Array 1 1-3278 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZHP01000020.1 Moraxella catarrhalis strain COPD_M37 NODE_20_length_29078_cov_16.0051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 1 28 100.0 32 ............................ AATATTTGGTATAATGGTCGGCTTGGTCAAAG 61 28 100.0 32 ............................ AAAAGACATAAGGTTGAATGATGAGTGATGAT 121 28 100.0 32 ............................ ACATTACTTGCAGATGGGTAGTAGTCTAACTC 181 28 100.0 32 ............................ AAGGTATCAGCCCACCAATCGACATCTGAGCG 241 28 100.0 32 ............................ TATAGAGTGATTAGATGCTCACGAGTCATTAG 301 28 100.0 33 ............................ ATACATCGCCTGCTGGCGTGTTAGCAAGCCCTA 362 28 100.0 32 ............................ AAGCATTAATAAAATTCCAACGCTTGAAAGCA 422 28 100.0 32 ............................ TTAAGTAGAAAAACTGAGGAGAATGGCAGTGC 482 28 100.0 32 ............................ TTTTGAAATGATTAGACAATCTTCTCCGTTAA 542 28 100.0 32 ............................ AAAATCTTTCTCTATCTTTTCAATATCTAGTA 602 28 100.0 33 ............................ ATCATGCAACTCTACCAAATCCCAATATTCTAA 663 28 100.0 32 ............................ GATGATAGCGATCGTATCACGCACATAATTGT 723 28 100.0 33 ............................ GTTTAAAATTGATTTAGACGCTTTGTTTGTCTT 784 28 100.0 32 ............................ AATATTTGGTATAATGGTCGGCTTGGTCAAAG 844 28 100.0 32 ............................ AAAAGACATAAGGTTGAATGATGAGTGATGAT 904 28 100.0 32 ............................ ACATTACTTGCAGATGGGTAGTAGTCTAACTC 964 28 100.0 32 ............................ AAGGTATCAGCCCACCAATCGATATCTGAGCG 1024 28 100.0 32 ............................ TATAGAGTGATTAGATGCTCACGAGTCATTAG 1084 28 100.0 33 ............................ ACTTTCAATCCAGCACAAAATAGGCTCAAACCG 1145 28 96.4 33 ...........T................ AAAAGCTATCGTATTTTAAAGCGGTAGGGTCCT 1206 28 100.0 32 ............................ TCTGGTTGGTATTTTACATCAAACCCTTTAAT 1266 28 100.0 32 ............................ TTTTAAACCTGCACAGAACAATGAAAGACCGA 1326 28 100.0 32 ............................ TTTTAAACCTGCACAGAACAATGAAAGACCGA 1386 28 100.0 32 ............................ TTTGCTAATTGCATGGAAGACATTGCCTAGCC 1446 28 100.0 32 ............................ CCGAAAAGATTAGGGAAATAGCTTCCCACTTT 1506 28 100.0 32 ............................ AATAGGCGTGATGCTTATCCTTGGATGATTCA 1566 28 100.0 31 ............................ TCTAAATCTGTTCCGCTTACAAAGATAGGTT 1625 28 100.0 32 ............................ TTTACTTGTACAGCCCCACGCTTGTATGTCCG 1685 28 100.0 32 ............................ TAGGGTGATGCGCCTGCCAGGGTTTATCCATC 1745 28 100.0 33 ............................ AAAAGCTATCGTATTTTAAAGCGGTAGGGTCCT 1806 28 100.0 32 ............................ TTCATCTGGCACCATGGCAGGTTTGTATTTTA 1866 28 100.0 32 ............................ TATCCTTGCTTTCTCTTATCTTACTAAAAAGG 1926 28 100.0 32 ............................ GCTTTAGAAATCTCTCCAGGTTTTCTAAATCA 1986 28 100.0 32 ............................ GTACGACGCATAAGAAGATTTAAAAGTTCTAT 2046 28 100.0 32 ............................ TCCTGCTTGTGCCAAGCCTATTACTAACGTAG 2106 28 100.0 33 ............................ TGTTTGTGATCGTGATTGTAAATGCTGCATGAA 2167 28 100.0 33 ............................ AACATAACTAGTCTCCTTAAATTTCAATTAGTA 2228 28 100.0 32 ............................ CTGTTTTTGTAGATTAAACGCTTAGCTACATT 2288 28 100.0 32 ............................ TAGATACTGCATAGGATTAAATTGTTTCATGT 2348 28 100.0 32 ............................ ATAACCTGCTAAAGTCGTTGGCTTATTGGTAA 2408 28 100.0 31 ............................ AACTGTGCGTCAGTCAAATCATCCGCATTAA 2467 28 100.0 32 ............................ CCGAAAAGATTAGGGAAATAGCTTCCCACTTT 2527 28 100.0 32 ............................ AAAGACACGCACATGACAGGCGTATCACAAGG 2587 28 96.4 32 ..........A................. AAGGATTTAACTTTATACTTGTTACTGGTATT 2647 28 100.0 32 ............................ AGTAGGTACAATCTTAGCAACTGACGCAGTAG 2707 28 100.0 31 ............................ AACTGTGCGTCAGTCAAATCATCCGCATTAA 2766 28 100.0 33 ............................ CTTGTTACATCTGATACTAAAACATCTTGAAAA 2827 28 100.0 32 ............................ AATAGGCAAGCTATCCGCATTGCCCTTTAAGC 2887 28 100.0 35 ............................ ATTAACACCGTCCGCCAGCTTGGCGTTGGTGGCTT 2950 28 100.0 32 ............................ GTCTGATTTTGATACATTGCTTTTGAACTTTT 3010 28 100.0 33 ............................ ATCCACATAGGGGCATGCAAAACCATCATCATC 3071 28 100.0 32 ............................ TCTTCAACGGTTGCTTGGGTGATTAAATAGCT 3131 28 100.0 32 ............................ GTAATGACTTCCCCAGTCTTGATATCAAACGG 3191 28 96.4 32 ..................T......... GTCAATGCGACTGTTTGACAGCTTGAGCTCGC 3251 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 55 28 99.8 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : | # Right flank : ATTTCGTTCTACAACTACGCTGATTATTTAAAATTTTTGTACCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAGCAAACCACCGAACAAACCACCATGGAAGAGATTACGGCTGAGGCGACAACCGAGCAAGTCGAAGCACTTCACAGCCAAATCCAAGCACTAGAAAGTGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATTACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTCCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGCCGGTGATGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 39-304 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZHP01000047.1 Moraxella catarrhalis strain COPD_M37 NODE_49_length_343_cov_10.2731, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 39 28 100.0 32 ............................ TTAAGTAGAAAAACTGAGGAGAATGGCAGTGC 99 28 100.0 30 ............................ TATAGAGTGATTAGACGCTTTGTTTGTCTT 157 28 100.0 32 ............................ AAAATCTTTCTCTATCTTTTCAATATCTAGTA 217 28 100.0 32 ............................ AATATTTGGTATAATGGTCGGCTTGGTCAAAG 277 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TAGAAAAAGCATTAATAAAATTCCAACGCTTGAAAGCAC # Right flank : AAAAGACATAAGGTTGAATGATGAGTGATGATCTTCACG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //