Array 1 6468-5377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXQ010000003.1 Listeria innocua strain FSL L7-0312 NODE_3_length_477333_cov_124.706740, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6467 36 100.0 30 .................................... TATTGATATTATGAATTTATCAACACACTA 6401 36 100.0 30 .................................... GCTCGCGAGGGAGAAGTAGCGGGGCTGGAG 6335 36 100.0 30 .................................... GATAGTTGCTGCAATTGCTATATTAGTCGT 6269 36 100.0 30 .................................... TGTTCTCGCTATTCTACCGTCATTATCTTC 6203 36 100.0 30 .................................... ATATTACTGGTAAAAAAATACCTAACGATT 6137 36 100.0 30 .................................... TGCATATGAATTAAATTATCATGACGAAGA 6071 36 100.0 30 .................................... ATTCAGCAAATGTAATTTTCAAGTTATTCA 6005 36 100.0 30 .................................... GTGATTACTGCACCTATGCAGTATGTTAAC 5939 36 100.0 30 .................................... GTTTCTCATCAGATTTCTATATGAAGGATT 5873 36 100.0 30 .................................... TTTAGTTAGTATCACTTGCCTACTCCGTTC 5807 36 100.0 30 .................................... TGAAATACTAGACGCTGGTAAAGACCTTGT 5741 36 100.0 30 .................................... AGAATCTGAGTTCAGTATAATTGTAGAGGT 5675 36 100.0 30 .................................... TAATTGTCGCAAAAGAGAACGAAGCCGAAT 5609 36 100.0 30 .................................... TCACACGTTGTAAAGTTTTACCTAACAAGT 5543 36 97.2 30 .............................G...... AGATATGCGTGATGAATTGGTTACGCAAGT 5477 36 97.2 30 ............A....................... AAAATAGAAAATATTTGTAATAGTGGTGTA 5411 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 98.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTCATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAATTTTATTTGTTGAACCTCGAAAAGCAGAAGGGTTTTCGCAGGTTATCCTAGATTCAGATTATTTTTTACAAGTTGAAAAAGGAATGTAGAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG # Right flank : CATCTCTCAATCCACTCCAGCTAGAAAAAGTTACACCATTATGAAAGAGAGGCCCCAACAAATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTAAAAACTACGACACACGAAAATAAGACATATTTTATATATCAAAACGACTTAGACTTCCTGAGTTTGAACTTTGAAGAAAACGTTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAACATTTTAACCCAACCTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTACATTAAAAAAGCTAGTAAAGAAAGTGATACCCTTGAACTATACACTTCATGGAACGGCGAAGAAAATTTCCCTCTGACGAATAAAACAGAATTAGTTATAGAAAATTTAACCCCAGAAAATTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 10893-10734 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXQ010000004.1 Listeria innocua strain FSL L7-0312 NODE_4_length_309366_cov_118.583842, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 10892 29 100.0 36 ............................. GACACATTCTTGCGAAACGAGTGTTTTTTAGAGTCA 10827 29 100.0 36 ............................. AACTGATATGCGTTATCTACTGTTTGTGTTTTTAAG 10762 29 86.2 0 ..............A...........GGA | ========== ====== ====== ====== ============================= ==================================== ================== 3 29 95.4 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGTGTACGTGCCACAACCTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACGATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAGATATAAGCAGAAAACAGCAACTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCAACGTTAAGTAGCGTGAAAAACACCGGAGACCGACAGAAATTTGTGAATGCTTGGAGGAAGCGGAGTTTGGAGATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTTATCTGATTTGGAACAAGTCGACAGAAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGCGCACGG # Right flank : AGCGGCTTTAAAGAAATTACTAAATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTACTCGCAGTTTTATTATATGGGTGTTCATCACAAAACGAAGGAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCCAACAGTGATTCGATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCTGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCAAAAAAGTAAATATTTCGGAACCGTGGTATTTAAGTGATGATAAATATGTCGCGGTTGAAAACTATATTGCGCTTGAAAAAAATGAAGAATATACCTTGTTTCTAAACGAGGGCGACGATAAAGTAAGTTCTATAGTCAGCATGGGTTATGGTAAATTCAGTGAAAAGCTCCAAGAAAAGCAAA # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //