Array 1 1997726-1997453 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076538.1 Amycolatopsis aidingensis strain YIM 96748 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1997725 29 100.0 32 ............................. ATGTGGTTGTGGATCATGTGATTCCAGACGGC 1997664 29 100.0 32 ............................. AAACCAGCCGGGTATCGGTACAGCAGCGGGGC 1997603 29 96.6 32 ............................G CTTGCGCTTGAACCAACGTTGCAACACCCATC 1997542 29 93.1 32 .....................G..A.... ATCAGCGACTATGCCGCCGCAGGCCGCACCAC 1997481 29 72.4 0 .....T.......G.......CC.TG.AT | ========== ====== ====== ====== ============================= ================================ ================== 5 29 92.4 32 GTCTTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GATGGTAAGGAAGTCGCCGGTGGCGTGTCCTACGGGGGCGATGACCTGTGACGGTGATCGTGGTGGCCGCCTGCCCGGTGGGTCTGCGCGGCCATCTCACCCGGTGGCTGCTGGAGATCGCGCCCGGGGTGTTCGTCGGCACCATCAACAGCCGGGTGCGGAATCTCGTGTGGCTCCGGGTGGTGGACATGGTGAAGACCGGCAGGGCGATCATGGTCCACTCGGCGCCGAACGAGCAGGGACTCGCCTTCACCGTGCACGATCACGAGTGGGAACCGGTCGACTTCGAGGGCATCAACCTGATGCTCCGCCCCGCACCGGTGGACGATCCGGTGCTGAAGAGCGACGCGCCTCGGTCGGTCGGCTGGAGCCGGGCCAGCAAGCGGAGACGTTTCGGCCAGCGGTGACTCCCCGCGCATGGCCCGATACAACGAAGCCGCCCACGGGGAAAGGTAAAGCGAAAACAGTGTTTCGATGGGCATCGTCGCAGGTCAACAAGT # Right flank : GGGCGGCCAACGCATGCGCGTGGAGGGCAAACGCGTGCGCGTGGGCGGCAAACACGACGGGGAGGTGTGTTTGCCGCCTGCATCCACGCGTTGGCCCTCCACATGCGCGCGTTTGCCCGCCACGTCCACGCTTTGGTCGTTCGGGAACGGGTTACGCGGCCAGGGCGAGGATGAACATCGCGCTGGCGGCTATGGCGGCGAGGGTGCGGACGTGGTTCCAGGCGGTCCACACCGAGGCGTAGCGGAACCACCGTTCCGCGCTGCCGGGGGCCTCCGGATCGAGGGTGGCCAGCGCGTTGTTCCTCGGCACGTGCACCACGATGGTCTCCAGCACGGTGCCGATGACGTACAGCAGGCCGCCGGCGAGCAGGTAGCCCGCGCCGGGTTCGGACCACCGCGTGATGGCCATGATCCCCACCGGGACGCACACCAGTCCGGTGCCGAACAGGGTGCCGAGGAAGAGCGGGTTGAGCACCACCACGTTGATCGACTGCATGGCG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2007022-2007839 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076538.1 Amycolatopsis aidingensis strain YIM 96748 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================================================== ================== 2007022 29 89.7 32 ...........GCA............... ACCTCGGCTCGGGCGAGGGGCGACGATGCCTG 2007083 29 86.2 32 ...........GCA..............T CGCACGGTTGAGCGGATGTACGACGCTGCGTT 2007144 29 86.2 150 ...........GCA..............G GCCGGTGAGGTGATCGGCGCGGTCATGGACGAGTGCTCCCGTGCACGCGAGGCCGAGGCGTAGCCAGCCGGCTCGCGGGCGGCCTAAACTTGCACCGCAAGAGTGAAGCAGAAACAGTGTTTCGGTTTCTATCGTCCCAGGTCAATTAGT 2007323 29 100.0 32 ............................. GGCCACACCGTGGCGGATGCCCTGTCCTGGCG 2007384 29 100.0 32 ............................. ATCACCCGAACGCACTAAGTCAGCCCGACCGG 2007445 29 100.0 32 ............................. GGCGTGCTCGGCGCGCTGTGCGGCCAGGGCAA 2007506 29 100.0 32 ............................. TTCCCCGCGGGCTCCTCGGCCCGCCGCCAGCC 2007567 29 96.6 32 ..........T.................. AACTGTCCACATACGCCGACTCCACAGGCATG 2007628 29 100.0 32 ............................. GTGATCCCACCAGCGTCGCCGGACGGCTGCGC 2007689 29 96.6 32 ............................G CGCAGCACGGCCACCGGGTCGTGCCCGCCCGG 2007750 29 100.0 32 ............................. ATGCAACGGCGCAGGAGTAGTCCATACCGGCA 2007811 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ====================================================================================================================================================== ================== 12 29 96.0 43 GTGCTCCCCGCATGCGCGGGGATGGTCCC # Left flank : AACATCGTCCGCGCCGCCAGGAAGGTTCCGGCCGAGCCTTTCGGTGACACGTTCCGGCAGCCATTGACCAACCAGTTTCCCGGCCACTGCGGCACTATCGGCCAGGTGCTGCGACAACGGAAGCCAGTGTGTCGGAGTACCGGTTTGTCTGTCGTAGTACGACTTCGCCCATGCCGAAAGCCACGAATTGACGGCGAGTTCCTGGCTGGCCGTCACGCTGCGTCCCACCTCATGCCCGTCTCCATCTGTCGGACTGTGCGCAGCGCTACATGCCGCGCTCCAGTTCACCCGAACAGAGCACTCTTCATGGCCAATTGCGTGACATTTGCAGGTCAATTTTCGTGATGAAGCTCGACTTGGAGATCAATATTCCAAATGGTGTGAGAGTTGACCATCCACGTCGCCGTCGTGTTCCGTCGCCGATGCGGTAGTGGGTTACGCTGCTTTCCAAAGTGAACGAAAAACCCCGAACTGCTCCGTATCGCCCCAGGTCAACAAGT # Right flank : CGCCGCGGCATCAGGAGTCCTCGTCGGAGTTGTGCTGGTCGCGTCGCTGGTCCGGCCTGTCGTCGCCGACGGCGTCACCCGAGTTCGTTGGGACGACGCCCAGGCCGTACTCCCGCTCGACGGCCTGGGCAAGGTTGTGGTTGAGTTCCCGGATCTGTCTTGTCAGCGGGCTGTCCGTGAGCGCCTTCATGATCTCCGCCCCTTGAACGGTCTCGAGGAGGTCCTGGAATTCGCTGGTGACCAGTTTGGTGGATGAAGGGCTCGCCGCGAGCTTCGCCAGGAGGCGCTGCAGCTCCGTACCTCTGACGGCAGCTGTCGACCCTGCTGCGAGCTGGGCAAGAGCGGTGAGGCGCGCAGGTGACAGCATCGGCGCGGCGGGGTTCATCGGACGTCGTGTGAGCTGGCCGGGGGTCGTATCGATCGTGGCGAGGAGGTGTTCGAGGAGTCGCCTGCCGTCCCGAGTCTTGAGCCCGTAGCGGCGGGCGTACGGCCCGATTTCG # Questionable array : NO Score: 4.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-1.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCCTGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2011463-2011921 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076538.1 Amycolatopsis aidingensis strain YIM 96748 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 2011463 29 100.0 32 ............................. CCGTACCTGTCGCTAACGGCGCGCACGACGGG 2011524 29 100.0 32 ............................. GCCGATATGGACAAGAGCCGGGTTGAACTCAA 2011585 29 96.6 35 ............................T AACCCTCTTCCTAGGGACCGACCACGAAAGCTGGA 2011649 29 100.0 32 ............................. TCGCCGCTGACCTCGGGAAGGCGGGGGCGAAG 2011710 29 100.0 32 ............................. GGCGCCGGTACGAACACGAGCTGCGGCGCCGT 2011771 29 96.6 32 ............................G GAAGGCGAATGGGACGGCCCGGCGAACGAAAA 2011832 29 96.6 32 ............................G TAGTTCCCCGTGTTGGTCCCGACGACGGTGCC 2011893 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= =================================== ================== 8 29 98.3 33 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : TTTTCGAGTACACGCCGGTTGTTGATCGGCTTCTCGCCACGCTCCAGTTCGCCCAGATAGCCGTAGGATAGACCGGATAACTCTGCTGTGGCACGGAGCGTGAGTTGTCGCCATGAGCGGATTTCCCGCAAGCGACGACCAAGGTCTGAATCCATCGCAGACACCTACCTCGCAGAGTAGACCTTTTCGCGTGCCCCCGGCCCGTCGACTGGGGCTTCCGTCCGCGAAGAGGCGCACCACCAGGGTAGTCACTACCTGACCGGGTGAACATGACCGAGGGGTCCATGTGTATGCGACTCAGCTCGTCGGCCGTTCCCGGTGTCACCGCGATACTCCGGCGTGGTCGGCTTCCGCCGATACGGAGCGGAATGCCTCTCGCGTGGGCGGTGTGGTCGTCCCGTGTCGTGCTCAGCCAGGTGCGGGCGGAGAGCCGCTAAACTTGCGTCGGAAGAGTGAAGCAGAAACAGCGTTTCGGTTTCTATCGTCCCAGGTCAATTAGT # Right flank : GAGCCTGGTCTGGAGCACACGCTGAGCGTCAGCAAGCACTACAACGACGTGATGCTTCACGAGCAGTAGTACTGAGCCGGGAACGGCCAGCTTCCCGGGTCACGTGTCCGGGAGTCTGGCTGTCCGGGCTTGAACGCTGGCCGGCAGAGCTGTACATGATGTACATTAAGTACATGTCTGCTGCTCATGCCGACGACATGGACGTGAACGTGACCGACGCTCGGGGTCAGCTACCCGAACTGCTCGACACCCAGGTGCGAGACGGCGGCACTGTGTTCCTGACCCGCTACGGGCGCCGCGTCGGTGCGCTCGTGCCTGCCGACGTGGCGGAGCGTCTGGCGGAGCTTGAGGACGCCTACTGGTCGCAGCGCGCGGCCGCGGTGCTGGAGAAGGCCGAGCCCACGGTGTCGTGGGATGAAGCCCTGGCATTGCTGGAGGCCGGGGACACCAGCGAGTGAGCTACCAGATCCGGATCACCCCTACCGCGTTGAAGGCGTTGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2012696-2013512 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076538.1 Amycolatopsis aidingensis strain YIM 96748 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================================================== ================== 2012696 27 86.2 152 ............--...T..........G GCCCTGCGCCGTGACTGGCAGCTGTTCGGCGGCACTCCCCGTGCACAGGCCGAGTCATAGCAGCCGGATCGTGGGCGGCAAGGCGCTAGACTTGCGTCGGAAGAGTGAAGTAGAAACAGTGTTTCGGTTTCTATCGTCCCAGGTCAATTAGT 2012875 29 100.0 32 ............................. GCCGTGCTCGAGCTGGTGGCCGAGAACCTGGT 2012936 29 100.0 32 ............................. GAGATCGGGTTACCCAAGCGGGACTGCGCCGA 2012997 29 100.0 32 ............................. ATCGTCGTCTTACCGCTCTGCCGGGGCACCGT 2013058 29 100.0 32 ............................. GAGGTCAGCGAGGATCCCGCGGCCACCATGAA 2013119 29 100.0 32 ............................. TCACCGTTATCCATAAGCAGAGTGAAGTCCAC 2013180 29 100.0 32 ............................. TGCTCGTTCACCCAGTTCCGGATGTCGCCCAT 2013241 29 96.6 32 ............................G TCGGCGCGCTCGTTGGCGATCCAGCGACGCAT 2013302 29 100.0 32 ............................. CTGGACAGCACCGACACCGCGCACGTCCGGGA 2013363 28 96.6 32 ....................-........ GAGCAGGGATGGCGCGAAGCGATCCGAGAGGC 2013423 29 100.0 32 ............................. AGCCGAGGACGCGTCCGGGTGCTGGCGCTGGC 2013484 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ======================================================================================================================================================== ================== 12 29 98.0 43 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : TTCCTGACCCGCTACGGGCGCCGCGTCGGTGCGCTCGTGCCTGCCGACGTGGCGGAGCGTCTGGCGGAGCTTGAGGACGCCTACTGGTCGCAGCGCGCGGCCGCGGTGCTGGAGAAGGCCGAGCCCACGGTGTCGTGGGATGAAGCCCTGGCATTGCTGGAGGCCGGGGACACCAGCGAGTGAGCTACCAGATCCGGATCACCCCTACCGCGTTGAAGGCGTTGCGCAAGCTCGACAAGCCAGTGCGTCGGCGCATCCAAACCGCGATCGACGGGCTCAAGGATGCGCCGCGACCGCCGGGCGTGATCGCGCTGCAGGGCGTTCCGGATGCATACCGTATCCGGGCAGGTGACTATCGCATCGTGTACCAGGTGAAAGACGATCAGCTGCTCGTGCTCGTCGTGGACCTTGGCCACCGCCGCGAGATCTACAAGAATCTGTGACCAGCGAATATCCGAAGTCTTGAACCTCCGAACTGCCGAACGTTGGGAGTGGCGTGG # Right flank : CAGGTCGGTCGCACCGGCACAGTGGCTACGGCACTGACGAACGTCGCTGGGCAACCGGGTTTTGTACGCGTCTTGTACGCGGCCGGTCGACCATCCGGCCATGGCATGTTCACAGTTCCGGCGCATCGCCGGCAGAACGGTGACCGTGTTCGCCGCCGTCACTGGATTGGTGCTGGCGGGGGTCGTTCCGGCGGGAGCGTCCGTCGACGGCACGGTGCGCACCGCGGGCGGCCCCCTGAACGTCCGCCGCGCGCCCACCACCACGTCCACCGTGGTGGGTTCGGTGGACAACGGCACCAAGGTAACCATCGACTGCCAGACGCACGGTACCCGGATCAGTGGCGAGCTGGGCACCACGACGCTCTGGGACTACGTGCCCTCGCTGGGCGGCTACGTCTCGGACGCCTACATGTATACCGGCTCGGACGGGCAGATCGCGCCGAGTTGCGGGGTGGGCACCGGCAGCGCGGAGTGCTCCACCGGGGGTTGCGCTGGGGAGG # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-1.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 6020501-6019983 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076538.1 Amycolatopsis aidingensis strain YIM 96748 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6020500 29 89.7 32 TGT.......................... CGGTGACGGCTACGCCACTCCTCCTCGCCGCG 6020439 29 96.6 32 ............................T CACCCGGCCAACAGGAACCTCCGCATACCCCC 6020378 29 100.0 32 ............................. CGGCGGACGGCCTCGATCGAGGGTTTGGTGTA 6020317 29 96.6 32 ............................G GCCAAGCTGGCGGACCCGCACCACACGGACAA 6020256 29 100.0 32 ............................. ACAAACGGTACGTGGGCGCGGGTCAACGTGGC 6020195 29 100.0 32 ............................. GGATCAGACGGAGGTCGTAGCCATGGCCGTGC 6020134 29 100.0 33 ............................. TGCTGCGGGGCGACCAAGAACCCGCCCTCAGGG 6020072 29 100.0 32 ............................. GGGATAAGGCGGCGGACCTTGTTGACGAAGTC 6020011 29 86.2 0 ........................A.GGT | ========== ====== ====== ====== ============================= ================================= ================== 9 29 96.6 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : AGGGCTTCACCGCGGCCTTCATGTCCACCTTCCCGCACGCGATCGACTTCGCCGCGGTCCGCACCTCCTCGCTGACCTCCGCCGCCGAACTGACCCGCCGCGCCAAGGGCACCGGTCGCCTGCGCCCCGATGCCGTCGTGGACGACATCGTCCTCATGATCATGGCCAACAGCGGCATTCACGCGAGTACACCGGCGGCACGAGTCGCGGCCTCCCGACGCTTCGCCGCGCTCATGATCCAAGCGTTCCAAGCCTCACCCGTGTCCTCGCCGCTACCACCAGTGCCCAGGTTGACGCCCGTGATGTCGGTACCTTCTGCCCAGACCGGCAGGTGAAACGCATGGTGATCGAGGTCGAGTACCAGACCTGCGGCAGGGTGACCGAGCGCTTCTTGCGCGTCGGAGTCCATACGAAGGCGGCTGACCCCGCTGCTTCGACTACACTCGCCACGAAGTGAAGTAGAAACAGTGTTTCGGTTTGCATCCTCGCAGCTCAGGAAG # Right flank : GCCTGGCTTGCGTCCGGACGACTAGGCCGGGCAGGGGAGCGGTCACCCTGCCCGGCGGCCCCCTGCCGGTCTACTTCAGCTCGGCGCTGGTCTTGTTCAGCACCTTCCGCGCCACGATGAGCTGCTGGATCTGTTGCGTGCCCTCGAAAATGTCCAGGATCTTGGCGTCCCGGCTCCACTTCTCCAGCAGGGAGTCCTCTGTGTAGCCGAGGGTTCCGGTCAGCTCCACGCAACGCAGGGTGATGTCCACAACGGATCGTCCCGCCTTCGCCTTGGCCATCGATGCCTCCAGCGAGTTGGGCTTGCGGTTGTCCGCCATCCAGGCCGACTCCAGGGTCAGCAGGTAGGCCGCCTCGTAGTCGGCCTCCAGCTGCAGGTACGCGGCCGCGGCGGCGTGCTGGCTGTTGGCAGGCTTGTCGTAGTCGACCACGATCCCGGCCTCGGCGAGGATCCGCTCGGTCTCCTCCAGCGCGGCCTTGGCCACTCCGATACCCATCGCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //