Array 1 366125-367112 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045724.1 Pasteurella multocida strain PM22 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 366125 28 100.0 32 ............................ ACTTACAAGCGCATTATGACGATGAGTTATCT 366185 28 100.0 32 ............................ GTGAGCGTCCACTAATAACACACTATTTTGTT 366245 28 100.0 32 ............................ TTATCCGTCACCTTCACCATGTCGTAATGCAC 366305 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 366365 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 366425 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 366485 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 366545 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 366605 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 366665 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 366725 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 366785 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 366845 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 366905 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 366965 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 367025 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 367085 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1592546-1589819 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045724.1 Pasteurella multocida strain PM22 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1592545 28 100.0 32 ............................ TTCGAGGCGACAAAGCAGTTTCTTGAAGCAAC 1592485 28 100.0 32 ............................ AATTGAACCCATTGAAAAACATTATATAAAAA 1592425 28 100.0 32 ............................ GCGAAAGCGGGCTAATAAGAAAGGAAAAATAA 1592365 28 100.0 32 ............................ TCTAGTCATCCTCTAGTCATCCAGTAGTCATC 1592305 28 100.0 32 ............................ AGATTATAATTATATTATCAGAGTTATGCTAC 1592245 28 100.0 32 ............................ CTCTTCGATAAGGACACACATGAGATGGTGGA 1592185 28 100.0 32 ............................ TTTGAATAGGAAATATTATGGAATTCATTCAG 1592125 28 100.0 32 ............................ AGTTGTTATTTATGATAAACATTGTGTTGAAT 1592065 28 100.0 32 ............................ AATTGAACCCATTGAAAAACATTATATAAAAA 1592005 28 100.0 32 ............................ AGAGGCGCATTGACTTTATACAAAGCTGTTAG 1591945 28 100.0 32 ............................ AATTGAACCCATTGAAAAACATTATATAAAAA 1591885 28 100.0 32 ............................ TCAGTTGATTCCACTTCGATAATAAATAAGTT 1591825 28 100.0 32 ............................ TACCTCTTCTTCACTTATACACTGTAAAGCTA 1591765 28 100.0 32 ............................ TAAAGCTTTGCCGTACATTAAACAAATAGACG 1591705 28 100.0 32 ............................ TAGCTCACCCTTGAGCCGTATTTTTCTTATGT 1591645 28 100.0 32 ............................ GCAATGTGAGTCATGCTAATTTTACGATTATC 1591585 28 100.0 32 ............................ TTAGTGAGACTCTCTAATGAGTTGAGGTCTCC 1591525 28 100.0 32 ............................ AATCACCTTGATTTCAGACCCAGTGAAGATAG 1591465 28 100.0 32 ............................ ACCTAAGATTGAAGAGGGTGATAAACCATATT 1591405 28 100.0 32 ............................ CTCACAGAATCTATATCGCAGTGCAGACAAGA 1591345 28 100.0 32 ............................ CTACAACCTTGACTGGAGGGGTCGTGTGTATG 1591285 28 100.0 32 ............................ AACGTAAATGTTCACACCCTCTTGTTGTTCCT 1591225 28 100.0 32 ............................ AACGGTGGCTTACGATTAATCGCACTTAATGC 1591165 28 96.4 32 A........................... GTAACTACTGGGAAGACCAAGAGTTTAAACCT 1591105 28 100.0 32 ............................ TCATTGTTTAAGTGAATCTTTGTATCAAATTG 1591045 28 100.0 32 ............................ AGAAAACTTCGATAAGAACACACATGAACTCG 1590985 28 100.0 32 ............................ TTCTTCTTCTTATAGCTATCATTTAGTTTACT 1590925 28 100.0 32 ............................ TGTTGGTAAAAAGCTTACAGAGGTCTTGATTA 1590865 28 100.0 32 ............................ AGAACACTTCGATAAGAACACACATGAACTCG 1590805 28 100.0 32 ............................ ACAAGGCGATGACATCATGAAAGGTTGTCTTG 1590745 28 100.0 32 ............................ TTAATTTGATAGAATTCTTTGAGAGTCCAGAA 1590685 28 100.0 32 ............................ TTTAGTCATCGTTGACTTATTAGAGTACTTTG 1590625 28 100.0 32 ............................ AAAGGCTAAAGCGTTCCCGACTGTACTTAATG 1590565 28 100.0 32 ............................ ATTTAACGGCGACAACTTCGCTTCAATTTTTC 1590505 28 100.0 32 ............................ AATGTGAAAGCTAATGGTGATTCTTATTATCT 1590445 28 100.0 32 ............................ ATAAGGTACTCCCATTAATAGTCGTAGTACTT 1590385 28 100.0 32 ............................ TTATGTGTATTCTAGTTCAAGCGGTAAGCTCT 1590325 28 100.0 32 ............................ TGTCTGTTTGTCTTTCACTTCTTTAGTTACTA 1590265 28 100.0 32 ............................ AATAGTCATCGTTCATGATTGTTGACTATTAG 1590205 28 100.0 32 ............................ TCTGTCGGCTCTAACCACATGACCAAATTAAT 1590145 28 100.0 32 ............................ GCGATGAAGACGTGAAAGGTTTACTAGATACT 1590085 28 100.0 32 ............................ AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 1590025 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 1589965 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 1589905 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 1589845 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 46 28 99.3 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //