Array 1 56-328 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWNM01000032.1 Klebsiella pneumoniae strain VRCO0196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56 29 100.0 32 ............................. GTCAGATCACGTCAACCACGCTTGATTTTACC 117 29 100.0 32 ............................. CTCACTAACGCCGTTGCCTGCGATAGCTGATG 178 29 100.0 32 ............................. GTGATCGGCCCGGCAATGCGTGAGCTAATCAA 239 29 100.0 32 ............................. TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 300 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCGCGCCAGCGGGGATAAACCGTTGAGTGACAGAGAGATTGACCGCCTTGTTTTG # Right flank : | # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 187667-184774 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWNM01000002.1 Klebsiella pneumoniae strain VRCO0196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 187666 29 100.0 32 ............................. GCGATCATGCCGTAGTCTTCGATCACGTAATC 187605 29 100.0 32 ............................. TTTGCCTTCCTGTCTGCAGAGGCGCGGACAGG 187544 29 100.0 32 ............................. CGTAGCTAAAATTAACTGCATTCGGCGCACCT 187483 29 100.0 32 ............................. CCAGCTCAATTTCCGCCTGTCCCGCCAGCGCC 187422 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 187361 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 187300 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 187239 29 100.0 32 ............................. ATTAAATTTTTCGGGTAAAGAGAAATTGCGAA 187178 29 100.0 32 ............................. CTGCGAGCTACCCTGAATTTCAGCGACAGGGG 187117 29 100.0 32 ............................. TAGTGCCATATATTATCCTCTGCGGTATGACT 187056 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 186995 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 186934 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 186873 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 186812 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTACAGGTAATACGT 186751 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 186690 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 186629 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 186568 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 186507 29 100.0 32 ............................. GTTGTCAGTCAGGGAAAATCTATCCGCAGGGG 186446 29 96.6 32 .G........................... TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 186385 29 100.0 32 ............................. AACTGAATGTTCCAAATCCGGTTGGACGACCA 186324 29 100.0 32 ............................. TTCAGCAGCGCGCTCGTCCCCCTCCTGTCGGA 186263 29 100.0 32 ............................. CTCTACTACGATAACGGATCCCACGCGGGCTG 186202 29 100.0 32 ............................. GCTGCCAGCCCATTCCGTAATTGCCTGTTTCA 186141 29 100.0 32 ............................. GCGAATATAGGCATTAATGCTTTTAATAATAT 186080 29 100.0 32 ............................. CTCCGTCACCAGTTCTGTGCTATCCGGCACAA 186019 29 100.0 32 ............................. TCACGTTTGCAGAACTCGCGGAGGAAGAAGAA 185958 29 100.0 32 ............................. GATCCCCCGGAGGAGACTGATCAAACCACTCG 185897 29 96.6 32 ............................C CGCTGGTTAATGGGCTTCCCGGAAGGGTGGGC 185836 29 100.0 32 ............................. TCTATCGCAACCACCGCTGAGGCGCTGATTGA 185775 29 100.0 32 ............................. CCGCTCCACGGTGAGCGGCTGTTCAATGTAGT 185714 29 100.0 32 ............................. CATCACGCGCTGGCCAATGTGTTAAACCAAAT 185653 29 100.0 32 ............................. GGCATCATTCTCTTCGCTACTCCCGCCGATCA 185592 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 185531 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 185470 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 185409 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 185348 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 185287 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 185226 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 185165 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 185104 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 185043 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 184982 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 184921 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 184860 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 184802 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCACGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGTACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //