Array 1 75401-74379 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJKQ01000004.1 Campylobacter sp. P0138 ERR460789.12216_4_10.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 75400 36 100.0 30 .................................... TTAAATAGATTTTGATATTGCGCTAGAATC 75334 36 100.0 28 .................................... TTAATTTGATAAACGCCATTTTTGATTT 75270 36 100.0 30 .................................... AAGTTATTCATTTTATCGCCTTTCTGCTTC 75204 36 100.0 30 .................................... ATGATGTTATTAAGCAAGTTCAAGAGCAAG 75138 36 100.0 30 .................................... CAAATTTTTCTATATTTTTGTAGTTATCTG 75072 36 100.0 30 .................................... CTAACTCTGCTAAACTTATCAGTTTTTGGT 75006 36 100.0 30 .................................... AAGAATTATAAAATCTCTTGACAATTGTTA 74940 36 100.0 30 .................................... AAGAATTATAAAATCTCTTGACAATTGTTA 74874 36 100.0 30 .................................... TAGAGTTTTCCGCCCTAATTGTAGGCTTAA 74808 36 100.0 30 .................................... ATTAGGATATGTTCTTTGGATTGTCTCATA 74742 36 100.0 30 .................................... GAGATACTATAAATAGGCTATTCCCTAGCG 74676 36 100.0 29 .................................... TGAGCGTGGCTGAAATAGCAAAGAAATAT 74611 36 100.0 29 .................................... AAATTCCGCCACTCTAAAATCATTATCCG 74546 36 100.0 30 .................................... AAATTATTCATTTTATCGCCTTTCTGCTTC 74480 36 100.0 30 .................................... CGGTATTTCAGTATCTGGTCGCCCTATGAT 74414 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.8 30 ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC # Left flank : CGAGATTTTAATGCGTATTATGGTTATGTTTGATTTGCCAGTAGGGAGCAAAAAAGAGCGAAAAGAGGCTGCTAAATTTAGAAGTTCTCTTTTAAAATGTGGATTTTTTATGTTGCAATTTTCTGTATATGCTAGAATAGTGCGTGGATATGATAAGGCTGAGGTCATTACTAACAAGATAAAGTCTAAATTGCCTAGTAAAGGAAATGTACGAATGATTACAATCACCGAAAAGCAGTATGCAAATATGGTAGTATTAAAAGGCGAACCAAAAAACTCTACAGAGAAACTAAGCTTAGAAAAAAGCTTATTTGAATTTTGAATATTTTGCCAGGATATACCTGGCAAATGGTTACGATCTAAAAAGATCTTATTATAAGAATGCCCTTAGTTTTTATATGTTATAAGATCTGAATTATACAGTTTATTGATTTAAAATTTAATTAAGATATTAAAATTTAGATCAAAATACCATAAAATCATATCTATAAGAAGTTTCT # Right flank : TTAAATTCAAAATTGGAACACAACTTGCTTAAAGACTAGCAAATTAACGCAGGAGCGATTATGCAAAATGGATATTATCAAGCAACTGGCGCAATGGTGACTCAGTTTAACCGCTTAGATATCATTACTAATAACTTAGCTAATGTAAATACTAGCGGATATAAAAAAGATGATGTGGTAATAGCTGATTTTGAAAGAATATTTAAAGAGACAAAGGATGCTTTGCCGCTAGAAAATCACACTAAAGATTCAGCTAAATTTCTAAACCGAACATTAAATAGAGTGCCACATATCAATGAGGTTTATACTGATTTTGGCACTGGTGGGCTAAAGCATACTAATAATCCGCTAGATATATCACTTGGCAAAAATGATCTATTTTTACTAGTAGATAGTCCATCAGGTATAAGGCTGACTAAAAATGGCTCACTAAATTTAGATAGCGAAGGGTATTTAGTTACAAAAGAGGGTTATAGAGTACTGCCTAGCAACTATGCTGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 18430-19038 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJKQ01000006.1 Campylobacter sp. P0138 ERR460789.12216_4_10.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 18430 37 100.0 35 ..................................... GCTTGTCTAGCTAACCACGCTAAATACTGTAAGCC 18502 37 100.0 36 ..................................... ACTATGATTAATTGCTTAATCTCGGCTTCTAAATCA 18575 37 100.0 35 ..................................... TTTAGATTAACTTTTGAGTTCTCATCAATTTGGTA 18647 37 100.0 32 ..................................... CTAACATTAAAGCTAGTCTCTATAACTGTACG 18716 37 100.0 35 ..................................... CAAAGCTTAAAAGATGAGTTTTTAAAGCTTGATAA 18788 37 100.0 35 ..................................... AAGCCTTGCTCATAGCTCACAGAGCCATCTGCAGT 18860 37 100.0 35 ..................................... TTAGCTCTGTAAATGTAAAATATACATTATTAGCT 18932 37 100.0 34 ..................................... GAGAGTCCTGTCAAATCTTCTCCACCAGCATAAT 19003 36 89.2 0 ...........................A.C..-...T | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 98.8 35 GTTGCAAATTATACCACAAATCAACTCGGTTTGAAAC # Left flank : AAATCAAAATAAGCCAATACTAAATAAAGGCACTAAAATGCAGCTTATAGCCTACTCAAAGCTAGCTAGTAAGCATTTTAATAAACCATTTTTTAAGATAATGCTAATTTGTAGTAATAATCTTAAATTTAAGATATTTGATATAAACAGTGATGATTTAGCCCAATTTAATAGCACGATAGATAAGATTAATAAAATGTTAAATCAAGAGCTATTTCCGCAAAGCTGTGCTAGTATAGCTGCTTGTATGCAGTGTGAATTTAAAAACTACTGTGATGATAGAGAATGATACCGGGGGTGCCATATGGCAGTTGCCCCGATCTGTTAACACCTTTAGGTGATTTCAAACGCTAAAGAGTTAATCTATAGTATAATTTGCGTTTGTATTATAGCTAAATTTTTCCACAAATTCGCTATTTTTAGCATTTTTTTTCAAAGTGGAAGAATTAAGACCTTTAAACTATAGCCAAACGCCCATAAAATAGGCTAAATTTAGCTAT # Right flank : TAGGTGTCTAGTTTATAAATTAGACACCATTAAATTTATTGTAAATTAATTTAGCTTGGAATTAAAATTATTTAATGCTTTGCCAAATAGTTTGTATCATATAAATTATTGATAAAATCATCATTATTCATCATATTTATATGAAAATCTTTGGTTGTTTTAATCCCTTGTATGATTAGCTCATCAAGTGCTACTTTCATCTTGGCAATAGCTCTATTTCTATCTATATCATGGACGATTAATTTGCCTATCATACTATCATAATACGGCGGAACGCTATAACCTTCATAGACATGGCTATCCATTCTGACATTTCTACCGCCTGGGGCGACATATTTTGTGATTTTACCTGGATTTGGGGTAAAGCTTTTTGGGTCTTCGGCTGTGATTCTACACTCGATTGAGTGGCCACTTAATTTGATATCTTTTTGCTCTGGCAATCTCTCGCCTTGTGAGATTCGTATCATCCACTCTATTAAGTCTAATCCGCTACACATTTC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATTATACCACAAATCAACTCGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //