Array 1 690609-689299 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGSH01000001.1 Escherichia coli strain MGH188 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 690608 29 100.0 32 ............................. ATTAACGGTCGCATCATCATATTGAAAAAATC 690547 29 100.0 32 ............................. TTATATAATGGCGCATTATTTTGGCGTATCTG 690486 29 100.0 32 ............................. CACATTTCGCAAGACGCATACGGAATCGCGGC 690425 29 100.0 32 ............................. GTGTACCTGCGCAAAAAATAAGCGGCGGCAAA 690364 29 100.0 32 ............................. CGTTTATTGCGGCTATTGAAGAAGAGCAGGAA 690303 29 100.0 32 ............................. GCTATCGGGTGTGGATACCGCTTTCGAGGCGT 690242 29 100.0 32 ............................. CCGAAAATACACCTAAATCAGCAGTTATCGCT 690181 29 100.0 32 ............................. GCGAAAGCCCAGCGGAGATTCATCACGTCCGC 690120 29 100.0 32 ............................. CGTTTATTGCGGCTATTGAAGAAGAGCAGGAA 690059 29 100.0 32 ............................. AAGTATTTCCGTGCACCGTGGGAGGCGTTTTG 689998 29 100.0 32 ............................. CGCGGGATACGCCGGTTATATCACTGGTAGTG 689937 29 100.0 32 ............................. TAGTTGTGCTGATTTTTGATGGATGGTTATAA 689876 29 100.0 32 ............................. GAACTTGCTTACCTTTGCTGTGCTCGTCAGAA 689815 29 100.0 32 ............................. GGCGTTGGTGGCTGGGGCCGCCCGGTTGTTGA 689754 29 100.0 32 ............................. AAATGGCATTCGCTGTTGGAATTATGGGGTAT 689693 29 100.0 32 ............................. AGCGATTTCAACGCGGCGACGGTGGACTTAAT 689632 29 100.0 32 ............................. CCAGTAGGCGATTTGCGGGGCGTTCATGTTTT 689571 29 100.0 32 ............................. AGTCAAAATTAGCAAAACTTGATTCAAATAAC 689510 29 100.0 32 ............................. TCCGGCGAGCTGGTCACCTGGCTGAATAAATT 689449 29 100.0 32 ............................. GAAACTGAAATCGCGGTTGATAACGCTGATAT 689388 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 689327 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCTGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGCGGTCACCGGGGGCACGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTTGAAGTGCGTGCCGGTGTTTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTGCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATACCGGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTGGTGGCGGCAATTCCATGGCTGCGGGCAATTGCCAGCGCCCGGTCGCGCGTTAATTTCCTTACTGCTTCAGGTGTTTTTACGCCACTGTTGAAATACAGCTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //