACACTAAAGCAAAAAGAAAATCCACTAAAATAAAAAAGAAACTAAAAAATATTCGCACCACCAAATCATAAATTTCTACATTCTATTTTCTACATTCTATTTTCTACATTCTATTTTCTACATTCTATTTTCTACATTCTATTTTCTACATTCTATTTTTTAGTCAGTTTTTATAGAATGACATGTCAGGCGGTTGTCGGTGGGATATAATGTTTACTCTTATAGTGGGGCTTTGCGTTGGGTTGATCATTGATTGTTAACATGAGCCGATAATTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTCAGATGTTTCCAAACCATCAAAAACCCTGATTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTCATTTCAAGCCTTTTCTGGCCAAACGCCGGAAATTTTTGCCCT # Right flank : CTCTTCCTGTATTTCCATTATCCCGACAATGCCTCTGTCGAGAAGTAGCTTCCATAAAAAATGCAAAAACCAAAACCTAAAATAACCCCCAAAGTAATTATTTACCAGGGAGAATAGCCATGACCAGCGAAACCGAAACTCCGGAATGTTGTCCTCCGTTTGATCCCGCCCCCTGGGATGGAAAAGTCTTTGATTGGAACAATAAAAGGTTCATCAGGGATTCCGTTACCACACAGCATTACATGCCCCTGAACTTCGGGGAAGTAATAATGAGGATGAACGAGAAAGTTGCCAGGGCTGGGGCGGAAGTGCCAGATTGGCTCTGTCTGTCGGACCATACCTCCGAAAGCAATATGGACCTCTATCTGGCTGTTGACAGAGCGGTCGATGGAGCTGAAAACGTAACCCTGAGCGGGAAGTTTTTGAGCAAAGTGTACGAGGGAGATTTTGAAAAAACAGGGGAATGGTGTGCGGACTTTGAAGGCTATGCAAAAAGCCAG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA //