Array 1 114038-111058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJGI010000004.1 Legionella pneumophila strain LEG00073 LEG00073_c0004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 114037 32 100.0 36 ................................ GTATTCAAGGAAGACGACATCGTCAAACTTGGCAAT 113969 32 100.0 35 ................................ TTAAGTCTATAGGTTGGCTAGGTTTCATCTTTCCG 113902 32 100.0 35 ................................ CATCTCGCGGTGATAGGCTTTAACCCAGTCCGGGT 113835 32 100.0 35 ................................ TTTAAATCGTTTTTAATCACCTGATCATCTGTTTC 113768 32 100.0 33 ................................ AATTAAACTGGTTTCTATGTCAAAAAACAACAG 113703 32 100.0 35 ................................ ACTTTTAACGGCACAGCCGTAACCGGGATCACAGG 113636 32 100.0 36 ................................ AATGCTTTCATGGTGAACGTTGCTCTTGGCAAAGGT 113568 32 100.0 36 ................................ CCATGTGCCATTGCTATTAATGTAATCAACGATGCT 113500 32 100.0 34 ................................ ATCGCAATGATGTTGGCAGCAGTTAAAGGGACAG 113434 32 100.0 35 ................................ ATGTTCTTGTCAAACCACATTGCTATAGCACTTAC 113367 32 100.0 36 ................................ AGCGTACTCCATGAAATTCGTATAGAACCAATGCAT 113299 32 100.0 33 ................................ ATAATAATCTCACAACGTAAACCAAACTTTACT 113234 32 100.0 35 ................................ TAGTTTATCAGTAACGTCTATTCTTAGTGTATGGT 113167 32 100.0 35 ................................ ATGTATAATGATATTTGTCTGTGAGGGAAACCAAC 113100 32 100.0 34 ................................ CGGATACTTGGTATCACTTACTGCTATAAAATGG 113034 32 100.0 36 ................................ TAATACATTAATAATCTTGGCAGGGGCTTTTAGCGA 112966 32 100.0 34 ................................ TTCTTAATTCGATTGCCCATTTTTCGTGTTTAGT 112900 32 100.0 35 ................................ AATTATAAATCTAGCTTTGGATAAGGCCAAGTCGA 112833 32 100.0 35 ................................ AATGCCACAGTAAGGGCAACATGTACGCATATAGA 112766 32 100.0 34 ................................ ATGGCAATGATGTTGGCAGCAGTTAAAGGGACAG 112700 32 100.0 37 ................................ CGATTGCAGCAAGCGGTTACTTCAATGCTTTCATGGT 112631 32 100.0 34 ................................ TCAAGAAAATAGTAAATGTGATTTATATTGTAGT 112565 32 100.0 36 ................................ TTGTTTTAGGAAGTTTGAAAGGATTGTTTACAGGTG 112497 32 100.0 35 ................................ GAAACTGGATTGTTATTTAAAGCCCGTCCTGATGC 112430 32 100.0 35 ................................ CTTTGTATGGCTGATCAACATGTTTCGCTGTCGTT 112363 32 100.0 34 ................................ TTCGTAAATCTCAGGTACATTTATGTCATAGGGG 112297 32 100.0 36 ................................ AATTACAATTAGTTAGGGATAGGACTAGATTTATTG 112229 32 100.0 34 ................................ TTTATGGCCCGCCCAAGGTGTGGCTATAGGTCCT 112163 32 100.0 35 ................................ TAGTTTATCAGTAACGTCTATTCTTAGTGTATGGT 112096 32 100.0 34 ................................ TCACACCACTCACCACTATTTATATATGATTTAC 112030 32 100.0 35 ................................ ATGGCCTAGTTGGATCAGGGAATTGCTAATAATTT 111963 32 100.0 36 ................................ TTGTGTCTCTATGTGAATTAAGAATAGTTGTCTTAG 111895 32 100.0 37 ................................ GGAAAATGATGATGAAATAGCTCTTGTGATAGGGCAT 111826 32 100.0 35 ................................ ATTTTATAGGCTCAGAAAATAATGATTGGGTTGTT 111759 32 100.0 35 ................................ AAGCAAAAACAAGGGTTACAAAAAGAAGCCTTGGA 111692 32 100.0 35 ................................ ATCTAAAGAGAGGTAAAGTAATGACTATTGAAGAA 111625 32 100.0 36 ................................ TTATCTAAAGCAATAAACTCTTGACGCAATGCTGTC 111557 32 100.0 34 ................................ ATATTTCGCAAACTTATAGAATGAATGTAAAAAT 111491 32 100.0 34 ................................ CGTCGTCTAAGACATTAAAAACTAGAGTTTTCAT 111425 32 100.0 34 ................................ AGATAACTTAGATTTTACGCGTTTGTATTTAACT 111359 32 100.0 37 ................................ ATAGGTATAGAAAAAGAAGAAAAATATTTCAATATAG 111290 32 100.0 34 ................................ ATCCCAAGGTAAAATAGCTTGCACATCATCATTC 111224 32 100.0 36 ................................ TTTGAGTTTGGTGATTAGGTCGTCAATGCCAATAGG 111156 32 100.0 35 ................................ AGGAATAGCAATTGTGTCAAATAGAAAAGTAGACG 111089 32 90.6 0 ...................T.C........T. | ========== ====== ====== ====== ================================ ===================================== ================== 45 32 99.8 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : AATTTTATACTCCTTATTTAGTGAAGTAATTATGTTTGTAGTAATAACTTATGATGTTAATGTAACAACTTCTGGTGGGCAGAAACGTTTACGGAATATTGCAAAAACATGTCTTGATTATGGTTTTAGAGTGCAAAACTCTGTATTTGAATGCGAAGTTGAACCTGATCGGTTCGTTGCGTTAAAAAATACACTTTTAGAGTTATTTGATCCTGATGCTGATAGCTTACGATTTTATTTTTTAGGCAAAAAAGGGAAGGATAAAATCGAACATTTTGGAGCTAATAAGGTCATCGACCCCTTGAGAGATCCACTGATACTGTAATTCGCTAACTTGAAGTTCTCATATTTTTACCGGTCAATTATCGGATTATAACCACTTGATATTTATATTTTTTTTTATGTGTGCTTATCAAGCTAATCAATAAATATAATTTTTTATTATTATTAGCGATATTTAGCATTTTTTTCGATATATTTCAATATGCTATAATCATACT # Right flank : ACGGGTAGCATGAGTTTTTTAAGTGAACAAAAGCGTCGCGTTTAGCAAAGATAGTATGAATAAATTTTAATTAAAATGAACTTGATGTGAATTGTTACAAACATTTCATATCGATTTTAGGTATATTTAGCCAGAAGCTCTTTGTCTTTATCTTTGACTTTGATATCTTAAAGAAGAAGTTCCAGATTTTTTACAAGGATGTGAATATGTCTGACTTACAACAATTGCCTAAGACTATCCTGAGATTTTCCTGGCATTTTATAAAAAAAAGTCCCTGGCTTTATGCTTTATTTTTCATAGCACCAGTGGTGATGGTGCTTGAAACGAATGTGATTCCCTATGCTTTAAAAATGATTATTGATGGGATAACAAACCATAAAGGGGGAAAAGAAAGCATATTTCAAGACATCGCACCGGCTTTGTATTTGGGTGGAGTTGCCTGGTTTGGTGTGATTCTGGTGTTGCGCTTGCATAATTGGTGGCAAGCCTACCTTGTTCCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //