Array 1 1764769-1763146 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020016.1 Lacticaseibacillus rhamnosus strain WQ2 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1764768 36 100.0 30 .................................... AAGAAACGATCCCGAGTTTCTGGATTGCTT 1764702 36 100.0 30 .................................... TCATCAGTATTCATGGAAATATAGGATGCT 1764636 36 100.0 30 .................................... ATCATCGAATCTTTGGGGACCTTACCACTT 1764570 36 100.0 30 .................................... GATTGTTTCGGTTGCTTCTGTGATGCCACC 1764504 36 100.0 30 .................................... ATGACTGGTTGCCGGTAAGCGATGAGTTCA 1764438 36 100.0 30 .................................... CATACTTGTATGAGCACTTTGACTTGTCAA 1764372 36 97.2 30 ....................T............... ACCGTTTGTGTTGCATGAATATGATCACTA 1764306 36 100.0 30 .................................... AGGTGCTATGCCGCTTGGCATGACGATTGA 1764240 36 100.0 30 .................................... AATAATATTGTGCCAAAAGGTAGTATTCTA 1764174 36 100.0 30 .................................... TCCAAGGGCATTCCAGATTGCAGAAGCCCC 1764108 36 100.0 30 .................................... GGGTGATGCTGACAAGATCAAGACGGCTGT 1764042 36 100.0 30 .................................... CGCCTTACGGGCGACAGCTAGGCCTATGGG 1763976 36 100.0 30 .................................... AGATCGAGCATTACGGCTTGCAAGACTGCG 1763910 36 100.0 30 .................................... ACAGTTGAGAAAAGAAAATACGCATTTAAA 1763844 36 100.0 30 .................................... AAAAACACAAATGGCCGCTGCCACCTTATG 1763778 36 100.0 30 .................................... AAAAAAGCCGCGGAACTTCTCGGGCTAGAC 1763712 36 100.0 30 .................................... CACAGTGCCATTCCACAAACCCGACAGAAA 1763646 36 100.0 30 .................................... CGAGCTTGCGGCCAATATCAAGCTATATGC 1763580 36 100.0 30 .................................... GTGTGATCATCATTACCTCTCTGCCACTAA 1763514 36 100.0 30 .................................... ATCGCATACTTCATGATGATTGATGCCAGT 1763448 36 100.0 30 .................................... CTGTGTTCTCACGTGTCAACAATTATTTCA 1763382 36 100.0 30 .................................... TTGTGGTGCCAAAACGGGTTGTTGTCGAGA 1763316 36 97.2 30 ...................................G TTTCAGCAAATATGACGTCTAACATGCCTC 1763250 36 94.4 30 ..................................AT ACTTGGAAAAGTTGCTATGCAGTTTGAATA 1763184 36 83.3 0 .......................AA.A....G..AA | T,CA [1763149,1763155] ========== ====== ====== ====== ==================================== ============================== ================== 25 36 98.9 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAGCTGGATTTGGACAAGTTATTCCAACGCTTGATCATCAAGAAGGTAAGTCAATTGATAGAGGATCGGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTAAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTGAACAAGCTGTTAGATCAGGTTAAGGAAACATCGTTAGAATTACTTCTCATTGAATTTTCGGATGTCGAACGTAGAAAGTTTTTTGAGAGGTGCCAGTATATCTATATTGACAAAGATTTCATGGATAGCCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : CCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTATCAACAGGCGTTCAAATCCATTTACGACAAATATCAAGATCGGGAAACCAACCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAAGTTCAAACGGCATAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGTCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCTAAATTGGTACATTTGTATCGTAAAGTCGGCTTTCAGCAGCTGCCAGATCGGGAAACAACGATTAATGAGCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //