Array 1 95522-95733 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCXO01000009.1 Mycobacterium koreense strain KCTC 19819 NODE_9_length_100121_cov_138.917, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95522 29 100.0 32 ............................. AAATTCGTGGCAGGGCTGCGCCCCGTGACATT 95583 29 100.0 32 ............................. CCCGGTGCCGCACCGCTGCACGCGAGGCACCT 95644 29 100.0 32 ............................. CCGCACCGTCGACATGCCGTGCGGCCCGGCTA 95705 29 79.3 0 ...........T..C....A...TC...G | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 CTCCTCCCCGCGCAAGCGGGGGTGTTCCC # Left flank : GGCGCACCAGGATGTCGGGGGTGAAAAACCGCTTCTTGCCGTCACTGTCGCGGCCCATGCACATCAGCGTGCCCTGCGGGTAGGTGCGGTATCCGGCGCGTTCGATCACGTCGCGCACTCGCTTCTCGGTCTTGCTGGTGGCTGCTGACCCGCCGAGCGACAGGTCGCCGGGGCGCGCGGACTTGCGGTTCATCTGCGGCAGCAGCGGCGGAGTTCTGCGCTGAGTCCACCACACCCAGGTCCAGACGACCAGCAGCGCCGACGGAACAGCCGGGTGCAGCAGGAACTCCGTCATGACGGCCACCGTAGGGAGAAACCGCTGGTGGGCCGGTCTCGGGCGCGGACGCAAGCATCTGTCACGTCCTTTGCGCCCGTGACGGTTTCGGCGTGTCGCGCCGGGTGGGGTCGCGGTGGCGGGTTACGCGGTTACGGTGGGGGCAGCACGATCACAACTGAATAGAAACGGGCGTTGTCACGGGTATCGGTGCAGGTCAAGAAGT # Right flank : GACGAAATACTCGGCGTGTAACCGGATGCCCGCTGCAGCAACCGCGGCCGCTGCTGTCACGTCGCATGTGGCGCGCCGCGGGGGCACAGTCGCGTCTCGGGATGGTGCACTGGTAGCCATGCGCGCACTCGAAGACGTCACCTACGCCGACATCGACTGGGGCCGAACCCCTACCACGCACCACGGCGTCACCCTGAGCGGTGTGCGTCGCATCGCGCAGATTGCCGGGGTCTCGTGGCCTCACGAGCCAGAGACCTGCGGCGCGGGGCCTCTGGAGACGGTGTGGGTGTGCGGCGGGCAGGTTCTGCTGTGCCGCGGCTGTGGGCTGGACGCCACCTGACGGGCGGCGGCTACCGGTAGACGGCGCGCACGATCCCGTCGGCGTCGACCTCGTAGGCGCGGGCGCGAGTCAGGCGGCCATCCACCCAACCACGATGCGCGACACCGTGGCCGGTCCGCGGCCGAGGCGGTCGTTGGTCTCGTGGACGTAGTGCCGCCCC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCAAGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.00,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37972-38490 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCXO01000008.1 Mycobacterium koreense strain KCTC 19819 NODE_8_length_114531_cov_149.849, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 37972 29 96.6 32 ............................T GAGATCGCCCACGGCATCGACCGTGCCCACGT 38033 29 96.6 32 ............................C GCCGAGGCGACCGACACCGGTGACGTACCGCC 38094 29 100.0 32 ............................. GAGCGTTGCCCCCACACAGCGAGGAGCTGAAG 38155 29 100.0 32 ............................. CGCCCGCACACCATCGTGGCTGGCTCATCCGG 38216 29 100.0 33 ............................. TCGAAGACCTGCTGCTCCAGCTCCAACGCATAC 38278 29 96.6 32 ............................A CGCAAGGCGGCGTGCGAGTTCGGGGAGCTGGA 38339 29 93.1 32 ............T...............C GGTGAGCCCTACATCGAGCAGATTCGTGACGC 38400 29 93.1 33 ..........................T.C GGCGGGAGCGCCCACATGCTGCCGTCCGGCAGC 38462 29 86.2 0 T..........T..C...........T.. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.8 32 CTCCTCCCCGCGCAAGCGGGGGTGTTCCG # Left flank : GCCGAGTGGGAGTGGGCCGGATCGGTGATGGAACACAGCCGCCGCATCCAGGCCCGGCTGGACGCCTCGGTGAGCACGCTCAAGGCACGCTGGGCACGCGAGGACGGCCGCCTCGACCATGTTCGGCGCACCGCACAGTCCACCGCGGCGGCGGCGGCGTGGGAGAAGACCCTGGCCAGTCTGGCGCGGTGGGCCGCGGACCCGAAGAAGGGGCCGGAGCACAAAAAGGCATCCGGCCGATTCACGGTCTCCGATGTGATGCGCAGCGCGAAAAGCGGCGAGTCACGGCGCATCAACGCGGCCAAGTTGTGTTCCGAGCTGGTCGAGGGCGGCGTCTGGGGCAGTGACGGCACCCATTTCTGGGTACGCGACAGTTGACGCTTCGGCGTGTCGTGGCGGCCGGGGCCGCGGTGACGGGTTACGCGGTTACGGTGGGGGCAGCACGATCACAACTGAATAGAAACGGGCGTTGTCACGGGTAACGGTGCAGGTCAAGAAGT # Right flank : GGGTGGCGGTCGCGCGACTAGCGACCGCCACCCCATCGAGGTGCGCACGTGGTGTTACGCGCGCCCATCTTCCTGTCCCGCGCACTTGTCACGTCCTGCGCTTCGGCAGCGACGCGGGCCGCCTCAATGGCCCAATCCGGCGCACACCGCGGTGTGACGATGCTGCGGAGCCCAGGCATCTTCGCAGGTCAGTGCGCCCTCGCCTGTGGCCTCCGATCGGTAAATGTCACGTCCCTGAGTCCTGGAATCGGCACTATTCTGGCCGCAATCTGACGGATTCTGATGTATTACGCTGCAATCTGCATGTGCTACGTTGCGGAAACGAACGTGCATAATGCCGGTTTCGCTCGTCAGGAGGTGCTCACATGCCGGACACGGCAACTGCCGAAGGTGTCGTCCTCATCGACCCCAACGCGCTGTACCGGCCGGGATCGGTGCCGATCATCGGTGCCGACCGGCTGGCTCAGATGCGCAAAGTCGGCACCGGGCCGCGGTATCTG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCAAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82215-82609 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCXO01000008.1 Mycobacterium koreense strain KCTC 19819 NODE_8_length_114531_cov_149.849, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 82215 28 96.4 33 ...........................T GCGAACCCGCACCCCTTCGGGGGTCATGGCGAC 82276 28 96.4 33 ...........................C AGCAGCCCGCCCGACGCGCTGCGGCTGGACACC 82337 28 96.4 33 ...........................C AAGCACTTGATCGCTCGCCACGCTGACAAAGTC 82398 28 100.0 33 ............................ CGCGAGGGCCAGCACCCGCTCAAAGTGGAAGCC 82459 28 100.0 34 ............................ TACGCCCCGGCCAATCCAACCCAACCGATCGGCC 82521 28 100.0 33 ............................ CAGCACGACGTCGAGGTAGATGCCATTCAGGTC 82582 28 96.4 0 ...........................A | ========== ====== ====== ====== ============================ ================================== ================== 7 28 97.9 33 TCCTCCCCGCGTAAGCGGGGGTGTTCCG # Left flank : TCCGGAGGTGTCGGCCGCTAAAGAGTGCACGCCGCACTGGAGATGGTCCGACGCTGCGGGCGATACCTGGAAGTTCACCCGTTGCGCTGAACTGATCACTGTGGTCCGAGACGGCGGCCCGTTGGGGGCGTGCACCCTGACGTACCCGCCCGGCAGCAGGTGGAGCGGCCCAGACGATCTCTGCCGGTATCCAGGGCCGCGGTGACCCGGACGCGCCTCGACCCCGCGGCGGGGCCCCGCGGTGGCAACGTGCATGTGCATGAGCATCTACGACGATGAGGGTGACGTCTTCGACGAGCCCGACTACGAGGCCATCGCCGAGGCGCGGGCTGAGGCTCGGGCTGAGCGCATGGCCGAGATCGCCGAGGCGCAATACGAGCGCTCCATCTACGGCGACTGACGCCCAGCTGCTTGACATGTCGCGGTTATAGAGACAGTATGGGTGTCACAACTGAATGAAAACAGCTCCGGTCGCGTGTAACGGTGCAGGTCAAGAAGTC # Right flank : ACCGCCAAGCACGGCGGCCCCGGCACCGGTCCGTGTTCCCGACGCACGTTACGTGTACGTCACCTTCGCCACGCCTGCAACCGTTTTCGTCCCGAAAACCCGTCCCGAAAACAGTCGGTCAGGTCTGGGCGAGTTTCTCTCGGCGTGTCGCGCCCGGATGTAGTTGCCGGGTGCATAGTGCATGTAATGTCCGAGTCGTGATTGTCGCCAAAACAGAGACACGTGTAGATGCGGTGCACGCCGACGGCGCTACGGCGCTGAGCTACCGCCTCCCCGCCGACCGGGCGCTGCTGCGCGCCGCCGCCCATGACCGCGACCTGGGCCACCGCTTCGTGGCCAGCAGGTTCCCCGACGATCTCGGCGGTCCGCCGCTGGAGCTGTGGCGCATCGGCGACGGTGAGTTCACCGTGGTCTCCACCGTCGCCCCCACCGGATTCGTCGGCACCCCGCTGCCCACCGTGGGCCTCGGCGAGCGGCTGAGCATCGCGGTCACGCTGGAG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCCCCGCGTAAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 112656-112870 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCXO01000008.1 Mycobacterium koreense strain KCTC 19819 NODE_8_length_114531_cov_149.849, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 112656 29 93.1 33 ...........C................T GTCTACTCCAGCGCGATCCCCGGCCGCATCGCC 112718 29 96.6 33 ............................A GGGGCGGGCTGTTCCTGATAGTTGCCCCCACAT 112780 29 100.0 32 ............................. GGCCAGGCCGCGAGCTGGTTCCCCGACCGCGC 112841 29 93.1 0 ...........T..C.............. | A [112867] ========== ====== ====== ====== ============================= ================================= ================== 4 29 95.7 33 CTCCTCCCCGCGCAAGCGGGGGTGTTCCG # Left flank : CAACGAAGCGGGGCCGGGAAGCCACGACCAGACTGGTTGATTCATATTTAGATCATAGGTCGCTTTTCGGCGAAATGCCACATATTTAGATCACCGAGCTAGTCGGGCCAGGTGTGTCGCCGTGTCGGCCTCCGGAAAGGCTCACCGTCTCAGCAGGTCAGGAATCGTCGTAGATTTTTGCCTTCCAGCCCGGATCGTTCGACGAGCACCACAGCTCCACCCGCATCCCGTGAGCTTCGGGAGCCAGACGGCTGAGCGTATCGGCGGTCTCCTCGCACAAATCGCGGATGCGGACTCGGGTGTCGTGGTCGAGGGACATGGTGGGCAGGATACGAAGCCGCGCCGGGGCAGCGGCCGCGCGGCGCGGACGCGAGATGCGTCTCGGCGTGTCGCGGCGGCCACGGCCGCGGTGACGGGTTACGCAGCTACGGTGGGGGTCAGCACGATCACAACTGAATGAAAACGAGCGTTGTCACGGGTAACGGTGCAGGTCAAGAAGT # Right flank : GCCACCGCGCCGCACGGCTGCGCGGTGCGTCTTCGCGGTTACGTTGCAGCGGACAACGACAGTGGAAGGGAACAGCGATGGCGGTGTGGACGGTCGTCGGGGCCTACAGCGGAGGCGAGCTGATGCTGTTCGGCGCGATCGAGGGCAAGCACCAGGTCGGCGGCGACTTGGGCTATCACGGCTACCAGCCATTCGCTGACCACGTCGATGCCGGAAGCGCCCAGGAGGCGCTGGAGAAGGCCGCGCAGTAACGGTCAGTCGTCGTAGCGGTCGTCGTCGTCGTAGTGGCGGTCGAACCGGGACTCGAATGCCGACTGCTCGTCGAGGGCCTGCTCGGTGAGCATCTGCGCGTGGGTCATCAGCGGTTCGCCTTCTTCGTTGAAGTAGCTGCTGCCGCCGCGGTCGCTGGGCATCGCACCGTCTCCTGTTCCGCTCAATCGCCTGCGTGCTGCATCTCGTAGCCGTCGAGGTCGGAGATGTCGTCGTCGTAGTTCGACGGG # Questionable array : NO Score: 3.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCAAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24995-24722 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCXO01000048.1 Mycobacterium koreense strain KCTC 19819 NODE_48_length_26581_cov_141.24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24994 29 96.6 32 ............................A CCCCCGCTGCACCGAAGCTGCCCACGATGCCG 24933 29 96.6 32 ............................T CAACGATGGGGCCAAAGGGCAGCGCGTCGATA 24872 29 100.0 32 ............................. CCCGCAGCTGCGCCACGTCAGAGCTGGGGCGA 24811 29 100.0 32 ............................. TTGGTCCGGCAGAACGCCGAGGCGGCAGCTTT 24750 29 93.1 0 ............T.............T.. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 CTCCTCCCCGCGCAAGCGGGGGTGTTCCG # Left flank : GTCCACGCCGGGCCGAAGTTTGAGCGCACGTAAGTGTCCATGCTGCCCTTGGCCGCCACAGTCAACGTCGAAGGGTCGTCGCTGGGAGAGCCGGTGCCGCTGTCGACGGCCCCGCGGCTTCCCGGCACCCCGATGCTGGCGGCGACCTGCCCCCACGAGTCGCGCACCTTCGCCACCAGCCCCGAGTCGGTGCCGCCGTTGAGTAGCGCCAGCACCAGCCCCACCGCGGCCAGCATCACCAGCGGCATCAGCAGCGAGCCGAGCGTGGATTTGCCTGTCTTCTTCGCACCCATGGCGGCGAGGATGGTCGAGCTGGTGGCGCGCGACGGTGCGCGGCGCGTCACGGTGCGGGCACGGGAAGCGGCGGTGCCGTCGGAAGTTTCGGCGTGTCGCGTCGGCTGGGGCCGTAGTGACGGGTTACGCGGTTACGGTGGGGGACAGCGCGATCACAACTGAATAGAAACGGGCGTTGTCACGGGCAACGGTGCAGGTCAAGAAGT # Right flank : GTGCACTGCTGCATCGGCAACTGCGGCCTTGACATGCGATCCACCGTCTCCGACCCATGAAAGGCAGGCCCCATGCGACGCAACCCCATCGGCTACGCCACGGCGTGCATCCGCTACGTCCACCTCCCGAAGGCGCGGGCGGCGCTGCGGTGTCGCCGCCCTTCTGTCGCGCACCGCGTCGCGTCGGCCGTCGACTGGGAAGGGAAGGTGGTCGGGCCGCTCGGGGTTCTCGTGGGGGGCCGCTCGGGGCCGATAAGTGACGCGCTGCTGGCCGCGTGGCAGTGCGGGGACCACGCCACGGTGCGCCACATCCTCAACGCTGCGGCCAGCTGCTACCGGCACGACCCGGACGGCGGGCTGGGCGCGGTGTCTCCGGTGTCGGAGATGGACGCGATGTGGGTGCGCCGCATCATGTACCGCGAGCGCGGCGGGCGGGCGCTGGCCTTCCAGGCGATGTGGTGGATGGCTCTGGACGATCAGGCCCGGCGGGCGTCCTAACG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCAAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26369-25973 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCXO01000048.1 Mycobacterium koreense strain KCTC 19819 NODE_48_length_26581_cov_141.24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26368 29 100.0 32 ............................. TCGTGACCGCGAATCTCCTCGATCTCGTCACG 26307 29 100.0 32 ............................. ATCGGCCACGCCGCCCTCCTGCGCGGCCGCAG 26246 29 93.1 33 ...........G..A.............. GTCGCCGCCCCGTCGCGGATGTAAGCGCACTCA 26184 29 100.0 32 ............................. ACGCGGCCGTCGACCGTGGCCACCGCAGCGCT 26123 29 100.0 32 ............................. ACGCGGCCGTCGACCGTGGCCACCGCAGCGCT 26062 29 100.0 32 ............................. ACGCGGCCGTCGACCGTGGCCACCGCAGCGCT 26001 29 89.7 0 ..........................ATG | ========== ====== ====== ====== ============================= ================================= ================== 7 29 97.5 32 CTCCTCCCCGCTCACGCGGGGGTGTTCCC # Left flank : CGGGTGGGGCGCGCGGGTGCGGACGCGCCAAAGGCCGGCGAGGACGTGACAACGCCGCCGTATCAGTGCAGGTGGGAGGGGGTGTGAAACCGGTCTCGGCGTGTCGCGGCGGCTGGGGCCATAGTGACGGGTCACGCGGTTACGGTGGGGACAGCACGTTGACAACTGAATGAAAACGGCCACGGTCGCCCGTAACGGTGCAGGTCAAGAAG # Right flank : GGCAGCGCTTCGTCAGCACTTCCCGTAGTAGTGCATCATCACCGACTTCTCGGTCGCGGTGACCGTGAGGCCGTATTTGTTCTTCACCCGCACCTGCGACTTGACGTAGGTGCAGCGAAACGCTGCGTTGGGCGGCAGCCACTCATCGGCCGCGCGGGCACCCTTGCCCATGTTGGCCGGTCCGTCCGAGGCGATGAGGTTCAGCGGGTCGTTGGCGATCATCACCAGCCGCGACTTCGGCCACGAGTCCGCCCCCGACACCCAGGCGTTGCCCAGGGCCACGATGTGGTCGATCTGCACCGCCGAGGACGTGTCCGTGCCGCGCACGAACGCGATCACCTTCCCGGTGTACGCATCGGCGAGCGTGCCCGACAGCACCTTGCAGCCGTCCGGGGCGTAGACGTCCACCAGGTCGCGGGCCAGGATGTCGTTGCGAGTGTCGCAGCCGTTGTGACCGCCTTCGACATTGACGTTGTCGGTCCACGCCGGGCCGAAGTTTG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCTCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.10,-12.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //