Array 1 149150-149417 **** Predicted by CRISPRDetect 2.4 *** >NZ_PREL01000001.1 Acinetobacter indicus strain IHIT32429 NODE_1_length_318968_cov_81.2785, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 149150 27 78.6 32 A.A...-C....AC.............. ATTCCGCTTTGCTGGCTGGAAATACCTGTCTA G [149153] 149210 28 96.4 32 ............A............... ATTCGCCAAAGCAAGCAGCGCCTCTTCACCAC 149270 28 100.0 32 ............................ ATTGTCACGAACTCCCCCAACAATAAGCGCAG 149330 28 100.0 32 ............................ GTTCACCAGAATTTTCAGTATGACAGGACCAG 149390 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.0 32 GTTCACTGCCATGTAGGCAGCTTAGAAA # Left flank : GTGGACACCTATTTATGGATTTAAAGACAGTTATAGACAGCACACCAACGCTAAAAAAGCCCCGTCGAACCTTCACTGCTGAATTTAAACATCAACTTATTCAGCAATGCCAGCAGCCAGATACATCGGTGGCTAAGGTCGCAATGCAACATCAGATCAATGCCAATCTGTTGCATAAATGGATTCGTCAGTCCAGATCAATGGTTCCATCATTAACAACCCCATCTAATCCACAGACCGACTTCCTTCCCGTCATTCTTTACCCGACGCCAGTCAAACAAGAAGCACCTCCGCCGCCTGTGCCAGAGAGGAAAGCTACCGCTCATATCAGGATTCCATTACATGATGAACAATGTTCCGTAAGGGATCAGATGATCGAAATCGAATGGCCGGTGGAGTCTGCAACTGAATTACTGCTTTTACTTCAGGGCTTGATCAAATGATCCGTATCGATGAAATCTGGTTGTCTACCCAGCCCATGGACATGCGTGCGGGTATGG # Right flank : ACACCCAAAATAAAACCGGAGCATCGCCCCGGTTTTATTCTTCATCTATTTATTCTTCTAACAGACTTCTTAACATCCAGGCGGTTTTTTCATGGACTTCCAATCGTTGGGTCAGTACATCCGCAGTTGGCTGGTCATTGGCTTCTTCCACCACATCAAAAATACTGCGTGCGGTCCGTGCAACTGTTTCATGGGCACGAACCAATAACTCCACCATTTCATTGGCTTTTGGCACACCTTCGACTTCTTCAATCGACGCCAGTTTTACAAATTCTTTATAGGTTCCCGGCGCCGGAAAACCCAGCGCACGAATCCGCTCGGCAATAACATCCAGTGCATTCCATTGCTCGGTATATTGGGTCATAAACATGGTGTGCAGGCTGTTAAACTGTGGCCCGGTCACGTTCCAGTGGAAATTATGGGTCATTAAATATAGGGTATAACTGTCGGCCAGAAGTCGGGAAAGCCCTTCGACAATTTTGGCCCGGTTATCTTCAGAA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : I-F [Matched known repeat from this family], // Array 1 62339-62010 **** Predicted by CRISPRDetect 2.4 *** >NZ_PREL01000014.1 Acinetobacter indicus strain IHIT32429 NODE_14_length_65628_cov_85.5063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62338 28 100.0 32 ............................ AGTTCGACAAACTGGACTTTACGCTCTGAGAT 62278 28 100.0 32 ............................ ATTGATGGGTGGAATATTGCATAGGCAATTTT 62218 28 100.0 32 ............................ TACCGTTCTATTACCGCCTGTTCCCTGCTTCA 62158 28 100.0 32 ............................ ATAAACTGCTTGAGGTCATCTAATGAGTATTC 62098 28 100.0 33 ............................ GCTATTAGTGTACGTTTAGCATCATCACTTAAT 62037 28 89.3 0 ........................CA.A | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.2 32 GTGAGTTATCGCATAGGCGATTTTTTGG # Left flank : CCGGACATAATTCAACATTTCTTGAAATTTCGGTCGGTCGGTATTTTTACCTGACGCACGATCAACAAAAATCCGGTCGACTTCAATTCCCTCAAGTTGACGTCCAGTGTTTTGCTCGACAGAACTGACCCGGACATACCCTACTTTTTGGCCTTTCACTTTTTCACGCCCCAATTGAAGAAAAATGAACAATTTCGTAAATTATAAGTTTTTAATACCAAAGTTACATGTTATATATGATTAAAAATCATTTAAATGGTACATAATTTTACGAACTTTTAGGCTGTTACTTTAGGGTATACTCCAAAGTAACGTTATATCTCTTATAAGAAATGGTTTTTTTAGGTCTCGAGTAAATTTATATAAAATCACCTAAATTTTTGATTCATACTTCAAGTTATTGAATATATATAATTTTATTTCATTAATATTTTTTTGATTATTTGCATAAAAAGACTGTAAACTACTAATTAATTACAATATATATTCTTAATATTGTT # Right flank : AAGCCCATTTTAAAAATGGGCTTTTTTGATGGTGGTTTATCGCATGATTTTGAAATTAGTTATTTAAGATTCCCTATAAACATGTCTGCTTTTAGAAAATACTCTCTAGAAAAACATCAAAATGGGTGTGATGAATTGTGCTCGATTGACTGAATGGATTTTTCTTGTACTGTCGCTATTTCTAGTATTGGAGCTTGTGATTGCACAGTCTTTATGTCTTTCTGGAAGCTACGTTCAGTAGAATCGAATCTAGAATTTAATTGATTTAAATCTGCTTCTGAGATGTGTGTTTTAAATTTTTTAGTCGCAAATTCAATCATTTGTTTATCATTACGAATGATAGCTGATATTGCTTCGACTTTCTCTTGTGTCAGGTCTTTTTCTTGCATCCGATAATTTGATAACGCATTGTATTTCTCAAACATCGCACTAACCAGTTGAGTCCCAAGAAGATCTTTCTTCTGAAAATACTTTTCTTGCATATCAGTGAACCGTCCCGG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGTTATCGCATAGGCGATTTTTTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //