Array 1 1337340-1334982 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAL01000002.1 Bifidobacterium crudilactis strain LMG 23609 Contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1337339 31 100.0 33 ............................... TGCTGGGTGTTGCGGCTGGTGCAACCGCTGGAC 1337275 31 100.0 34 ............................... CACGGACGCCACTGGTGGACGTTATCAGCGTAGT 1337210 31 100.0 34 ............................... CGTCGAGCGACTGAAACCACGAGTCCCTATCCTG 1337145 31 100.0 34 ............................... CACTTCCTCGGCGCTCGGCTGGTAGTCGAGCCAG 1337080 31 100.0 33 ............................... GATTTCAAGGGTACCCCAGTAAGAACAGTGACA 1337016 31 100.0 34 ............................... CACATTAGTTGCGATAACTCCAAAAAAAATGACC 1336951 31 100.0 36 ............................... GTCGGGTCGGCCCTGTTGTTGGACGGGTATTGCACG 1336884 31 100.0 33 ............................... AGTTGGCGCAGCATCGACGTCACCAACGCCAAC C [1336878] 1336819 31 100.0 34 ............................... AAAGATACTGTGAGGAATGGCTACCGTGAAGCGG 1336754 31 100.0 33 ............................... AGATTATGTGCAGTGTTTGAACTCACAAACAGG 1336690 31 100.0 34 ............................... TCGTCACGGAGCCCCCACCCAACCTCAACCGGCG 1336625 31 100.0 32 ............................... CGCTGTGGCTGCCCGGACGCAACTACGAATGC 1336562 31 100.0 33 ............................... GAAGAGATCGTCTCCTATCGCGCCCACCAGCAA 1336498 31 100.0 34 ............................... TCACCCTGAGCTTGCAGAGATTGAATCGCCTGAT 1336433 31 100.0 33 ............................... AAGTAGTACATGGTTATCTCCCCTCTAAATATC 1336369 31 100.0 33 ............................... ACGGACGCACGTTCACCCAGAACGCTCGGACTG 1336305 31 100.0 33 ............................... TGTGAGTTGTCGGTAGCTGAGGGCTTGACCACG 1336241 31 100.0 34 ............................... TCTTCGGTTCGCTTGGTGAATCCTGCGAATATGG 1336176 31 100.0 34 ............................... TGGATTAGAGGCCGACTGGTCGGGTGAGACCGTG 1336111 31 96.8 33 .................A............. CTGATGAATACGTGATGATCCTATGATAACCAG 1336047 31 100.0 33 ............................... GCTGACTGGTTGGCTTCGCATTATGAGCAGGTG 1335983 31 100.0 33 ............................... ATGACAGGACTACGGGCGGCTTTCAGCTTCAAT 1335919 31 100.0 34 ............................... ACCGACGTGGTGACCATCAGCACCCGATTTACGG 1335854 31 100.0 34 ............................... TGGTTGCGATACGGGTACTATGTACAGCGATTCA 1335789 31 100.0 33 ............................... AGGAAGTACTATTTCAAACCGTTGAGACTGATA 1335725 31 100.0 33 ............................... TCCGGACTGTTCCATTCAGGAGTGGCGCTCATG 1335661 31 100.0 35 ............................... CTCGGTCTGAACGATGACGCTTTCGGCGGCGGCGG 1335595 31 100.0 33 ............................... AACAAGACCCACAAGGACGCGAAGAAAGAAACC 1335531 31 100.0 34 ............................... CCTGACCGACGTGGGCACCATCTTCGGTAGCGTC 1335466 31 96.8 34 .G............................. TGATATGGAACGGAATACTGACCATCGACATACC 1335401 31 100.0 34 ............................... TGCGACGGACATAACCACTACATCATCCAACACC 1335336 31 100.0 33 ............................... CACAAGTGGAAGCAGAAGCAGAGTCTCAAGAAG 1335272 31 96.8 35 ........T...................... ATGCGTTGCACCGCGTGGAATGACCTAGCCGAACA 1335206 31 96.8 34 ........T...................... TCCCATACCCGTAGTTGACGGCGCTGAGGAATTT 1335141 31 100.0 33 ............................... TGGCTGTGGTTGCTGGCTCGGTGTACGGCTACG 1335077 31 100.0 35 ............................... ACCGTGCCCGCGATGGCGGCGTACTCCTATAGCTG 1335011 30 71.0 0 ..T.....A.AG.A.-..TA.....G..... | ========== ====== ====== ====== =============================== ==================================== ================== 37 31 98.9 34 GTCGCTCCCTCACGGGAGCGTGGATTGAAAT # Left flank : AAAATGTGCAAAAAGTATGGCCAACGTGTGCAAAATAGTGTATTTGAGTGTTCAGTAACTCCATCGGACTATCTAGTTTTAAAGCACAACCTGCAACAATTGATAGATACGGAATCAGATAGCCTGCGGTACTACAACTTGGGAGCGAACTATTCAAACCGGATTGAGCACATTGGAGCGCAGCGGCATTTGCCAACTGATGACGTCATGATGGTGTGATTACTTTTTCGAATGAACTATGTGCAGTCGGGTTAGGAGCGAGCGGGTGTGGGCAAAGTGCTGTGCGAGAACAAAACACTCATGAATATGCCAGGGGTTCGCACCTGAGGTCACTGACCCTTCTGTAAAGAACTGTGGATTATTGGTGTGTTGCTGGTGCAGCAAGCCGCAAATGAAAATATTTCATCGCAAATGTGTATTCAAACGTCATTCTCCAAGAATGTCCCTATTGCTTAATACATTGTTAACCGCATATTGGAAGAGTAGATTCCATTTCTGCA # Right flank : CTTGACAAGAGGATAAACCGGGAATGCGCTTGCATAGTTCACTGCCGAAAGAATCAGATGAGATATCGAGAGCGTGCAGAGAATTCCCTACATTGTCATTTGCCGCGCATGCGTGGGGATGATGCAGACTGAACAGGATTGAACCGTTCAAAGCCGGAAGCACTTCCTCGACTCATCTTCCAGTCCTAAGGCTGACTGCGTGGTGCCTTTGACATCATCAATTTATTGGTTTTGGGCGAGTATGCCTAAGTGAATGAAGGATGTCATACCTGTCACCGCCTGTGTCGTGGACGATATTAACAGGTGTTGCCTTCTACCGCTGCGACACCCACCACGGCACCGACGCAAGGCGCTTCATCTCGAAGGGCGCAACGCATCAACATCGTGATGCAGAGGGTATTGTAAGGCGGGATAGCCGCGCACGATCGGGGGGTGCTTGATGAGTACATTATTTCTGTCGTCTTCGTTCGAGGACGTCGCACAGTTCTTTCCTGATGTCG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //