Array 1 44948-44654 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRAM01000013.1 Campylobacter fetus subsp. venerealis cfvi03/596 14544C00013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 44947 31 100.0 34 ............................... TAGGACGGAAATGAGATTGCTAACGTTGCTCCCG 44882 31 100.0 35 ............................... CAACAGGAGATAGTCTCTTGCCATCTTGCTTACAC 44816 31 100.0 35 ............................... AAAGGGTTCTAGCTTAGTTCGTAGGTCCCTTTATA 44750 31 100.0 35 ............................... GTCTTTGAAGACTTAGCTTACAATGTAGCTTACGG 44684 31 96.8 0 ..............................T | ========== ====== ====== ====== =============================== =================================== ================== 5 31 99.4 35 GTTTCAACACAAACATTGTCATTAGCAAACA # Left flank : CATCGAATCCC # Right flank : ATAATAAACTCATCATCTAAGTAAATTTAAAAAAGCAATTAAGATAAAAAATAAATTAAAAGATATTATCTAAAACTATTAAAAATAGATTATTTGTTATATATATAATATAGCTATAAATAATGAGAATAAATTTATTTTCCAATCTAAATTAAAAAAATAACAATAATAAGTTAAATATCATAGGAACATTAAATTTAAACTATTTATCTATGTTTTTAAAAGTTTAACTAAAATTAGGTTGGAAAAAGCTTAATGCAGTATAAAATATAAATTTGTAGTTAGTGGTATATAAATATTATTATTGCTATAAATTAAAACTAACATTAAAATTGAGTTGGGTTATATACAAAACCCCTGGTGCCCAAAGTCGGACTCGAACCGACACACGGTTTCCCGTACCAGATTTTGAGTCTAGCGTGTCTACCAATTTCACCATTTAGGCTTAGAGTAATAAATAACTATAAAATAGAAGTTGGATTATACAAAAAATTATATTA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAACATTGTCATTAGCAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 28-1103 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRAM01000019.1 Campylobacter fetus subsp. venerealis cfvi03/596 14544C00019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 28 30 100.0 34 .............................. AATCCAACTTAACAAAAATGTTATATAAATCACC 92 30 100.0 36 .............................. TAAACTATTTCGTTATCCTGGTTGATACCGCTTAAA 158 30 100.0 36 .............................. ATGAGTTTAAATTTGATAGATCTGAAAAGATTATTC 224 30 100.0 35 .............................. CTTGATACTTTTTGCTTGATTAGCTTTGCATTTTA 289 30 100.0 36 .............................. TCCCCGTTATCTACCTCTGGCGCCATGCTCTCTCCG 355 30 100.0 35 .............................. CCTTCTGCGATATATTTGATGAAAAAACAGAAAGG 420 30 100.0 36 .............................. TTTGAAGTGCACGACGCTATAACTAGAACACGGATC 486 30 100.0 35 .............................. ATTAAAGCCGAATTACTCCCATTTTTTTGACTTGG 551 30 100.0 36 .............................. TACATCTTTTATCTCCTCTTTGTATTCCTTTAGCTC 617 30 100.0 36 .............................. TGTATGTTGGTAGCTTTTATGGTTACTTTACATAAC 683 30 100.0 32 .............................. TCACCAAAAAACCAGGATTAAATAAAAGAAAA 745 30 100.0 35 .............................. AATCCAACTTAACAAAAATGTTATATAAAATCACC 810 30 100.0 36 .............................. TAAGCAAGGCTTATAAGCTCTTTACAATGCATTTTT 876 30 100.0 36 .............................. AGAACTGTTTTAACCTCACTTCCATCAATCTCTTTT 942 30 96.7 36 .........................T.... CAGTATGCCATTTGATTCTAGTTCGCCTATAGCTCT 1008 30 100.0 36 .............................. CATCCTCCTTTTAATTTATTACATTTAAACAATTTA 1074 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 17 30 99.8 35 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AGTTGAAATATATAGATAATAGGTTAAG # Right flank : CAAGAGCAAACATGGCAGAGACCTTAAAAGAGAAGTTTAAAGGCGTACTAAGTGCAAATACTAGCTATTTTGAAGGAGTGAGCGACCACATTATAAGTCAGGCTCAAAACATAGCTAGAGTAAATCAGTCTAGTAAATACGGAGTAAAGCATTACAAAGTATTAGCTAGGATAGATAGCCGTACAAGCGATATCTGTAGAAGTATGAATGGACGCATAATCCCAGCCTCGCATATAGAAACTCAAAGCAACAATATCCAAAACGCTAAAGATATAAACGAGAAAAAAGCAGCTGCTATTTGGAGAAATGAGCCTTTTTTGGGTAAAATACTCCCTAGTAACTTCGGGCTTCCACCATATCATTTTCGTTGTAGAACCGAGCTAGTACCGGTGTGGATAAATGAAGAAGAGATCGATGGAGTAAAGATGAAAAATACAAGCCCGCTTAGCAAAGATGAAGTAGTAAAGCATATAGATAAAACTGGGGTTGAGAGATATGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //