Array 1 43904-42693 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYW01000002.1 Leptotrichia sp. OH3620_COT-345 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 43903 30 100.0 35 .............................. CGACGAGCTGAGGATCTATAGAGCTTGAAGAGAGG 43838 30 100.0 36 .............................. AACTAAATTTTTGAACTTCCCAGATTGGTTTTGCAA 43772 30 100.0 35 .............................. GAATATAAGAATGAGCGTAGCTGGCTTGAAACGTT 43707 30 100.0 35 .............................. ACAATAGATGAATTTAATGAAAACCCAGAAAAATT 43642 30 100.0 35 .............................. TCAATAGTCGCTATTGCTCTATTCAATGCCGTAGT 43577 30 100.0 36 .............................. ATTGCACTCTTTAACTTCTTGAGGTATGTAATCTCT 43511 30 100.0 36 .............................. AGGATTTATTGAAAGACGCTATAGATTCAATAGTCG 43445 30 100.0 35 .............................. GGCAGTAGTAATGCTTTTTAGCCTTTATCTACTGT 43380 30 100.0 35 .............................. AGATGAGGATGTTCGCTAAGGTCAATATTAAGATT 43315 30 100.0 36 .............................. AAAGAAAGGAATTAAGAGAGAAAATATTTTATGAAG 43249 30 100.0 35 .............................. CCTCTTAGTTTTGTTGACTTTTTTCTACAAAAAGT 43184 30 100.0 36 .............................. TTGTATACGTATTTTATTGCTTCTGGCAATTCTGCC 43118 30 100.0 36 .............................. AGCATTTTGGAGTATTGGCTATTATTGCGGAAGATT 43052 30 100.0 35 .............................. ATAAAACATAAAAGTGGTGAATTTTCTATAGATGT 42987 30 100.0 35 .............................. ACTCTATTCTTAGATGGAAAAGTAGCTAGCAGGAT 42922 30 100.0 36 .............................. TATATATTTCCTATAACTTCTAAATAATTGTTAGCA 42856 30 100.0 36 .............................. GAAAAAGTCTAAAAGAGGGCTATTATGATAATTTAA 42790 30 100.0 38 .............................. CAAAGGAATACTTCCTTCTTCGCTGCTTTATTGATAGC 42722 30 93.3 0 ..........................TT.. | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 99.6 36 ATTGAATATCAACATAGGATGTATTTAAAT # Left flank : GAAAAATTAAAAGTTCGGCAGATCCTGCAGTAAGAGTTCCGGCTATGATAGAAATTGAAAAAATAATAGCGGAAGAAGTGCCTGTTGCACCATTAAGACACGGTCAGAAAAGATATCTTGTAAATCCTAAAGTTAAAGGAATGCAGTTTACTGCAATAGGTGGAGAATATTTCTTCGGAAATTTAAGTATAGAAGAAAAATAATTTAATAAATTTAATATTAAAAAAAATAGAGACCCGATGGAATTTTTATTTTCGGGTCTTTTTCAATTTTCATAAAAAATATTAAAATAAACATAGGTGGCAGTTTATGCATTTAGTGTTAAAAATAATATTATTTCCCAGCATAATGTTATAAAAAATATCTGAAAATATAAGTTTTATTATATTGCAAAAGAATTTACATAAAAATAAGTTGTAAGTTGGGATAAAAAAGTATATAATTAAATATAGCAGAGTTTTATTATTATAAAGTATATCAAAAATATAAGATTAATCGGT # Right flank : ACGGAATTGAAAAAATTAATTGAAATAGATAAAAAATTAAAATAGTAGTGAAAGAAAAAATGATAAAGAATATAAAATAATATTTGATTGTAGAAATTTCAAAAATAATAAGGTATAATTATATAATAAGAAAATGAAAATTAAAAGAAAGTGAGTGTGGAAAATGAGAAAAATATTATTAACTCTTGCTGTGGTGATTTTCATAATGGCTTGCGGCGGAAATTTGAAAAAAAGTAATACAATATCATTGAATTTAAGGACAGAACCTTCTTCAATAGATCCGCAAATAACTACCGATGTAGCGGGAGGAACAGTCGATGACTTGATAATGGAAGGCTTGCTGAGAAAGGATAAGGACGGAAAATCTGTGGCAGGACTTGCCGAAAAATGGGAATCCTCTTCTGACGGATTAGTATGGACCTTTCATTTAAGAGAAGGATTAAAATGGTCAAATGGGGATCCTATTACTGTAAAAGATTTCAGAGATGGCTGGATAAGAG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAATATCAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 1-955 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYW01000009.1 Leptotrichia sp. OH3620_COT-345 scaffold_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================= ================== 1 29 96.7 36 -............................. CAGTATACACAATTTTCCTTTGTGTACAATGTATAG 66 30 100.0 35 .............................. TGTTCGCTTCCTTCCTCTGGAGAATATCCATGTAT 131 30 100.0 36 .............................. TTGGATAATTCCGCTTTGGAACTAAGTAAAAGGCAG 197 30 100.0 36 .............................. ATGGTTCTTTCTGCGTCTCCTTGTATATGTGCTGTT 263 30 100.0 35 .............................. GCTGACGCAATATGAAAGTGAAACACCAACAGGAG 328 30 100.0 35 .............................. CTTGGCAAGACGGAAGAAGCGTCTTACAAGTTTAC 393 30 100.0 36 .............................. CTTGTAGTAGATGGAAAGAGTTATAGCTATAGTGGT 459 30 100.0 36 .............................. AACAATGGGGATTTGGTTATGTGTTTGGCTGGTATT 525 30 100.0 36 .............................. TATAAATTAAATAATAAAAATAAATTTACTACTAAA 591 30 100.0 36 .............................. ATCTACGGTATAAGTTGTCTTATTCATTAAAAATGC 657 30 100.0 34 .............................. AAATTACAAAAGATACCATATACCAAAAGCACAG 721 30 100.0 36 .............................. TAACATTGGAGAAAAAGAGTTTTTTGATAAATACCA 787 30 90.0 109 .............C...A..A......... GACGGTTTAAGAAAGCCGCTTTTTTTAATTTAAGTATTAAATAGAAATATAGCTTTTTAAAAGAATTGATTTTAAAGTGAAATACAGAATTAATAATTTACAAAAAAAT 926 29 76.7 0 .A.-....T...A....T..A......C.. | C [951] ========== ====== ====== ====== ============================== ============================================================================================================= ================== 14 30 97.4 41 ATTGAATAGAAACATATGATGTATTTAAAT # Left flank : | # Right flank : TATAGCAAATAAAAATAAGAATTTTGAAATATTTTTAATTAAAAAATTATGATAATAATTGAAAAAGAAAAAAAACAAGGTATAATAAAATTAGATTGAAGTACAGCAAAAAAGTATGATAATCAAAAACAGAAAAATTTATAAAGAAAGGAAGGAATTATGAAAAAAAGATTATTAAACTGCTTTGCCAGTGATTTTAGGAAAATGAGAAAAGATGACTTAAAAAATGCTATTAAAGCAAGTGAGGGAAGAACAATTCTTTCAGAAAATGTTGCAGACAGGAGAACTGTCACAGGTGATATTACAAATAGTGAATTGGCAAGAGCTTTTGGTGCGGATTTAATTTTACTAAATGGATTGGATGTCTATAATCCGATCATAGCTGCTTTACCTAAAACTGATGAACCGATAAAATTATTGAAAAAACTTACAGGAAGACTCGTAGGACTAAATCTTGAGCCTGTAGATTTAGAGGCGGAAATGCTGGAAGAGATGGAAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAATAGAAACATATGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 1-852 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYW01000008.1 Leptotrichia sp. OH3620_COT-345 scaffold_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================================================================================================================================================= ================== 1 30 100.0 36 .............................. CTATACATTGTACACAAAGGAAAATTGTGTATACTG 67 30 100.0 36 .............................. TCTGTCATTAAAAAATCACAATCAAATTAATGACTG 133 30 100.0 36 .............................. CCCTTTTTTTTGTCTTTTTTTCCATACTATACCTCT 199 30 100.0 36 .............................. AAACATTGCTCTCATTGATGTCCCAGCTTTAGCCGT 265 30 100.0 36 .............................. CAAGCTACACTTTAAGGAACACAAAATGCTCGTTAA 331 30 100.0 35 .............................. CCCTCTAACACTTGCTAAAAAACCATTTTTACCTG 396 30 100.0 36 .............................. CTTAATTTTATTTTTTTATCAGTCATTAAATCATTA 462 30 100.0 35 .............................. ATAGTATAACTTCCTTATATTTTTCGGTCTTTGCT 527 30 100.0 37 .............................. CAGCAACAAACAACACAATTTCTTTAGAGTTTCAATG 594 30 100.0 199 .............................. GCCGATTTATTCTATTATCTCTAATATTTTTTATAAGGAAAAATCTCAATTATATCTGTATTATACACTTTTTTTTCCCAACTAACAACATTTTTTTGAGAATTTATCTTTTCATATTTAAAAATCAGAGTTTTCATATAATTTATACCTCATTAGGTTGGGAATTCAATTTTATAAATAACTTCAAATGCTCATTATT 823 30 70.0 0 ..C.T....TC.A.A......A....AT.. | ========== ====== ====== ====== ============================== ======================================================================================================================================================================================================= ================== 11 30 97.3 52 ATTTAAATACATCATATGTTTCTATTCAAT # Left flank : | # Right flank : TTCTTCAGACTTTTAAAAATATTACTCATCTCAGTCCATAATTTTATATTCATTTTTAAAAAATAGAAACTTCAATTTTCTATATTAATAATAATACCTTTTCAATAATTTTAAGGATAACAAAAATTTTTATTCATCTTACTCATAAAAATCTAAAATAATTAATAAATATGATTTTTATATCGGACATATTTCTTTTAAACTCAAAAAATCTATTAGCTATTTTAAGAAAAAAAATTATCAAGATTTTCTTTTTATTAAAAATAAAAGTTAAAAACTTTTGGCATTAATTTATTTTACTTTTCTATATGCAAACTAAAAATGATTACATAAAAATTTTATCATTATCTGTATCTAAATCCCTAAAATTATTGTTAATACTTTCCTAAATTATATATTTTATTGTATATAATTTCTTAAAAGAAAATAAATTATACAATCTCTATAAGATAAAAAAAAAATAAAAAATAAGATAAATAGCAAATTCATATTATTATATT # Questionable array : NO Score: 4.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-1.67, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCATATGTTTCTATTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 95082-94376 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYW01000008.1 Leptotrichia sp. OH3620_COT-345 scaffold_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 95081 36 100.0 31 .................................... TTTATATGCCCTCTTTAATTTTTCTAATTTT 95014 36 100.0 31 .................................... AATTATTCTTTTATCCATACATATCTTTTTA 94947 36 100.0 30 .................................... TTAAATGTAACTTCATCCCAAAGTTATAAT 94881 36 100.0 31 .................................... AAATTACAAAATTGAAAGAATGGGAAATTAT 94814 36 100.0 31 .................................... TAAAATTATTTCATTCATATTTATCTGCCTT 94747 36 100.0 32 .................................... AAATTAACAGAAAATATCGTGCAGGCAATCGC 94679 36 100.0 31 .................................... TTTCTATCTTTCCGATTATGCTTCCTGCTGC 94612 36 100.0 30 .................................... TTTATCTAAAACGTCCCCTTGTATTATTTG 94546 36 100.0 31 .................................... TTTTAAGATTATTATTAAATCTTTTTTTTAT 94479 36 100.0 32 .................................... TCTGCCGTTTAACTTAAAGACCAGTGCTTTTT 94411 36 88.9 0 .....................A.....ATG...... | ========== ====== ====== ====== ==================================== ================================ ================== 11 36 99.0 31 GATATGGACTACCTCAATATCGAAGAGGACTAAAAC # Left flank : TGAAAGTGTTGAAGCTGAAATTCCCGATGTGAGGATAGAAGATTATGAGTATTAAGTATATAGGATTGTTAATGTATGATTTTCCCATGCAGACAGATATTGAAATAAAGGAATATAATAATTTCAGAAAAATGATTATTAAAAAGGGGTATTATCAGATACAGAAATCTATTTATATAATGAGTTCCAATACAAAAGAAAGAATAGAAACGACTGAAAAGCAGATATCCGTGATGATTCCGAAAAATTCGTCAGTAAGGACATTGTTGCTGACAGAAGAACAGTTCAGAAAAATGAAGGTTCTGTCGGGAGAAATAACAATGGGAGAACTAATTTTAAAAAATAAAAATAGAATTTTGGAATATTAAAAAATCAAAAAATGTGGTATAATTAATATAAAAGGTGGTTCATATCATGAAAAAAATAAAAGAAAGTTTTAAAAATAATATAAAAACAGAAATAATATCAATAGTTATCTGTAATATCCCATTTTAGGATGG # Right flank : AGTAAACTAAGAAAAATGATTTAAAATAAAAATGAGGATTATATTAAAATGGAACAGGACTCAGACTCAATAAATTAAAAAATTTGAAAGAAAAAAAGAAGGGAAAAGATTTTGAAAAAATTTTTGAAAACAATTTTAATTGGAATTGCAATAGTTGCATGCAGTCAAAATAATATTGAAGCAAAAAATAAAGACATATCATCAAAAAATAATGACAAGAGTGCAATAAAAACAGCAAAGGAAGTTTCAGGAAAATATAGGAACTTCAGATACAGCTTAGAAGAAATGAAGGATATAGCCAATCCTAACAAACTTTCATGGAGAATATTTTATGAAAATCCTTCAAGAGGATCAGATGCAGAATGGTTTGATGCAGTTAAACAGGGGAATTTAGAAAAAGTGAAAAAAATGGTAGAATCAGGGCAGAATATTGAATCAAAGGATACAGGAAGCTTGAATCAGACAGCTTTAGGTTGGGCTGCTTTCATAGGATACGAAGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATGGACTACCTCAATATCGAAGAGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 2653-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYW01000016.1 Leptotrichia sp. OH3620_COT-345 scaffold_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2652 30 100.0 36 .............................. CTTCTCCTATATCCTCTTCTAGGAGCTTAATACTCT 2586 30 100.0 36 .............................. AAACTGTAGCACGGACACACGGTTACAAAGGGAGTA 2520 30 100.0 35 .............................. GAGTCTTGGAATATCTATTATAATATACTTAAGGA 2455 30 100.0 35 .............................. CCCAAAAAGATTTTTTTGCTGTCAAAAATTTTTTA 2390 30 100.0 35 .............................. GGGAAAAGATTTTTTAGGGAAGGAATGCGTTTAAA 2325 30 100.0 36 .............................. GTTATAAATAAAACCTTACTAAAATCTCCTATTAAA 2259 30 100.0 35 .............................. AAAAGAGAAACTTTTGATTTGATAACTAATATTGT 2194 30 100.0 35 .............................. GAAATATTTTTTGAAGCCATTTATATTTTTATCAA 2129 30 100.0 35 .............................. AATTAAATAAAAAAAAACAGGAGGAAACAAAAAAA 2064 30 100.0 36 .............................. GTAACAGGAATAAATTTATAGTATCAGATTTCTCCG 1998 30 100.0 35 .............................. AAACATATAAAAGCGGGGGAAACGATCTGTAATGG 1933 30 100.0 36 .............................. TTTTTCACCTCCTTGCATAGCCCTCTCACTATACGG 1867 30 100.0 36 .............................. TCACCAAATAAAATATAATCTTTGATGTTTCGTCTT 1801 30 100.0 36 .............................. AAAAGAGGTGGAAAGGTATGGTTAATGAACAGCTCT 1735 30 100.0 36 .............................. TAAACGTAGAAAATGTAAACGGCGTACTTTGTACAA 1669 30 100.0 35 .............................. ATCTATCAGGTCACTATCAAAGCTGAAATCTCTGT 1604 30 100.0 35 .............................. GCTCCATTTCTAATTTTTCCATAAGTTTATTGAAA 1539 30 100.0 36 .............................. AAACAGCTTGTAATCTTCTATTGTTTAGTTTGACAA 1473 30 100.0 36 .............................. TAAAATATTTTGGATTTCATTAATATTTTGTGGAAT 1407 30 100.0 35 .............................. AAAACTTACAGATTTAAAGAGTTTGATTTAGCATT 1342 30 100.0 35 .............................. AAGAACTCCCGCAGTTTGAATATTAAAACTGACAT 1277 30 100.0 36 .............................. AATTATATAGAGTATCAATTTTGTAAATCGTTTTTA 1211 30 100.0 36 .............................. TCTCAAGACATACGACGAAAGATATAATTACAACAT 1145 30 100.0 36 .............................. ATTTTTGCAGCTCCACAAATGAAATGTAAATGTTTT 1079 30 100.0 36 .............................. ACCATTTTGACAACAACATCAAAATGGTACAAACGT 1013 30 100.0 35 .............................. TTAATGTTTCTTGCTGTTGTATGTGAATTAGAAAA 948 30 100.0 36 .............................. TAAACCTCCATTTGGGACTTGCGGGTCTTAGTTTCA 882 30 100.0 35 .............................. TATATGCCTGAAACATGTGAAACATGAGGGAATAG 817 30 100.0 36 .............................. TTTCTTTGTCAACTTCATATCCCAGAAACACAGGGA 751 30 100.0 36 .............................. ATGTTGTTGTCAAAATGGTCGTTATTTAACCAAATA 685 30 100.0 36 .............................. ACTAAAAAAAATAGTCAAGGTAATTAAGTTTTTTGA 619 30 100.0 35 .............................. CCTCTTGTTCTCTAAAAACTTTAAATTCAACATCT 554 30 100.0 35 .............................. TTTCTTCAAAATTTATATCTTCTTTAGCTGTTAAA 489 30 100.0 35 .............................. GTAGAGTTGGGAGAAAGTTTTTTCCAACTAGATTT 424 30 100.0 35 .............................. CAACATATGCACCATTACAAATGTAATTAGCTTGC 359 30 100.0 35 .............................. AGGAGATCTTCATATCTCAGGCTCTGGATATGCGC 294 30 100.0 36 .............................. CTATGAGTCTGTAAGAGCTAAGAGGTCAAAAGAGGG 228 30 100.0 36 .............................. AATTTTATAAGAGCATGATTAGCCAGCTTCAAGACT 162 30 100.0 37 .............................. ATTAAGAGAGAGGCAACTATGAAGTCTAAGAAAGACA 95 30 100.0 36 .............................. CTATACATTGTACACAAAGGAAAATTGTGTATACTG 29 29 96.7 0 .............................- | ========== ====== ====== ====== ============================== ===================================== ================== 41 30 99.9 36 ATTTAAATACATCATATGTTTCTATTCAAT # Left flank : AACGTTCAAATATCTTATCATTAATTTGTAGATTTGAAATTAACCCTTTATTTTTTAATATTATATCCAGTACAATTTCTTTCAAATTTTTAAATTCCTGATGAAAGTCATCTAAATATTTATCTTTTATTTCATTATTTTCAATAAAACCCGTTTCTTTCTGAAATCCAAAATCTATATATTTTTTTCTTACTACTAAAATTTCATTTAACGTCTTCACCCCTAAATTTTTAAATTCTATCAGTTCTTTTTCAGAAATCTCCATAAGTTCCTGCATCGTATAAATCCCATTTTCTATCAAACAATTATACGCTCTTGTTGATAACCCTAATTTTTCAATTTTCATAAACTACCTCTTTTTATACCTTTTATTCTTTATCATTAACATATATATAGATAATAAAAATTGTTATGATACTACACAATTTCATATTTTAATATCTAAATTGTATATTTAAATATGTTTAAAGATTCTATCCTTATTATTTACCTACACACTT # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCATATGTTTCTATTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 47932-48289 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYW01000014.1 Leptotrichia sp. OH3620_COT-345 scaffold_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 47932 30 100.0 36 .............................. TGTTAAATGATTATGAAACTTTTATTTTTTCTATAG 47998 30 100.0 35 .............................. AACGAGATACTGAAAGAAACAAAAGAAAACAGTAA 48063 30 100.0 36 .............................. CTTTTAGATATAGGTGCAACTTCAAGAGGAGCATAT 48129 30 100.0 36 .............................. TATTCTTTTAATGTACTAGGAAGTATTGATATAGGA 48195 30 100.0 36 .............................. GTGTTTTAATTACAGCGTGGATAGCTTCCTCCCCTA 48261 29 83.3 0 ...............A....A.-G....G. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 97.2 36 ATTGAATAAGAACATGTGATGTATTTAAAT # Left flank : GTCAATGAATATAATTTTTTTGAACATAGCTTAGGTGAATGCAAAGAAGATGAACTATTTATTTAAATGAAAAAAGATTTACATATGTTTTTTAAATTGTTTATTGATTTGAAAAAATTATTATAAATAAAAGCCATATTTATTATTTAATATATTAATAAAAATAAAGGAACTAATTTTGAAAATTTTAAATAAAATGTAGTAATATTTTTTATGATAATAGTATTGTTTTTTAGCTTTTTTGACGAAATTAGGATATTATAATTTTTAAATTATATAATAATTAATTTTAACTCTAAAGATATGTTGATTAAAAATATGTTTAAAATAAAAAAACTGACTTGACGGTATATAAATTATATCCAAAAACTTATATTTAATAACATTATAAAATAAATTATTAAAAAAATATTGTCGGTTGGAAGAAAAAGATATACAATGATTGATATGATAGGTATGCTCTACTATGATAAATACTAAATATGATAGAATTAATCAGC # Right flank : TATTGTAAATTGAAAAATTCTTAAATTATAAAAAATTACAATATTATTGATTTTTTAGGTATATTTTAATATAAAGGGTTGTTTAAATATGTTTTCTATGTAATAATAGATATAAAAAATAATCAAAAAGAAAGGAAGAATTGAATAAATATATAATTTATTCTGATACAAAGTATGTTGAAAAAATTTTTAATATTATTTCTATTATTATCTTCGCTAAGTTTTACAGTTCAATATGAAATTGTAAAAAAATCAAATGTAAATTTAACAATATCTGGAATGAAATCTAATGCTGAAAAGATTGCAAATAAAGTAAAAAATGAAATAGAGAAAAGAAAATTAATAGAAAATATAAAAAAAGGATATAAATCTCGACTTTCAAAAAGTGACAGAAACGAAATTGAAGAAAAATTTTTAAATATAATGTTTACTTTTTATCTTCGAATATTTGAAAAGGAGCTAGAAAATACTAATATACAAATAGAAAAAATAAATTATAT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAATAAGAACATGTGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 52856-54527 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYW01000014.1 Leptotrichia sp. OH3620_COT-345 scaffold_13, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 52856 30 100.0 36 .............................. GAAAATGGGAAAATATATGCGTTAGGAAATTCAGGA 52922 30 100.0 36 .............................. ATTGCTTTTTCCATTGTTTTTTCTGCTATTTCTTCC 52988 30 100.0 36 .............................. TTTATTAATTCTTGCGTGTTTGCTTTTTCTCTGTTT 53054 30 100.0 38 .............................. ACTTCAATACTGTTTTTGTCGAATTCTTTTATAACAGC 53122 30 100.0 35 .............................. ATGGAAACGAAACAAAACAAGCTATCAAATATACA 53187 30 100.0 36 .............................. TTATAAATCTACTCTCTATTCTAGACCTTAGCTGAT 53253 30 100.0 36 .............................. ATATTAAAACCATAACTTTGGCTTGTATTCCTTCTA 53319 30 100.0 35 .............................. ATTTTTTCCTCAATAGTCATAACTTACTCCTTAAA 53384 30 100.0 35 .............................. GAAAAAGAAAACGTAATTGAAAATTTAGAAGGAAT 53449 30 100.0 35 .............................. AGAGAAGACACGGGATGTATATAGGAGATAATGAG 53514 30 100.0 35 .............................. TACTCCGGAGTATACTTATCATCTTCAGAATAATA 53579 30 100.0 36 .............................. TATTTTATAAGCTCCAATTCCGTCCTATCTGCATGC 53645 30 100.0 35 .............................. TAGTTAAAGACTTTCTTATATATCTCAGTACTCAT 53710 30 100.0 36 .............................. ATAACATGCTCCTTATTGGAGTATTGGTTTATTAAA 53776 30 100.0 36 .............................. TTGTGTAGCTCTTCTTGGGACATTTTTTGTCCCTTT 53842 30 100.0 36 .............................. ACTACAAGACTTTTTACCCCTTTTATTCCCGCTATA 53908 30 100.0 35 .............................. TACTCTTGTATCTTTTTAATGTCAATTTCTTCTTT 53973 30 100.0 37 .............................. TTCCGTAAAAATCCCCATATTCGTAGAAGTTTTTGTA 54040 30 100.0 36 .............................. TGGTCATATCTGGGAGTCATTATTGCCTCAGCTAGA 54106 30 100.0 35 .............................. TACTCCTACTTTATTGTTCAAAATTATATAATCTT 54171 30 100.0 35 .............................. TCTTTTGACATATCCTTAACAGTTTCCGGATTAAA 54236 30 100.0 35 .............................. TTCTGCCATTTTTGCTTATATATTGCATAGTTATG 54301 30 100.0 35 .............................. TTCTTTCACCCATTATTCTTCCTCAATTTCTATTT 54366 30 100.0 36 .............................. AAATTAACCATCCCTGAAGCATACCTTGAAATTCCA 54432 30 100.0 36 .............................. AGCATAAACATAGCTGGTATTCCAACAAGGGATTTT 54498 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 26 30 100.0 36 ATTGAATAAAAACATATGATGTATTTAAAT # Left flank : ATTTATTTGTTTATTATACTGCTTATTCTATTTTTTTGGTTGTTTTTATTAAAGTAGAAAAATATTACAAATTATATATTTTATTTTTTATAAAATTCAATAAAATTATTAGTAAAAAATGATTTTTGATTTTTTAGAGTACATACTACTTGTAATTCTGGAATTGTTTCTAATTTATGAGATGTTCTCAAAGATTAAAAGCAAAATAAATATGCTTTATTTTTGAAGAAAATAATACAAATTGAAGTAACTGTTATTTTTTAACTTTAAAATAATTATATAAATAGTTTAAATTTATGATAGTAACGAATATTAAAAGTTATTTATAAAATTCAATTCCCAACCTAAGAATATATAAATTATATGAAAAAACTGATTTTTAAGTATTATAAAGTAAATTATCAAAAAAATGTTGTCACTTGGGAAAAAAAGGTATATAATAAAAATATAATCTGAGATTTTTATTATGAGGAATATTAGATATTATAGAATAAATCGGC # Right flank : TTGTCATATTTTATAGGATGATATTACTATTAAAATATTAAAAGATATTATATTGTTAGAAAAAATTAAAAGCATTTTGTTTAACTTCTTCTTTTTTGACATAAGACTAATTTAATAAATGCTTAAGAAAAACATAAATTGAAATTCATAGTATTGCATTATATTAAAAAAAATGTTATTATTCTAAAATATATGTTAACGTAGGAATATATAAATAAAAATGTAGGATAGTAGGAGGAAACAATGAAAAAAGTATTATTATTACTGACATTAGTTACAGTATTTATTTTAAGTTGTAAGAAAGAAAAAAGCAGTGTAGAAGGGCAGAAGGAAAAGAAAAAAATAAAAATCGGAATTACACAAATAGTTACTCACCCAGCTTTAGATAGCGCAAGAAAAGGATTTAAAGATGCTATTGAAGAAGTAGGACTAGAAGTAGTGTATGATGAAAAAAACGCTAATGGAGAAATAACAACAGCAAATTTAATAGCAAACAATTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAATAAAAACATATGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 60554-58856 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYW01000014.1 Leptotrichia sp. OH3620_COT-345 scaffold_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================================================================== ================== 60553 30 86.7 36 GC........T.T................. TCTTGGAGCGGACGGAGGCGTGGAAGCTCTTAAAAT 60487 30 96.7 36 .............G................ ATTTCTATGTTTTCGGTGTCATTAATCCTATAACCT 60421 30 100.0 35 .............................. TGGGATAAATGGGCTTGGAGAATTACCAAGCAGAA 60356 30 100.0 35 .............................. AAAGTCCTCAGTTCTCCTGAAGCTATAGTAGAGTA 60291 30 100.0 36 .............................. TATTTCATTAGTCATAGCACTAACCGTCAATTTTCC 60225 30 100.0 36 .............................. TCCTAATTTTATATATTTGCATTTTTTATATTTTTA 60159 30 100.0 36 .............................. GGTTATAATCTATCCTATTCATACTCCTGATAGATA 60093 30 100.0 36 .............................. TTACCGAAACTATAAATAACCAAAGTTCTATACTGA 60027 30 100.0 36 .............................. TTGGAATACGTTACAGCGGAACACGTTACGGAACAG 59961 30 100.0 36 .............................. AGCAAGTGAGAAGAGTCAATTTAATAAGGGATCTCT 59895 30 100.0 36 .............................. AAGAGAAGACTTCATTATATGTAGGGAGAGGATAAG 59829 30 100.0 36 .............................. ATTAAATATTACTTTCTTATCAAAAGAAAATAAATA 59763 30 100.0 35 .............................. TATTTTTTGTTATTATTAATCGACTACCCCAATAT 59698 30 100.0 36 .............................. TTTTTTTATACATTTTAAAAAAAAGTGTTGACTTTT 59632 30 100.0 37 .............................. ATCTTGTAAAAGCTGTTGTATTAACACCTATTTTTTA 59565 30 100.0 36 .............................. AAGAGAAGACTTCATTATATGTAGGGAGAGGATAAG 59499 30 100.0 36 .............................. TTCTGCTTTCCCGAAATACTCAAATCTTGGCAATTG 59433 30 100.0 35 .............................. CTATTTGAAGAATTAGATACATATGTTACAGAAAG 59368 30 100.0 36 .............................. AAATATAAAATACATTTTACACAATGTGGACAATGT 59302 30 100.0 36 .............................. GTTAGATTCATTAGAACCTATAACTCAGATACTCAA 59236 30 100.0 35 .............................. CAAAAGGTGTAATCAATAAAAAAGAGGTTTAAAAA 59171 30 100.0 35 .............................. TTTGAAACAAAAAAAGAGCTACTTTATAAGCTCTT 59106 30 100.0 190 .............................. TCCGATCAAAACTTTCTGTTTCAATATAAACCATAATGAAGAAAGTTAATTTTTATTATAATTATACCTCTTTTTTTACCAAGTTACAACCTATTTTTATTATAATTATTTATAACATCCTTAAATATTTTACTTTTAAACACTTTATACACTACCGGGTTGGGAAAATTTATTAAAAATCATTATAAAT 58886 30 73.3 0 T...T.G.....A........T.T..G.T. | A [58867] ========== ====== ====== ====== ============================== ============================================================================================================================================================================================== ================== 24 30 98.2 43 ATTTAAATACATCATATGTTTCTATTCAAT # Left flank : AATAAATTTTACTTAAATAAACTAATATGATTAATAAAAAATATTTATTAAAATTCTAAAAAATACTTCTATTTACAGAGAGCATTGAAATTATCTTATAAGTCAAAAGAAAGCCCATAGCTATATGCCATATACTTTTATACTTTATGAAACAGCCTAATTTACAATTTTTGAAAATTAATTTAATCATTTCTATAATAAAAATTATTATTTAAATTACATTTCTATACAAAAAATTTGTATTTTTATCTTATCCTAAATTATTTCTTATATACTTTCCTAACTTCAACCTTTTATAATTATTTCTAAAAATATATTCATTTCTTCTTTTAATAGTTCTTTTTCCGTTTCTAATTTTCTTATTTTATTTTAAATTTTTAATAAATTTTTATATATAACTTCTTTCCTTAATTTTTTATTTTCTACTCTTTTAATTTTTCCTAAATATTTTTCTTCTATTTAATAATTATTTTCATTTTTATAAAATTCCATTATTAATT # Right flank : TTTAAAATTATTTTATAATCTTTAAAATAAAAAAGTGTAATATCAGCAATAAAACGACTTAAATATTCAAATCTTTTCTAAGACTCTCATAAAGCAATAAAAAATTCAGCAACTTCATAAAATAATGCAACTAAATTTTTCATAAAATTACTGAATTTTTTTATTTATACTAAAATATATCTCTGTCAGATAAATTCGCTTCTTTAGACTTAAACATTTCAAGCAGTTTTTCTACTGTCAGATTTTTTTTCTCTTTTCCCGTAATATCAAAAATTACTTCTCCTGCATGAAGCATTATCAATCTATTCCCATAGCTTATTGCATCTTGCATATTATGTGTAATCATTAAACTTGTTATATTATTTTTTTCAACAAGTTCTTTTGTTTTTTCAAGAATTATTTCCGATGTTTGTGGATCAAGAGCAGCAGTATGTTCATCAAGTAACAGTATTTCAGGACGATTTAATGTTGCCATTATCAAAGATAAACATTGTCTTTGT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.64, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCATATGTTTCTATTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-90.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //