Array 1 757874-756806 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084541.1 Streptomyces sp. SCSIO 64649 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 757873 30 96.7 31 .............................G GCCCCGCATCGCGCAGGTGCGGGGCCGCAAC 757812 30 100.0 31 .............................. GCTGGTTCGCCAGATCGATCTGATGCGCCAG 757751 30 96.7 31 .............................G CGCGGCTGTACGGCGTGTGCTTCGTCAATCG 757690 30 100.0 31 .............................. GCGCGCGCGGACGACCCCGCGGGCCTGCTGC 757629 30 96.7 32 .............................G GGACCGCACCGGAGAATGGCGAAAACTGCCCG 757567 30 100.0 31 .............................. CCGTGGGACTGATGGCCATCGCCTTCTTCGT 757506 30 96.7 31 .............................T CGTGGCGCAGGAGGGTGTAGATCGACCAGGT 757445 30 100.0 31 .............................. GGAGCGAGCAGCGGACGCAGGTACGACGTGG 757384 30 96.7 31 .............................T CCTTGACTCTGCCGCCCTTCAGCAGGTGGTA 757323 30 100.0 31 .............................. GCGCCGCTAGCTGCCGGTCGGTCACGCCGCG 757262 30 93.3 31 .....................T.......G ACCCGGCGGCACCGCGCCCGGTTGCCCGGGC 757201 30 100.0 31 .............................. GGCGCCGCGACCGCCCATCACGAGTCGTGGG 757140 30 96.7 31 .............................T CGTCACCTGGTGGCGGGTCCTGCGTGACCGA 757079 30 96.7 31 .............................G GCCACGGGTGTGAGTGCGGGCGGCTCACGGC 757018 30 93.3 31 ........T....................G TCTGCCGCTGGCCACCAGGCCAAGAAATGCG 756957 30 96.7 31 .............................A ACCCCGACGGGGTCAGGGCGGGCGTGCGCGT 756896 30 90.0 31 ..............T......T.......A GACTAGATGCGCGCAGCGTGGACGCGGGCGC 756835 30 90.0 0 ..............T.............GG | ========== ====== ====== ====== ============================== ================================ ================== 18 30 96.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : CCGCACATCGGTGTGAATCCACTGGTGGTCACCCGTGGCCTCGGCGAACAGATCGACCCGCTGCTGGTCCACCGTCAACCAGTCACTGACACCCAACTGCTCACCGATCGCCGCGCGCAGCGCGTCCGGCGACTCGAAGATCCGCGGCTCCGTCATCCCGCCAGGATACTCACCGGTAGCAACGGCGACCACACGCCTGCCAAGCCCCGCGCCCCACGCGCTCCGCGCCGAGCGCGAGGCGGCCGAAGCGGCCAGTTGCTCGGCCCCGGGCCGAGCAACTGGCCGCTTCGGCGCCGTGCGCCGGGCGCGGCGGGGCAGGCCGTCAACCAGCCGCGCGCCCTCATGCCGCCACCCCAGCCGACGGCCCACCCGGCCACCTGGCCATGGGGGATGATGGAGGGCGGGAGAGGAGGGGAGGCGGGATTTGTCACTCGGTGTCCGACCTCCGGGAAGTGAATGAAAACGGCCTGCCGCCCGGAGAAAGCCGCAGGTCACGAACT # Right flank : GCGGCGCATGCGGCTCCTCTCAGGTGGGAACATGACCGGCCGCGTCGTGGCTTGTGGGGGCGCCAGGGCGGTGGGCACAACCGAAGCGGGCCAGGTGCGGGTGGGTCCGCGCGGAGCCGTTGAACGGAATGTCCAACCGTCGGAGCGGGACGCCCCACCTTCGCCGCCGGCACAGGGCCTGGTGTTCTGTCTACGAGTCGATCCGGAGGCGGTCGGCGAGGGCGTTGATGGGGGAGGAGCGGCGGCGTTCCCTGTCGCGCAGCTCCGTGGCCACGCGTCGCGCGGTCGCGTGGTAACGCATCCACTCCGGCGAGGCCTTCTCCGCCCGCAGCAGCGCCCGCACCGCCGCACGGTCGTCCTTGAGGTCCGCGTGGGCGAGGGCCAGATCCACCTGGTACCGCGCGTTCCACGTCGCGGGCAGGGAGTCCACATCGGGTACCGAACGTGCCGTGCGCAGGGCCTCGTTGCTCTTCTCCATCTCGACCAGGAAGTTGACCTGG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 803322-802328 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084541.1 Streptomyces sp. SCSIO 64649 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================ ================== 803321 31 100.0 44 ............................... CCCGACCCTGCCGCCCGCCCCGGCGGCGGTGCCGCCGGGTGGCA 803246 31 100.0 43 ............................... CCGCGCAGAGGCAGATCGCGCAGGCTCAGGCGTCAGCGTGGCA 803172 31 100.0 43 ............................... CAGGGGCTCGGGTTGGACGCGGAGTCCATGCTGGCCGGTGGCA 803098 31 100.0 43 ............................... GCCGCCCTTCCACCAGCCGCGGATGTTGAGGGCGAGGGTGGCA 803024 31 100.0 44 ............................... TCCTGGGTGAACCGCGCCCCAATGCGCGCGGCTCGCAGGTGGCA 802949 31 100.0 42 ............................... CACCTACTGGTGGGACTGCGAGGACTGCGGCTCCCGGTGGCA 802876 31 100.0 43 ............................... GATCCGGCGACGCGGGAGATCCGCGCGGCCTTGAAGCGTGGCA 802802 31 100.0 44 ............................... CTCGCGGGCGGCATCACCCACTGCCCCAACTGGCAGCCGTGGCA 802727 31 100.0 42 ............................... ACCGTGTCGCCGGGGTTGGTCAGGGAAGTGGGCCGCGTGGCA 802654 31 100.0 44 ............................... CTGCTCTGCGACCCGTGCGGCGGTGTCTGGGACTCCAGGTGGCG 802579 31 100.0 42 ............................... TTGATGTCGCCGTGCTCGATGTTGCGGATGGCGCCGGTGGCG 802506 31 96.8 42 ..............T................ CTCGGGGACAGGCCACCGGGTGCGCCACATCGGCAGGTGGCG 802433 31 100.0 44 ............................... GGTGATCGAGCTCGACTACCGAAGGCCGACGCTGCGCAGTGGCG 802358 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ============================================ ================== 14 31 99.8 43 GCCGTCCCCCGGGACGGCCGAGGATCGCAAC # Left flank : CGACCCGCTGCTTCTTGCCTCGGGCTTGTTCGTTCTCGACCGAGATGAGGCGGTGCTGCCAGCAACACCAGCCTTTGCCTACGTCGTGCACGAGGGCCAGGTACGCCGCGACATCTCCCGCGCCGAACACATTTCCGAACATGCGCGCCAGCGTGGCAGAACCCCGCAGGTGATCGGCCAATTCATGCCGCACCCCCGCGTCGTTCGCGCTGTGCGCATAAAGCACCCCACCAGTCACGCAGCCCCCACTCGACTCAGACGCGACGACCGTAAGGCATGCACATCGGTAGCGCGGCCGTTTTCGGCAAAGTCACGGGCGCCGTTACTGTCAGACTGATGCCATCTGGCCAGGGAGCAGGAGCGAGGTTCGGGACCCCAAGTGCACACACGACACGCGGATCGCACCGAAGGAGGATGTCCTTGTCATCCGCTTTCGTCCCGCGCTGGGCAGCGAAGAATCTCGCATCGCACGGTAAAAGCCCTGGTCAGAGGCCGTGGCA # Right flank : AACCATTTCGACGGCCACGGCAGCTGGGCGCGCCCGGTGGCGGCCGTCCCCGGGGGGGCGAGGAGGGGGTGACGCGATGTCGGCCTTCGACGATCGAGCTCGGGAAGGCCGACGCTGCGCGCTATTTGGAGCTGCTGCTGGATGGGCTGGCTTTGAGAGAGGTCACGAAGCCGGTCCATGCGTGTTCGGGGAAGACGACTGTCGCTTCGTCGGGTGCCTTGGAGTCCCGCACGGCCATGGCGCGTCCGGTCAGGCGCGCGCCCTGCACGCAGTCGCCGCCTTGGTCGTTGCTGTGGCGTGAGGTGAACCACTCCTCGGTCAAGCACGCGCCCTGGACGCACGCGCCGCCCTGGTCGTTGCTGTAGCTGGATGTGCGCCAGTTGGCACCGGCGAGGGCGCCGGGACCTCGAATGACCATGTCGTCACAGCTCCTTGATCGCTGTCTTGATCATACGCAGGGACTCCTGTGGCCCGGGAGCGAGCGCTTGGAGGTCGGTGAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTCCCCCGGGACGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 1381274-1381546 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084541.1 Streptomyces sp. SCSIO 64649 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1381274 29 100.0 32 ............................. GGCTGGGAGCTCCCCAAGATCAAGTGCTCGAA 1381335 29 100.0 32 ............................. GCGTCGGGCGGGTGCCCGGCTGCGGGAGAAGG 1381396 29 100.0 32 ............................. CCGCAGCGATCGCATAGGTCCCCCTTGCCTGC 1381457 29 96.6 32 ...........G................. CTGGACCCGGGCGCCACGTTCGGTCATGTACT 1381518 29 89.7 0 ..........TG..............T.. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 CTCGTCCCCGCACACGCGGGGGTGTTCCC # Left flank : CCCTCACTGACCAGGAGAGGGACGCCGATGAACGAGAACGAGGGCGGCGAGGAGTGGCCCGAACCTACCGAGTGGCCCGACCCGCGCCACGCCGAAGTCGTGGCCCACCTCAACCGCGCACGCACGCGCCGGGGCGGCGAGCCCGTGTGCGGGTTCGTGCACGAGCCACCGCCGGGAACCACGCCCGCGGCGTAGCACCGCAGCACAACGACGCAGGCCGCAAGCCACCAACCAGGCAGCCGCGACCCGAACCAGCGACGTTCGGTAGCGAGTACGGCCGCAACCTCACTTCCGTATGCCAACGCGGGAAGCGGCGGTCCAGATACCCGCCCCTTCAGCAAGGCCGCGCCACCGCCTCGACCCCCTCACCTACCATCGAAGCAACACAGGCAACCACCGGCCGCGCATCAGCACTTCCTAGCGGCCATACCTGAAAGGGACGCGAGATGCTATCGAATGAAAACGCACCCCACGCTCCCTAAAGCCGCAGGTCAGGAAGC # Right flank : CGTGCCGGTCAGAGAATGTCCGGGGGCAACGCGTCCATAAGAAGCTCGTCGCACGGCAGGCCGTCCCAGTACCCGGCCTCCCGGCGGCGGCCGACGTGGCGGAAGCCAGCGCGTTCATAGGCACGGATGGCGTGAGTGTTGGATGCAAGGACAGTGAGCCAGATACTGCGCAGGTTGGCGGTGTCGAAGCCGTGCCGGGCTGCGAGGCGCACGGCGGGGGCGGCCAAACCCTGGCCGCGTCCTTCGGGGCCGAGAGCGATGGACAGTTCGGCAGTGTGCATGTCGTGGTCGATGGCGAGGGTGACGGTGCCGATGGGTGCTGGCCGCCCGCCGCGCACGTCGTAGATGGTGCGGTGGAGGTGGTCGCCGGCGAGTTGCGCCTCCAGGCCAGCGGAGCGTTCGTCGAGGCATACCTCTGTGGTGCGACCGTAGCCGCGCATGACGCCAGGGTCGTTGTCCCAGCGCAAGTAAAGGGTGAGGAGGTCGCGGCGGAGCGGACC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCACACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1384211-1384484 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084541.1 Streptomyces sp. SCSIO 64649 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1384211 29 96.6 32 ............................A TCGCCTCGACCTGCGCGGCCGGCCAGGGGTCC 1384272 29 100.0 32 ............................. ATGCGGCTGCTGGTGCAGGCGGGGGGCGCCCC 1384333 29 96.6 32 ..............T.............. CGGCCGCCCTGCCCCGCGTCGTTCGCGGGGCC 1384394 29 96.6 33 ............................G ATGCTGGTGTTCGCCGACGGGGTCGGCGGAGGA 1384456 29 79.3 0 ............TC.........TGG.T. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 93.8 32 CTCGTCCCCGCACACGCGGGGGTGTTCCC # Left flank : GAACGGTACTCCTGGCCGCACACTCAGGACAGCGCCCAGCCCTGGCGGGGGCGGGTGTGACGCGCGCGTTCTCCGCGCAGGGGTGGTGTCATGAGGGGCGCCGCATCGGATCGGAAGTTCAGTTCACGGGGGCTTTCGCACTGTGTTCGGAATAAGCAGCCCCTGCCATTACCGCCTGCCCGGCGGGCTCGCCGCCGACTGCATGGCACACCTGCGCGGCCTGTGCCCGGCCTTGCGCGGCGCACACGGGCAAGCGGCCAAACGCGCGGCCAACTCCGACGGGCTGCTGATATCCGTCCTCCACGAATGCCCAGGCGCCGAACGAGACCGCAACCCGCCGCACCGCCTCCCCCTGCCCGCTACGCTGCATGCGCACCAAGGCAACACAGGCAACCACCGACCAAGCCTCAGCACTTGCAGGCAGCTCTACCTGAGAGGCACGCAAGATGCAACCGAATGAAAACGCACCCCAGGCGCCCTAAAGCCGCAGGTCAAAAAGC # Right flank : CGGGGGTGTCGGGCGGGGGTTCGGTGGCCTCGCCTCCCATACGCATGGGCATGGTGTCATGATGGGCGCCGCATGTGACCAGCAGTTCAGTTCACGGGGGGCTTTCGCACTGTGTTCGGAATCATCAGACCTTGCCGCCACCGCCTGCCCGGCGGGCTCGCCGCCGACTGGATGGCGCACCTGTGCGGCCTGTGCCTGGCCCTGCGCGGCACGCACGGACAGGCGGCCAGGGTCGCGACCAACTACGACGGGCTGCTGATATCCGTCCTGCACGACGCCCAGGCGCCGAGCGAGAACGTGGCCCGCCGCACCGCGGGCCCCTGCCCGCTGCGCGGCATGCGCACCGCGAGCGTCGCGCGCGGCGAGGGCGCCGCCCTGGCCGCGGCCGTGTCCCTCGTTCTGGCGTCGGCGAAGATCCGCGACCACGTCGCGGACGGCGACGGCATCCTGGCCAGGCGCGGGCTCGCGACCGCCGCGCGGCGCGTCGCCTCCGGCTGGGA # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCACACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.20,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1809405-1808049 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084541.1 Streptomyces sp. SCSIO 64649 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================================================================== ================== 1809404 37 100.0 36 ..................................... CCGAAGTCCTCGCGCCGTGGATCCGCCTCGTCGAGG 1809331 37 100.0 37 ..................................... GAGTGGGGCGCCGCGGAGTCAGGCTGCGGCGTTCCGT 1809257 37 100.0 36 ..................................... GGCAGGGTGACGTACTTCTACTCCAGCCCGACGCTG 1809184 37 100.0 36 ..................................... CACCAGGTCGAAGGCGAGGTGCGGCGACGGGGCCCA 1809111 37 100.0 37 ..................................... CACAGCGCGCTCCACAGGGACGTCAGCCCCTCTACAT 1809037 37 100.0 37 ..................................... TGCGCGCTGATCCGCGCGCGCGTGGGCTCGGTCACGG 1808963 37 100.0 36 ..................................... GGGCTCGTCCCCGACGACGGCCGCCAGCGCGGCCAG 1808890 37 100.0 35 ..................................... TCCGAGCGGACGTAGTAGATCCGGCGGGCGGTCCG 1808818 37 100.0 40 ..................................... CGCGGTGGCCGATCCGGAGAGCTGGTGGTCGGTCCTGCTG 1808741 37 100.0 35 ..................................... CGCAGCCTCTGGTCGTCCAGCACGGGCGTGAACGG 1808669 37 100.0 38 ..................................... TCCTACCGGCCCTCCGACCTGGTCGTGGATGCCGAGCT 1808594 37 100.0 36 ..................................... CACATCACCGTATCGGGGGCGTGCGAACACCGGGCG 1808521 37 100.0 37 ..................................... GCGGCACGCGCGGTGCCGGGGTGCCCGTCCTGCCAGA 1808447 37 100.0 36 ..................................... CGTCACCTTGCTGTCCCGCACCGGCACCACGCCCGG 1808374 37 91.9 37 ..C..........TT...................... GGCGACACCGCCGTCTACCTCACACCCGCGGAACTGG 1808300 37 97.3 34 .............T....................... GACGCCGACCGCGAGATCTACGAGGCGTTGAACG 1808229 37 83.8 107 ........T....TT.A..G.A............... CGGGCGTCGGCGGCCAGGGTTGCGCGGGGCAAGGGGGGCGGCCGTCCCCCGGGACGGAGGATCGCAACACCATGGCCACGGGCACACCGGTGGTCAGCAGCAGGCCT 1808085 37 89.2 0 .................A......T..A........G | ========== ====== ====== ====== ===================================== =========================================================================================================== ================== 18 37 97.9 41 GTGGCGGCCGTCCCCCGGGACGGCCGAGGATCGCAAC # Left flank : CGGTGCGGCGGGCGTTGACGGTCGTCGGGTTGCCCGTCCGGGTGGCGGCCAGCAGGTAGGAGTCGTGCCAGACGAACGACAGCGGAACCAGGCACGCTTCACCGTCCGGCCCGGCCGTGGAAACCCACAGGTCGACATCCTCCGCGAGCCGCGCCAGTGCATCCTGCTTGCGCTGCGCACCGTCACGTGGGGCGGGCTGTGTCTCTGCCATGGCGATCACGCTAGCCGGGGGCGGGTCGACCGGCCATCGGTCATTGGCCGTAGGGCTATGTGCCGAAGTCGAGTGCCTTCGGGCGCACACAAGGTAGCTTCTCGGTGTGGGAATCCGTGTCGCTGCGTCGACCCGAGTCCGGTCCTCGGGCACGGCACAGGTTCGGAACCCCAAGTGCACACACGACACCCGGATCGCACCGAAGGAGAATGTCCAAGTTGCCCGTCCGTGCGCCGCGCCAACCCCGGTCGGCACAACGGCCGAACGGCAAAACCCCAGATCAAACACC # Right flank : GGCGAGCCTTGTGCCGAGACGTTTCGACAACTTGGTGGGTGACGGCTGTCCGTTGGGGTGGCCCGGAGGGCCCGGTCCGGGGGGTTGGGGGGTCAGTCGCCTTGGGACCAGCTGGCGGTGGGGAAGGTCAGGTAGACGCCGAAGTCGCTGAGGCCGGTCGCGGCGGCGACGCTTTCGTGGAGCAGGTCCGCGCGTTGGGTGCGGTTCGCGTCGCGGCTCGGAAACCACTTGGACCGCACCTCGATCACAAGATCGAGGCCGCTCCGGTCGAACGGGCCGAGCGGCCGGAAGCGGATCTCCACGTCGCCGGGCCGCAGGTCTCCGTCCCAGGGCTCCTCCGGGCACTCGACGGCCTCGGACACCAGCGCGGGTAGGACATCTCCGAGGCGGTGCAGCGTCTGTTCGGGTACGTGCGGCGCGTAGGTGACCTCGACAAGCGGCATCCTGTCACTCTAGACCGCGAACGTCGCGCGCATGCCCGTCTCCCCGCGCGGCGCTGG # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGCCGTCCCCCGGGACGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.80,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 6 1885351-1885990 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084541.1 Streptomyces sp. SCSIO 64649 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1885351 29 82.8 32 T.ACC..T..................... GCCCTGCGCGACGCGACGTGCGCGCAGGTCGA 1885412 29 100.0 32 ............................. CAGTTGATGTCCCAGCGGTTGACGATCGTCGG 1885473 29 100.0 32 ............................. ATCAGCGCGGTCTCGATCGCCGCCCGCAACAA 1885534 29 100.0 32 ............................. ACTCCGCCGACCTCCAGCGGCGCCGCGGACGG 1885595 29 100.0 32 ............................. CCGTTCCGCAGGAACTCGCGCCATGTGGGGGT 1885656 29 100.0 33 ............................. TGCTGCGTGCCCGTCATGCTGGTGGTGGCGTCG 1885718 29 100.0 32 ............................. CGGTGCCGCTCACTCCCCAGGCTGCTGATGCC 1885779 29 100.0 32 ............................. TCCTGGGGTGTTCGCTGGCGTGTTCCGAAGGT 1885840 29 100.0 32 ............................. TGGCCGCACTGCGCACGAAAGACGCCGTCCGC 1885901 29 100.0 32 ............................. AGCCTCGAATTGGGGCGCCTTTTCGGCCGGAT 1885962 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.4 32 GGGGTCACCCCCGCGTGGGCGGGGAGCAG # Left flank : CCACCGATGCCCGCCCGGGAGCGGCCCGCAGCCGCTGGCCGGGGTGGACGTGCAACGCGATCTCTCACCCCGGCAACGCGAGGGCCGCGCCTGCGTCCTGTGCCGCGCCGGACTGCGCCGCCGTCCCGCCCGCCTGCTGGCCACCGTGCGCGGATACCGGCTCATGGCCTGCGCCCCGGCATGCGAGGACCACTCATGAAGGGCGTGCTGATCTCCGTGGAGGTCGACGCGACCACGGTGGCCGTCGGAGACCAGATCATGATCGGCGGGCAGTGCCACACCGTTCAGGACATGATCGCCACCGGCCCCGGCCGCAAACGCCTCCTCTTCACCACCGGCGAGACGTTCACCATGCAACGCACCACCATCCTCTGGGCCGCCCGCCGCACCGACCCACGCCTACGCAACAGACTGCGTTGACCCGCCCGTTCAACAACTCCGGACAGACACCCTCCGCCTCCGGCACGCCCCGACCGAACACCCCTTCCCCCGATCACTCA # Right flank : GAGAGCGTGAGCTGCGGTTTTCTGCCGGAGGCAGGTCGTTTTTACTTACTTCCTCGAAGTCGGACGCCAAGCAGCAAAGTACCCTCACCGACTCTCTCCGCGCTTCCTCCGTCGTCGATCAGCGCACATCCAGCATTTCGACGGAGCGCCCTCGGGCCTAGGTTTCCGGGAGGTGGGGTGTGGCCGGTCCTGGTCGGTGGGGCGGGGGCGGGGGCAACCGGCGGGCGGTGTCGGTCGTCCACCGGGCATGACCGACGAGCCTTCCGCCGCTTCCGGCGGCCCGCTGGTGCCGTGGCCGCACTGCGGCCACGGCGCCACCGCCGATGACCGGGTCGGCTGCCGAGGCGTCCGTATCGCCGGGCGCGCCGCGTGCCTGGTGCACGTGGACGAGGCCGAACGCGCGGCGTATCTGGGCGGGTTGGCGCCCGGCGCCGATGTGGACCATCGCGGCACCTCGTTCGATTCCCGCCTGCTCGACCGTCTCCTCGCCGCGCTGCGCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGGTCACCCCCGCGTGGGCGGGGAGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 7 2023292-2024530 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084541.1 Streptomyces sp. SCSIO 64649 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2023292 30 100.0 38 .............................. GTGCTCAGGCGTCGGCCCGTCGGCGCCTGCTCCGCCGG 2023360 30 100.0 37 .............................. CCTTCATCAGCCGGGCGTAGCGGTACAGGTCACGGTC 2023427 30 100.0 38 .............................. GCGTACGCCGGGGGCGCACGACAACAGCAACGCGCCGC 2023495 30 100.0 36 .............................. CCGTAGGGGCACAGGCCCCGGCCCGCGGTCTCGGTC 2023561 30 100.0 36 .............................. GCGCCGGTCGGCGTGGGCTTGGGCTTGGCGGTCCGG 2023627 30 100.0 37 .............................. ACGGCTGGCCCCCAGAGCAGCGCGCGGGTGGAGTAGC 2023694 30 100.0 37 .............................. GACAGTACCGGGACGAGCACTTCGACGAGCTGGCCGA 2023761 30 100.0 38 .............................. TGGGCTGATGCATCCGAACTGCCGGCACACGATCAGCG 2023829 30 100.0 37 .............................. CGGACGACCCCGAGCTGGCCGCGCCCGTGATGGCCCT 2023896 30 100.0 36 .............................. CGGAGATGACCAGCGGGAGCGGGACGCCGTAGCCGT 2023962 30 100.0 38 .............................. TTGCCGCTGTACCAGGCGGCGTACCGCGACGCCGCCGG 2024030 30 100.0 37 .............................. GAGATGCCACCCGGGACGTGGAGGCCGGCGACGCGGC 2024097 30 100.0 37 .............................. TTGATCGGCTGGACGTTCTCGACGAGGTACGTGTTGT 2024164 30 100.0 37 .............................. ACCGCGAGCACGGCGGCGGCCAGCTCGGGCCGCACCT 2024231 30 100.0 37 .............................. CCAGCTCAGCCGCCCGTTGCCCTGCCCGCGACCGCCG 2024298 30 100.0 38 .............................. GTGCTGGACCGGCGCCGGTGGTGATGCCCGACTGAGTC 2024366 30 100.0 37 .............................. GGCACGAGCCACCACCGACCCGGCTCCGTCCAAGTCG 2024433 30 86.7 37 ...............A.......CCG.... CATTACACCAAGTAGTTGACCTGGAACAGGCTGAGGA 2024500 30 76.7 0 AA.....C..T......A.....G.G.... | G [2024517] ========== ====== ====== ====== ============================== ====================================== ================== 19 30 98.1 37 GTCCTCATCGCCCCTGCGAGGGGTTCCAAC # Left flank : AGCGGGCGGGCGCGGGGAACTGGAAAGCAGTTTGGCAGGGGCAGATTGACGAACAAAGGCCCCGTTTCGGGCACCCGCAGCCGGAGTGACAGCGTTGGTCACACAGCCAGACACGCAGTGGCCCCCGCCCTCACGGGTGGGGGCCACTGCGACCTGTGGAGCTAAGGAGAATTGAACTCCTGACCTCTTGCATGCCATGCAACCCCGCCCCTACAACACCAGCCACCCCGACCGCACGCCCCACCCGAACAGCCCACCCACGTCCGCGACCGCCCCTCACGGTCCATGACCGTTCTCCCTAGGCTGGTCGGGCCCCGCGCGCCCCCTCCCGACTCCAGCGCGAAAGCGTCGGGCAAGCCGCAAGGTGGCATCATCGGAGCAGTGCAGTCCCCCGCAACTTCAGCGACACGCCAGGACCGTCGACACAACCGAAGGCTCGCTGCAAAACGCCTTCGTGCTCCCGCACCGCTACCTACCCCTACCTGCGGCTTTACCTTGGG # Right flank : CACGGGCTGAAGAGCGACCGGAAGAGGCATGAACCCTCGGTTATCTGGTCGCCAACCGGAGCCTGCCCTGAACGACGCGGGCCACGGCATGGTCCCGCAAGTAGGTCGCTAGTCTTCAGACCCGGCTTGACTCGCGCACGCCATGTCGGAGTGCACGACGGAACGATGCCACTAGAACCAGAGCATTGCGGTTGCAACGACGATGAGGCCACCGACGGTTCGGCCACACACACCTGAAGGCGATCACGGAGTGCGACGGGGCGTGCCGGCGGGTCGCGTCCAGTTGCAGTCAGGGCGCATCGCGGACCGGACGCCAAGATCGTTCCAGCTTCGCGGCTGGCGCGACGCACCACCCTCAAGCCGGAGCCCAGCCCTCTGGGCAGATATCCCACTGAATGCCCTGGTAGAGCGCGTGACGAGGCAGGAACGACCACCGCCCCGGGGCCGGCTACTGCCCCGGGGCAATGCACGTACCCGATCGGAGCGGGAGTCCCCTCGTA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 8 2034317-2037265 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084541.1 Streptomyces sp. SCSIO 64649 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2034317 30 100.0 37 .............................. TAGCTGGTGGGCTGTTCGCGCATGGGGTGGGCTCCTA 2034384 30 100.0 38 .............................. ATGGACTCCAGCTGGGCGACCAGCTTGGCGAGGTTCGA 2034452 30 100.0 37 .............................. GGCAAGGTCAGCCGATTGGGGTGCCGCAGGTGAGGCA 2034519 30 100.0 37 .............................. ATCGCGAACGTCAGAGCCTGGGCGGCCTCGGCGAACG 2034586 30 100.0 36 .............................. CGCGGGTCCAGGAGTGGATGGCCGACGAGTCGGCCG 2034652 30 100.0 37 .............................. GTCGCGTCCGGCAGCGTGTCTGCGGCGGCGTGGACCG 2034719 30 100.0 35 .............................. GCTGTCGGCCTCCTACCTCCGGTTGCTTCGAGGGC 2034784 30 100.0 35 .............................. GCGGTGAGCTGGTCCGCGGTGATCGCGCCGGAGTA 2034849 30 100.0 36 .............................. AGGACGGCCCCGACGGCGCCAGGAAGCTGCCGATCA 2034915 30 100.0 35 .............................. ACCCGGCGCGGGCGCCCCCCGATCCCACCACACCA 2034980 30 100.0 36 .............................. CACCACCCCACCCATCCGATCGCACAACCCGATCGA 2035046 30 100.0 37 .............................. ACGACCTCGCCGCCGCCAAGGCGTCGGAGTGGACCGA 2035113 30 100.0 36 .............................. AAGGGCGGCGGCGGGACCCGCGCCGCTGGCTGGCCG 2035179 30 100.0 38 .............................. GGACAACGCTCGGCACGGCGCTGCTGCCGGTGCTGCTG 2035247 30 100.0 38 .............................. CGCCCTCGACCCCGGTGTACCGCCGGTGCGACGTGCAG 2035315 30 100.0 36 .............................. ACGTGTCGCACGCCTGGCTGGCTCGCGGGCGAGCTG 2035381 30 100.0 35 .............................. GTGCCGATCGTGGCGATGAACGCCTCGTTCGACCT 2035446 30 100.0 36 .............................. TGCGAGTGTGACCGGCCAGGCCGAAGGATCTGCCGG 2035512 30 100.0 38 .............................. TCGGGCGGGATGGTGGGCTGGGTGAGGTCGGGCGGGAG 2035580 30 100.0 37 .............................. GGATGGGCGCGGTTGCCTGCTGCTGCGCGGCGGTCAT 2035647 30 100.0 38 .............................. GCCCAGCACAACTACCAGTGCGCCCGCTGCGGCACCTG 2035715 30 100.0 35 .............................. CGGTAGGGCTCGACCTTCTCGTTGGGGGCCTTCTT 2035780 30 100.0 37 .............................. GCGACGCCGGCGGCGTGGAGTGCGTCTCGGATGCGGC 2035847 30 100.0 36 .............................. AAGTCACACCAGCCCCGAGGGTCCCCAGCGTGACGA 2035913 30 100.0 36 .............................. ATCTCGGGGGACACGGCGTGCGCCGGGTCCAGGCCG 2035979 30 100.0 36 .............................. GCGACGAGCGGGACGGCGACGGGCAGCCCACCACCA 2036045 30 100.0 35 .............................. TAGGTGATCGTGTAGCGGTGCCTGGGCGTGTCCTG 2036110 30 100.0 35 .............................. TTGGCGAGGTCGGCGGTCTGCTCCAGCACGGCCTG 2036175 30 100.0 37 .............................. GGCACGCCGGCGACTTCCCACGCGCCGGTCCGCTGGT 2036242 30 100.0 37 .............................. GTGGCGCGGATCATGCCGATGTAGCCGATGCGGCCCC 2036309 30 100.0 36 .............................. GCGAGGAGCCGGAGGTCGACCCGCTGGACGTGCCGC 2036375 30 100.0 37 .............................. TCCTGGGTCAAGCCGGGTTGGGCGGTTCGGACTTGGG 2036442 30 100.0 36 .............................. CGGACACGGAGACGGTGCAGCGCCTGCGCGGAGAGG 2036508 30 100.0 35 .............................. GCGTCCCCCGCCACGAGCACGTCATGATCCGCGAC 2036573 30 100.0 36 .............................. GGGTCGCCGCTGTGGTCTACGGTCGGTGCCTCACGT 2036639 30 100.0 37 .............................. CCGTCGTTCTGCGCGCGGCGGTACGCGTCCGCCGCCC 2036706 30 100.0 36 .............................. ATGATCGAGCGCGGCGCTGGCGGGGCCAGCCCGCGC 2036772 30 100.0 34 .............................. CCGGCGGGGCCGTGGTCGGTCGGCCGGGTACCGG 2036836 30 100.0 35 .............................. CGTTCGGCGACGCGCTGCGTGACGCTGTCGCCCGC 2036901 30 100.0 36 .............................. CGGTAGGGGGCGTGCCGGGTCTGCCACACCCCGCCC 2036967 30 96.7 36 ...............T.............. GTGCCGAGGTGTCGGCAGAGCGCGGCGTACTCGCCT 2037033 30 100.0 37 .............................. ATCATGACGGCTGTGTCCGCCATGTCTCCGGTCTGCG 2037100 30 90.0 38 .....T.......G............G... GCTCCACCTGGAGGCCCTGGTCATCACCGCCCGCACCT T [2037123] 2037169 30 93.3 37 ...................C....T..... TACTCGCCCGGGTGCTGCCAGATCACGGCGTCGGCGC 2037236 30 76.7 0 .........A....CG.....C..TT..G. | ========== ====== ====== ====== ============================== ====================================== ================== 45 30 99.0 36 GTCCTCATCGCCCCTCCGAGGGGTCCCAAC # Left flank : CAACCACCGATCGCTCGGTCGGCCCGTTGCCTATGACGAATTGATCTACCTCGACGCGCTCGCCCTCACCCGTCACTGCTTGGAAGGAACGCGTTACAAGCCCTTCCGCATCTGGTGGTGAGCCCCCGTGTACGTCATCGTCGTCTACGACACCGCGGCCAAGCGCAACCCCAAGATCCTGCGGACATGCCGGAAGTACCTCCACCACGTCCAGCGCAGCGTCTTCGAAGGCCAACTCACCGAAGCTCAGCTTCGCCGCTTCCAGGCTACGGTCGAGGAAGTCTTGGACCTCACCTACGACAACGTGCTCGTCTACACGTTCCCGCCCGGCACGACCCCCATCCGCCATGAATGGGGCGCCACCGAGCCCACCCCCACCGACGTTCTGTGACCCCGGTTTCAGCAACTCACCGGGCCGCACAACACGACCGGCGGTTCACTGCACATGCGGACTCGCAGATGCCATCAACGCCTACGCTGACGTGCAGCTTTACCCTGGG # Right flank : CAGGAGACGGAATGCGCGCGATCACCCGGTGGACCCGGGCCTCTGGGCCTTGCGAGGAGAACCGATGAGAGGAGATCACCGTCATGGCCGAGTCAGCTGCCGCGCTCCTTCGCAGCAAGGCCCCGACCCCCTACCTGTCCCCAGGGGGCCCGCAGTGTCGTAACGTGCTGCACATGTCGAGTCACTGTGTGATCAGGGGGTTGCGGTGAGCGCTGCTCGGTGGCCGGTTCCGCGGAGTCCGTACGTGATTGAGCCGGATGAGGGGCCGCAGACCGAGGAGGAGTTGGTCGAGGCCCTGGCTCCGTGGCCGGAGGAGGTCGAGCGGCTGCGTGCCGCCCTGGCGGAGGCCGGCAGCGGGCGGGAGCGTGCGAACGTTGTCGCGGCGGGCCGGATGGCATGGATGACGCGCACGCACCCGGACGTTCGAGCGGCGGTCGACGCCAGTGGCGAGGGCCCGTGTCCGGGGGCAGCGCCGGCCGAGTCCGTGTGGGCGGATTACG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTCCGAGGGGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 9 2682904-2684067 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084541.1 Streptomyces sp. SCSIO 64649 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 2682904 28 100.0 38 ............................ GCGACCATGCCGAGGAACCCGCCGGGGTCCTTGACGCC 2682970 28 100.0 40 ............................ AGCAGCCAGCGGCCGAGCGGGGTCTGCTCGATCGCGCGCC 2683038 28 100.0 41 ............................ GCCAAACGCGCATTGATGATTCCGATGAGTTCGTTCACGTC 2683107 28 96.4 39 ..............G............. CTATCGCCCTCGCCGCGCTTGAAGGGATCCGGACTTGGG 2683174 28 96.4 39 ........G................... TGGACGGCGAGGGTCTGGAGCAGGGCGCCGAGGGCGAGG 2683241 28 96.4 42 ........C................... ATGCCGGGGGCGATGTGCGGCCAGTCGTCGATGTGTGCGGGG 2683311 28 96.4 42 ...........G................ TTGCCCTGCGACATGGCGTTGCACATCGGCACGACTTCCGGG 2683381 28 96.4 40 ..............G............. GGCGACACGGCGTGCGACGGGGGCATGCCGGGGGTCCAGG 2683449 28 89.3 37 T.............G.....A....... CCCAACTCCGCCGCCGCAACCCCGGCGCCCGCGGCCG 2683514 28 92.9 36 T.............G............. ACGCGCGCATTCTTCGTGGTTGGGTACTGATCCACG 2683578 28 92.9 40 T.............G............. CAGGGCATCAGCCCCATGCGCCTGGATAAATGAATTGGCG 2683646 28 100.0 38 ............................ CGCCCTGGACGAGTCCGATGAGCAGGCGGCCGGAGGTG 2683712 28 96.4 41 ..............G............. GTGTGCGGGACCCACGTCGTCTCCCGCGTCGTCTTCCACGG 2683781 28 100.0 35 ............................ GGGGCATACCCCTCGCGCAACCCGACGCCGACGAG 2683844 28 96.4 37 .............G.............. GCGGTCATGCGGTCCCCCACACGAGGTAGGTGGCGCG 2683909 28 100.0 38 ............................ GTGTCCGACACCCGGTCGTAGGTGTGCCAAGCCCAAGG 2683975 28 100.0 37 ............................ GGCGGCCCGTAGAGACAGCGCCCGCCGGGCCCGTAGG 2684040 28 85.7 0 T..............A..........GG | ========== ====== ====== ====== ============================ ========================================== ================== 18 28 96.4 39 CCCTCATCACCCCAAGTGGGTTCGCAAC # Left flank : CGACCGGCCCCGTCCCGGTCCGCCCGCCCCGCCTCATCCCCCGCGAATCCACCGGCCCCGCGCCCGTTTAGGCGTGTCCGCGTTGCACATCCGTTGAGCCGCCCGCGGGAACGCGCGCCCCTCGTCGCGCCCTCGTCGCCAAGGCGCGCGACGACGGTCGAATACCTGGCCGGCGGCCGAAGCCTCCTCCACCATCGAACGCACCGGTCGGCCGTCGGCGCCCGGTGGGCCGACCGGGGCACGGCGAGAACCCACTCGCCGTGGCGCTCAGGCGTCTCGGGACCGATCAGGGCGCGGCCCGACATGAGCTGTTCGAACTCGGCCACCCGCAGCGCCGGATGCGCCTAAGCTGACCCGAAGCACCCGCGATCACGGCAACGCCCCCCTCCACCCCACCCGAGCCTGTGACCTGCACTGATGCACTACCGACGAGTCACTGCAAAACCCAGCCCCAGCCACCACCCAACAGCCCCACCGACCTGGCCCTTTACCCTCGGGCC # Right flank : GCCACGCCCCGCCGCCCCGGCGCGGCGCACTCGCGCTCGGCGCCGGGCGCCGGGGCAGGTGGGCCCCGGCGCCCGGCGGCTGCCGGTCAGGCCGGCGGCTGCCGGTCAGGCCGGCGGCTGCCGGTCAGGCCGGGGGTTGCGGCTTGCGCATGATCTCGACCAGGCTCGCGAGGCTGTCGGGGCCGTGGCCTGCCGCCGCGGCCCGGCGCATGGTCGCCTTCAGCAGCTCGGGCAGGGAGTTGTCCACGCCCCTGGCCGCCGCGGCGTGCAGGAGGTGGTCGATCGCCGCGATCTGCACGTCGACGGTGGCGTCGTCGCCGGGGTAGCGACCGGCGTCGACCTGGGACGCGTACCCGGTCATGATCTCGGTGACGGTCGCCAGCCAGCGGATCGCTATGGGCGTGAACGACTCCGCGGGTATCTTCTCCGACCCGACCAGCGCGGCGCCGTGCAGCCAGCCGGCCATGGTGGCCCACATGAGACCGAGCAGACCGGCGTCG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCATCACCCCAAGTGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 10 4147950-4149686 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084541.1 Streptomyces sp. SCSIO 64649 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4147950 29 100.0 32 ............................. TGCCGGGAGGTGCCCGATGACCGCCGCCGTGT 4148011 29 100.0 32 ............................. CGTTCCGGATTCCGGACCCGCCTCCGTAGAGG 4148072 29 100.0 32 ............................. AGCGTGTGCAGCAGCACCGTGTGGTCCAGCGG 4148133 29 100.0 32 ............................. GTTCGCCGAGCGCTGGCGCGGCACCCCGGGCC 4148194 29 100.0 32 ............................. ATGCCAGCGGCCGGGGAGCAGGGGACGGCGCC 4148255 29 100.0 32 ............................. TCTCCATCGCCGCCCGCCGCGGCATCATCCGC 4148316 29 100.0 32 ............................. ACGTGGCAGAAAAAAATGTGACGAAACATCAG 4148377 29 100.0 32 ............................. ACGTCCATTCCCGGAAACCCCGGGAATGGAGT 4148438 29 100.0 32 ............................. GGCGGCGTGGTGGTGCACCGCGGGGACTGCGC 4148499 29 100.0 32 ............................. TCCAGCACCCGGGCGCGCTGCTCGGCGCAGTC 4148560 29 100.0 32 ............................. GCGGCGGGCCCGTCGGTCTCGCGGTTGGAGTA 4148621 29 100.0 32 ............................. ACCACCGCGTGACCGTGTCGAGCCCGGCCCGC 4148682 29 100.0 32 ............................. CGCCCCACCTTGAAGGCGCTCCGGTTGAGGGT 4148743 29 100.0 32 ............................. GCGGGGTCCGACTCGCCGATGGCGCCCGCCTC 4148804 29 100.0 32 ............................. TCGCCGCGCCGGCGGCGTGGGGCGGGCTGATG 4148865 29 100.0 32 ............................. GGCTTGCGGCGGCGTTGTGGCTGCCGCACGGC 4148926 29 100.0 32 ............................. TCCCGCTGGAATATGCGCAGCCCGGCGGGCCT 4148987 29 100.0 32 ............................. GGTTCTGCTCACCCCCGTGTGGGTTGACGGTC 4149048 29 100.0 32 ............................. CGAAATCGGTCGGGCGAACTCCTGAGGAACGG 4149109 29 100.0 32 ............................. GTCAGGAGCGCGAGGATGATGGTCACGGCGCC 4149170 29 100.0 32 ............................. TGCCACAGCGGCAAGACCTGCGGATGCGGCCA 4149231 29 100.0 32 ............................. GCCTGCGGACGTACTACCGTGAGCACGGTCAA 4149292 29 100.0 32 ............................. GCGGCATCGGTCGGGATCGTCCACGGCGACCT 4149353 29 100.0 33 ............................. GCCTCGGACCAAAGGGGCGCGTCCTCCACGTCG 4149415 29 96.6 32 ...T......................... ACAGGTCAAACAGAACGCAGTTGCCTGTGCTG 4149476 29 100.0 32 ............................. TACAGCGCTTTCACCACGGCGGTGCTGGAGGG 4149537 29 96.6 31 ............T................ CGATACGCTGCCGGTGAGCAGTTGAAGGAGA 4149597 29 93.1 32 .G............T.............. TGGGTTAGTCCAGCCGTTGTGCTCGGCTGACA 4149658 29 79.3 0 G..........G.A.......A..G...G | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.8 32 CTGCTCCCCGCACCCGCGGGGCTGTTCCC # Left flank : ACTGTCAACCGGTGATCGGGCTCATGCCCATTCCGTTCAGCGGCCACGTAGGGCCGGACAACGGCGCCGACCATGACCGGCTCACACCCGCCCCCCAAGCAACACACATGGCCACCACCTCCAGCCGCCGAAAGCCGGCACGCACCGAACAACAGCGGCGATGACGCGGCCAACGCCAGGATCGCGGCACGCCTCGGGGAACCGCGCCGCGGCCTCTGGAAGCCGCGGAACTGTCCCACACATATCCCACAGCCGACCCCGCCGAGACTTCCAGCGGCCCCGCCCCGCGCCCCCATGGGAGCGAGCCAGGCGACGCACTCCATCCCTCCCCGCAACCCAGACGCCCCCGTGCGCGATCTGGCAACATCGGGAGGGCGCACGGAGAACAGCACGTCCATCCGCGAGAGATGAGCCATATGGCCAGTCCGCCCCATAAGCCCGAATCTCAAGAAGTAAGTAAAAACGCGGCTCCCAGCCGATAACGTCGCAGGTCAGCTTCT # Right flank : GACCCGTCATTCTGTGCCGAATGCGTCCTCTGAGCGGAAGGGCAGCCTCGGATACCGGATGACCGAGCCACACGCCCCCGAGTGGTCCCCGCGCAAGGGTCCTCGCGGGGGCGCGGCGGCCGTTGCGGAGAACACGACGTGTTCCGCAACGGCCTACCAGTCGGCCGAGCTTACTCAGTTGCCACTCACCACAATTGGGTAAGCCCCGCCGTGATCACGGCCACTCAAAACCGGTGCGTGCACGGGTAGTTCGCTGGAGGAGTACTCTGGTCGAGCCATCGCACCCTCGCCTCGCGCCGGGGGGTGAATGGCATGCGGGCATGCCGATGGCCGAGCCCACCAAAGCTCCGTGGCAGCGGAGATCGATCGACCCGGCCGTGTCCCGCTCAGAGGCTCGTAGCGTTAACAACTCAAAGGAGACTTATCCATGGTACAGAGGAGCGCGGCCAGCAGTGGAGCCGGCGGTGACGCAGCGGGGTATCTGCCCGTGCTCGTGGCCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 11 4160108-4161476 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084541.1 Streptomyces sp. SCSIO 64649 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4160108 29 100.0 32 ............................. ATCACCGAGAGGTCCATGGCGGCCTCGGCCAT 4160169 29 100.0 32 ............................. TGCGCCATCACGGTGGTCTCGTACAGGGTGGC 4160230 29 100.0 32 ............................. AGCATCGCGCCCGCGACGATCAGCCACGAGAG 4160291 29 100.0 32 ............................. CAGCTCAGCCCCAAATACATGACCCAAGACCA 4160352 29 100.0 32 ............................. CGCGACTGGGAGGGCGACATCGCCCAGGCGGG 4160413 29 100.0 32 ............................. AAGGAGACGGCGCGGGGTTCCGCCCATCCATC 4160474 29 100.0 32 ............................. CCTAGCGCGCCTCGCTGGATGTCTTGACGGAT 4160535 29 100.0 32 ............................. GCGATGCCCGAGAGCGTTCGTGATCGCCTCAG 4160596 29 100.0 32 ............................. GTGGCCACGACGCGCTCGAAGAGGTCGACGGC 4160657 29 100.0 32 ............................. CCCGGGGCGGCCCGCGCGCATCTGCGAGAGGA 4160718 29 100.0 32 ............................. GAGCCTCCGCGCCGCCAGGCGCCCGAGGGGGG 4160779 29 100.0 32 ............................. GCGACGCCGTGGTCTTGCGGTACACGTGCAGT 4160840 29 100.0 32 ............................. GAAGCGCGCGCCCACCACCGCATCGGGTTCTC 4160901 29 100.0 32 ............................. CCAACGAACGCGAAGAACAGCGGCAGACCTGA 4160962 29 100.0 32 ............................. GTGCCGTTGAGCGACGCGGGCGCGGTCGGCCG 4161023 29 100.0 32 ............................. TGCGCGCTCACGCGCGCGGTGGCCGCGCTGGT 4161084 29 100.0 32 ............................. GCGACCGCCGGGACGCTGGTGGCCACCAGCCT 4161145 29 100.0 30 ............................. TGCACCCCAACGGGGGCTCCAGCATGCGTG 4161204 29 100.0 32 ............................. CCTCCCGACTACCGTCACGGACGAAAAGACTG 4161265 29 100.0 33 ............................. TGGCGGAGGTATGGCGCCACCTCGACGTCAGCA 4161327 29 93.1 32 ............T...............G CGGGCGGCCGAGGAGCGGTCCGTGGCCCGGCA 4161388 29 100.0 31 ............................. ACCACCCACAGCGCGGCCAGGCTGGCGTGCC 4161448 29 79.3 0 ..........TG......T.....CC.T. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.8 32 CTGCTCCCCGCACCCGCGGGGCTGTTCCC # Left flank : GGACGACGAGATCATCTGGTGACCGTCATCGTCCTCACCAACTGCCCCGCCGGCCTCCGCGGGTTCCTCACCCGCTGGCTGCTCGAAATCTCCCCCGGAGTCTTCCTGGGCGCCCCCTCCACCCGCGTCCGTGACCTGCTGTGGGCTGAGGTACACAAGTACGCCGGCCAGGGCAGAGCCCTTCTCGCCTACCAGACCAACAACGAGCAGGGCTACACGTTCCAGACACACGACCACTCATGGCATCCCACGGATCACGAAGGCGTGACTTTGATCCACCGCCCCACGCGCAAACCCACGCATCGAACGGAACCCCAGACAGGCGGCGGCTCCCGGACAGCAGGCTGGAGCAAGGCCGCGAAGCGCAGGAAGTTCGGCGGCAGATGACCGAGCCGTCGAGGCGGATGACATCCGACATGGCCGCTATGGGTGAAATGGGAACTTCTTTGGAAGTAAGTAAAAACGGCCTCTCCGCCAGATAAAAGCGCAGGTCAGCTTCT # Right flank : CTCGGGGAGCAGGTCGGCCGGGGCGTTGCGGGCGTCGGTGATGCGGGCCGTTCACCGGCCGTGCAGCACGGGGGCGAGGTCGCCCCAGTTCGGGTCTGTTTCGGGTGGGTGCTTGGCCGGGGCGCGGGGGCGGTGTGGTGCTTGGCTGTGAACGGTCGCTCGTTGTGGGCTGGTTGGTCGGAGTCAGCCGGGACGGGGCGGGTCAGTAGGTCGACGGTGATGGTGGTGATGCGGGTGGTCGGGCGTTCTGGCAAGTCCGGTGTTGGTGGTCGAAGTTTGGGGTTGGGTGTTGGGCGTTGTGGGTGGCAGTAGGGTGCGTCGGGTGGATCAGGTTTCGCGTCTTCCGGCCTTGTTTCGTCTTGTTGTTACGGGTGGTGGGACTGGGGGGCATACGTATCCCGCGTTGACCGCGGTCCGTACGTTGCAGGCGCGGTTGGCGGCCGGTGGTGGTGTGCTGGATGTGTTGTGGATCGGGACGGAGACCGGTCTGGAGGCGAGGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //