Array 1 123891-123328 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKID01000005.1 Streptococcus mitis strain UMB0079 .21837_8_83.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 123890 36 100.0 30 .................................... GACGGTAAAAGCGGAAGCCCTGACCCTGGG 123824 36 100.0 30 .................................... TTTATTCTCTGGAAACATAGGAAAAGCACT 123758 36 100.0 30 .................................... TTTGCTTTTTCATGGTCATAGCTGTAAAAG 123692 36 100.0 29 .................................... ACCTCTTGTTTTTGCTTTTCAATGTTCCG 123627 36 100.0 30 .................................... GCAGGGATATTTGTAAACTCATCTAAGATA 123561 36 100.0 30 .................................... CGGTAGAAAGTATTTCCATCACTTTCAACT 123495 36 100.0 30 .................................... TCAACTGCGATCTCCTGGAGTTCTAGCTCA 123429 36 100.0 30 .................................... AGGTTTTGCGTCTGGGTCTTTCTCCGTGTC 123363 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAACTCAATGACAAACCAGAAGTCAAATCCATGATTGAAAAGTTGGTAGCCACGATTACAGAATTATTGGCATTTGAGTGTTTAGAAAATGAACTAGACCTAGAATACGATGAAATCACCATTCTAGAGTTAATCGATGCGCTAGGAGTCAAAGTTGAAACTCTGAGTGACACACCTTTTGAAAAGATGCTAGAAATTGTCCAGGTTTTTAAATATCTTTCTAAAAAGAAACTCCTTGTTTTCATCAATGCATCCGCCTATCTATCAAAGGATGAGTTAGTAAATTTAATAGAGTATATCCAACTCAATCAACTGTCCGTCTTGTTTGTTGAGCCTCGGAAAATCTATGATTTTCCCCAGTATGTATTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTGATAATTGGAACCTGACGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : ACATTAAAAGCTACTCATTTTTTAAGTAGCTTTTTTCTTATTCAAGTTTACATATTAGTCATTACAATCCCATTCCCCTGTAGAAAAGCAAAACTGCGAGTCCTACGAACAAGACTAACGCTACCAGTCTTTGACTAGCGCTATACATCCGTCTTTCTCCTCTAACTGGAAAGATAACTGCTAGAAATGCGCCACCAACTGCACCTCCGATATGACCTGCTAGACTGATTCCTGGAATCAGAACACTTCCAATAATGTTAACCACAAAAAGTGTCAGATAGGATTGCCCCAACTGCTGGATATAAGGATTACGCGTTGCATAGCGAAGAACAATAATTGCAGCAAATAGCCCATAGAGAGAAGTCGAGGCTCCTGCTGCTAAGGATTTGGGACTAAATACAAAAACAAAGAGATTGCCCATCATTCCAGATAAGAGATAGAGAAAGAAAAACTTCTTGGATCCGAAAATTTCCTCTACTTGCCTACCAAGGTAATAAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 49193-49028 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKID01000009.1 Streptococcus mitis strain UMB0079 .21837_8_83.9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================== ================== 49192 35 100.0 30 ................................... TGAGTAACCCACCTTAATAGCGGATTGTGT 49127 35 100.0 30 ................................... CACATCCGTAATTGTTCTGGAAAAGTCTTA 49062 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================== ================== 3 35 100.0 30 GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Left flank : GAGAAACATCATGGCAATCTCAAAAGAGAAAAAAAATGAAATCATCGCACAATATGCACGTCACGAAGGTGATACAGGTTCAGTAGAGGTTCAAGTTGCTGTCCTTACTTGGGAAATCAACCACCTTAACGAACACATCAAACAACACAAAAAAGACCACGCTACTTACCGTGGATTGATGAAAAAAATCGGTCGCCGTCGTAACTTGCTTGCATACTTGCGTAAAAACGACGTTAACCGTTACCGTGAGTTGATCAACTCTCTAGGACTTCGTCGTTAATTCAAGATACAAAGGCCGTCAAAAGCACAAAGCAAAAATAGGAAAATTGACGAAGAAACTTTAGTTTTTAGGAAATTTTATCTTTTTTGCCAAGTGCTTAGGCCGTGTTCAATTGAGCATATCTTGATAATGAAGCTACTCTAAAATGGGTAGCTTTTTTGTATGGATTTTAGCCCGGGCTCAAATCAGCTCTCTGACTTCAGAGGGCTTTTTTATTGAG # Right flank : CTCAAATGGTATCAGCTAATTACACCATAAGGGTGCGTAGCTACTCGGCTTGAAAAGCCGAGTAGCTGTCTGCAAGCCCCTTCGGAGAGCCCACACTTTACGAAGTAAAGTATAGTATGTTATACTTTACATGGAAGTAGTCACCGAATTCCAGTTAGAAATTACTTTGTAACTACGTTTTGAGGAGGAGTAAAATGCTTTCCTATGTTCGACATTACCCACTAGCGATAGCTAAATTAATGTGTCTGTGCTCTCCTAAAATCTGCTGATTTATTACTGACTAATACAGGAGGTTTTTATGGGACAGACAATCATATCTGCTATTGGTGTTTATATTTCCACCAGTATCGATTATTTAATTATTTTATTTATTTTATTTGCACAGCTATCACAGAATAAACAAAAATGGCATATTTATGCGGGGCAATATCTAGGCACAGGCTTACTTGTAGGGGCGAGTTTAGTTGCTGCTTATGTCGTTAATTTCGTGCCTGAAGAAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //