Array 1 347946-350625 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDCY01000004.1 Listeria monocytogenes strain ICDC_LM0078 LM0078Scaffold4_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 347946 36 100.0 30 .................................... CCATGATTGATGACAAAACGGTATTTTCCT 348012 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 348078 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 348144 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 348210 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 348276 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 348342 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 348408 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 348474 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 348541 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 348607 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 348673 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 348739 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 348805 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 348871 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 348937 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 349003 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 349069 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 349135 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 349201 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 349267 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 349333 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 349399 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 349465 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 349531 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 349597 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 349663 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 349729 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 349795 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 349861 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 349927 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 349993 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 350059 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 350125 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 350191 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 350257 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 350323 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 350389 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 350455 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 350521 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 350587 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [350612,350618,350621] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //