Array 1 4288347-4287891 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016162.1 Pseudomonas alcaliphila JAB1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4288346 29 100.0 32 ............................. ACCCGGAAACGCGCTACCTGCCGAACGGTAAC 4288285 29 100.0 32 ............................. TCGCACAGGTGCCGACGCTGGTTGACCAGGTC 4288224 29 100.0 32 ............................. CTGGCTCTAAATCTCGATTACTCGCTACCGGT 4288163 29 100.0 32 ............................. CCCCGAAATAGAGCCTTCATGTAGGGATGATA 4288102 29 100.0 32 ............................. CCGGCCTCGATCAGGGTGTCCATGTAACGGGT 4288041 29 96.6 32 .........................G... AAGTTGGCCAGATCGCATTTCAGGTAGTGCGC 4287980 29 96.6 32 ................T............ CAGGAGATGGCGCTGGAGTACATCGCTGCCTG 4287919 29 79.3 0 ...........TTT...........G.TT | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : AGGAAACCATCATGCCGCGCTTGTACCGCGAGGCGCCGGTCAACTCGATCTGGGAGGGCTCGGGCAACGTGCAGTGCCTGGACGTGCTGCGCGCGCTGTCCAAGGAACCCGGCGTGCTCGACGCGCTGTTCGCCGAGCTGGGCTACGGCCACGGCGATGCGCGGCTGCGGGCGCATATCCAGCGGCTGAAGGCCGATTTAAGCGACACCGCCGACATCCAATACCGCGCGCGCCAGCTCACCGAAGACATGGCCGTGGCACTGCAGGCCAAGCTGCTGCTTGAGGCGGGCAACAGCGTGGTCAGCGATGCCTTTATCGCCAGCCGCCTGGAAGGCCGCGGCCGCGTCTACGGCACCCTGCCGCGCGGTGTCGACGTCGAGGCGCTGCTGGCGCGTAGCACGCCGAATCTGCTTTGATACAGGGGCGATCTTTAACAAGGAGAAGTTGGTAGATTTTTAGCGGCTGATTTTCTCCTTTGAGAACAATTGGTTAGGCTAAGT # Right flank : CGAGGGGGTACCCGGCACGCTGTTTTTTAGCCGGGCAGGCGAGTAATCTTGCCGCCGATGGTTCTGCGTGCACGTCTGTGACGCGGATGAAAAGGGAACAGGGTGCGGCGAATCTCGCCAATGCCCTGGCTGCCCCCGCAACTGTAAGCGGCGAACGATGCCCTCATGCCACTGACTTCGGTCGGGAAGGCGGGCGAAGTGCCAAGCCGTGAGCCAGGAGACCTGCCATCGACAACGGGCGTTTCGCCCACCCCCTTATCCGAATCGTCGCGCGGTGGGCGCGGCAAAGGAACTCGCATGCATATCGAACCCGGTGTCGTCGAAGGCGCCAAGATCCTGCTCAGCTACGCAACGGCCGTCACCGCTTTCGGCCTGACCGCCAAACTCGCCCTGGACAGCGTACGCAACAACGGCGGTGTCGCCGCCCTGGCGCTACGCAGCCTGCTGACCACCGTCCTGGTGTTCTGCTTCTTCGAAGTGTTCCCGCATCATGCGGTGGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5187599-5188407 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016162.1 Pseudomonas alcaliphila JAB1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5187599 28 100.0 32 ............................ AGGCCGCGGCACCGCAGAGCAGCGAGGCTATG 5187659 28 100.0 32 ............................ CAGGTGCTGGACTGCATACGAACGCAAGAGGC 5187719 28 100.0 32 ............................ TTGCCGTCGACCACCGTCACACCCGCCAGCCC 5187779 28 100.0 32 ............................ AGGTAGGCGCGGGCGGTGGCGTTGGGCTGCTG 5187839 28 100.0 32 ............................ GTGGAAAAACGGACGAATCGGCACACCGCCGA 5187899 28 100.0 32 ............................ AGACGCCGCCGGTGTCCTGATAGGCCGTCAGC 5187959 28 100.0 32 ............................ AGGTACACGTCACGGCTGCGCGGCACGTAACC 5188019 28 100.0 32 ............................ ATGAAAGAGCATGGGAAGTGGGGGTTTCGTTA 5188079 28 100.0 32 ............................ TACGCGCCGCGCTGGAGTTACGGCCCGTGGAC 5188139 28 100.0 32 ............................ TGGAACACTTCCATGAAAGTGCGCTCGATGGT 5188199 28 96.4 32 ..........................A. TCCACAGGGTCGGTGAAGCTGTTGCCATCCCT 5188259 28 96.4 32 ..........................A. TCGGTGACGGCGTCCTGGATTCGCTGCAGGGC 5188319 28 96.4 32 ..........................A. AAGGGCGACGTGCCAACCATCGGCCACGGCTC 5188379 28 85.7 0 .....................C..C.CT | C [5188399] ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.2 32 CTTCACTGCCGAGTAGGCAGCTCAGAGA # Left flank : CCCCCAGCCCGGCCATCAGCAAATGGGTTAGCCAGTAGCTGGCGACGTAACGCAGCCAGAACGTGGCATCGGTGGCGACATCGCTCATCAGCCACCCGATCAGCGTGACCGCGATGCTGACCACGCTCATCAGCAGCGCCACGCCCACCAGATGCAGCGGCAACACCGGCAGTTGCCTTGCGGCCAATGTCGGCGCGAGCGGTTCCGGGGCGAAGGGATTGGGCTCGGTCATGGGGCGATCCTTGTCGTCGATACAGTCCGTTGGGAGGTAGTCGGAGAATAACGACCTCGTTGACGCAGGAAAGTGCGAAAGCCCGTTTGCGTGCCGCAGTCGATGCAAGGGAGAGGATTTATCCACCTTCATCAACACCCCTTTTTTCTCGCCGCAACTCTCACATCTTTAAAATCAGACACTTAACTAACGACCAGAAAAAAGGGTAGAAACGCCTCCAGCCGGGCTTTGATTTTGATAAACAACCACTTGCCCGCTATCTTCCCTA # Right flank : TTGGCACCCACAAGCAAAAGGGCTTAACTGCCAGCATTGTTTCAGGAGCCCCTCATGGACGACATCAGCCCCTCCGACCTCAAGACCATCCTCCATTCCAAACGCGCCAACCTCTACTACCTGCAGCACTGCCGGGTGCTGGTCAACGGTGGGCGGGTGGAGTACGTCACCGATGCCGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAACACCACCACTATCCTCCTCGGCACCGGTACCTCGATCACCCAGGCGGCGATGCGCGAGCTGGCCAAGGCCGGTGTGCTGGTGGGCTTCTGTGGCGGTGGCGGCACACCGCTGTTTTCCGCCAACGAGATGGACGTGGAGGTCGCCTGGTTCTCGCCGCAGAGCGAGTACCGCCCCACCGAGTACCTGCAGAAGTGGGTAGGGTTCTGGTTCGATGACGGCAAGCGCCTGGAGGCGGCCAAAGCCTTTCAACTGGCGCGCCTGCAACGTATCCGCCAGGGCTGGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTCAGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 5199361-5200530 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016162.1 Pseudomonas alcaliphila JAB1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5199361 28 100.0 32 ............................ ATACCGCGGCCCGCGTGAAGCCGCCGAAAAGC 5199421 28 100.0 32 ............................ AGATCAGGCGGGAATCGACCGCATCATGGTTA 5199481 28 100.0 32 ............................ GTCGACGTGTGCCCCATCTGGTCTGCAATCCA 5199541 28 100.0 32 ............................ TCGATACAGTTGCCGCCCGGCATGTAGTGGCC 5199601 28 100.0 32 ............................ ATCGCCAACCTCATCGACCCCTGGCACCGCAA 5199661 28 100.0 32 ............................ CGACGATGAGCCATGACCCCGAGGTGTATATC 5199721 28 100.0 33 ............................ AAGCGCAAAACCCAATTTTCCCCCGTCAACTTA 5199782 28 100.0 32 ............................ ACCATGTCGGGCAGCGAGGCCGCGACGAAGTA 5199842 28 100.0 32 ............................ GCGTCCATGGTCTTGACCACGACTTTCGGCAG 5199902 28 100.0 32 ............................ ATTTCCGACTACCCGGAGAAGGTGACCGACTT 5199962 28 100.0 32 ............................ ACGCTGCCGCCATACAGCAACTCAAACTCAGT 5200022 28 100.0 32 ............................ ATGGCATGCAGCGCCTGCAGCGCCGGCTTGAG 5200082 28 100.0 32 ............................ AGGTTTCCCGCACAGCATTCAGTGGCCAGTGC 5200142 28 100.0 32 ............................ GGTGTGCCGCAGCAAACCTACACCCCGCTTGG 5200202 28 100.0 32 ............................ TCGACGAACGGGTGAACGTGGTGGAGGTAGAC 5200262 28 100.0 32 ............................ AAGCGGGGTAATGCTCACACCGGCCGCGTTCG 5200322 28 100.0 32 ............................ GCGCGATTTCCGCGTCGAGGCGCCGGAGATCG 5200382 28 100.0 32 ............................ TGCCAGCGATCCTGCTCGCGCAGGTTCACCAC 5200442 28 100.0 32 ............................ TGATAACGGCGCCCGTTCCATTCCATCACGTC 5200502 27 82.1 0 ......................TT.CG- | AA [5200523] Deletion [5200529] ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.1 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGCGCTGGATAAGTTGCTGGCGCTGAACTGGCTCAGCGGCATGCGCGACCACTTGAACCTGGGTGAACTGGCGCCTATCCCGGCGCAGGTGCGCTGGCGTTGCGTCAGCCGCGTGCAGGTGGACAGCAACCCGGAGCGCGCCCGCCGCCGCCTGATCAAACGCCACGGCATCAACGAGGCGGAGGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGCTGCGACCTGCCTTATGCCACCTTGCGCAGCAACGGCAGCGGTCACAGCTTCCGCCTGTTTATCCGCCACGGCCCGCTGCTCGACAAACCCACCCCCGGCACCTTCGGCGCCTACGGCCTTAGCGCCCAGGCCAGCGTGCCCTGGTTCTGACCCTTTTTCCCAGCCCAAAACGGAGCCCTTGCAAAATCAAGCACTTGCAAGCGGCTCCGAAAAAAGGGGTAGCGCCGGAAAAATCGGGCAGGTTCTTTAACAATTAAGGCGTTAGGGTTATTAGGCTCTA # Right flank : GGGCTGTTCGCTTCGCTCCTGAGCCCGTCCTACGCAAAATTCCGTGTCCGGAACCAAGCAGCCGGTCTAAGCGGAATCGCAGATACGACTCGCTGCCGCACGGACTTTCAGGCGTCCAAACTACGAAACATCACATGGCAATCCACCAGGCCATACCGGGCGTGGCGGTAGGCCTTGGGCAAGGTGCCGACGATGGCAAAGCCGAGCTTCTGCCATAGCGCCACGGCCACCGTATTGGTCGCCACCACACTGTTGAATTGCATGGCGCTGAAACCCAGTTCGCGCGCCACCTCCAGCGAGTGAGCGCAGAGCTGACCGGCGACGCCGCGCCCGCGTGCAGCAGGAGCGGTCATATAGCCGCAGTTGCACACGTGATCGCCAGGGCCGGCGGCGTTGGCCTTGATGTAGTAGGTGCCGAGAATCTGCCCGCCCTGCTCGGCAACGAAGGGCGCGCGCGGCAGTTCAACCCAGGTTTTCCAGGCCGTTTCGCGATCCATGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //