Array 1 256428-254446 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUJI01000002.1 Salmonella enterica subsp. enterica serovar Kentucky strain 161365 contig02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 256427 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 256366 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 256305 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 256244 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 256183 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 256122 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 256061 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 256000 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 255939 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 255878 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 255817 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 255756 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 255695 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 255634 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 255573 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 255512 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 255451 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 255390 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 255329 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 255268 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 255207 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 255146 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 255085 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 255024 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 254963 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 254902 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 254841 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 254780 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 254719 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 254658 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 254597 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 254536 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 254475 29 100.0 0 ............................. | A [254448] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 276163-274060 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUJI01000002.1 Salmonella enterica subsp. enterica serovar Kentucky strain 161365 contig02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 276162 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 276101 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 276040 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 275979 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 275917 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 275856 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 275795 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 275734 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 275673 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 275612 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 275551 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 275490 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 275429 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 275368 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 275307 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 275246 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 275185 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 275124 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 275063 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 275002 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 274941 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 274880 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 274819 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 274758 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 274697 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 274636 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 274575 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 274514 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 274453 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 274392 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 274331 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 274270 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 274209 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 274148 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 274087 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //