Array 1 110-2095 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDJZ010000028.1 Bifidobacterium sp. MSK23_125 GCKDDHMM_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 110 33 100.0 34 ................................. CGCTCCAAGGGGCCGTCACCGGCTACGGCCACTG 177 33 100.0 36 ................................. AGGCTTTGGCGAGATACCAGGCGGACTTGTCCGCGG 246 33 100.0 36 ................................. GTCGCGGTAGGCGACGATGAGGCGGCGGACCGTGTC 315 33 100.0 36 ................................. ACCGGCTGGAACACGCAGCCGGATGGCAGGGGCCAG 384 33 100.0 34 ................................. GGCAACCTTTGGGACGGCGCGCACTACGGCGCGT 451 33 100.0 34 ................................. CCGTACCTCCTCGACGTTGATTCTGCCTTGCCGG 518 33 100.0 35 ................................. CAATACTCGTGAATCGAAGCAAGGAAGAAATTCCA 586 33 100.0 34 ................................. GCCAACTATCGAACCATCGTCTGCAAACACTTGC 653 33 100.0 34 ................................. ACGACAAGACTGTACGGGGTTCGATTCCCCGCGA 720 33 100.0 34 ................................. TTTTCGGTCACCATGGTGTTTCTATGACGCAAGC 787 33 100.0 36 ................................. AACGCGAGGTTCGCGTACTGCAACGGGGTGCGCGGG 856 33 100.0 34 ................................. CTGGCCGGTGGGGCCGGTGTCGCCTTTGGCCCCG 923 33 100.0 35 ................................. GCCGCGAAAGGCAAGGCGAGCAAGCGGATCGGCAA 991 33 100.0 33 ................................. CCCACAGAACCGGCACGAGAGAACTCGACGAAG 1057 33 100.0 36 ................................. CGTTTGGGTGTACCTCGAATCGCATCCGGTAGGCGG 1126 33 100.0 34 ................................. CGCAAACGATTGACGAGATCGTAGACATTGGAAA 1193 33 100.0 33 ................................. GGATCGTCGGCCGTGCAGATGCTCGAATGGAGC 1259 33 100.0 34 ................................. TTACCAACCCCGGAAGCAAGGCCGACCCGACCAT 1326 33 97.0 35 ..................G.............. AGACTGTTCGGCGGTGGTGGCATCGACTGCATCCT GG [1345] 1396 33 100.0 32 ................................. TGCGTCTCCAGACCGATCGGAATGGTCTCCTG 1461 33 100.0 34 ................................. GGCGAATACAGCCCTGCCATGGAATCGTCCATGA 1528 33 100.0 34 ................................. ACGCGCGACGTGATGTACAGGTGATTCCGCAATA 1595 33 100.0 33 ................................. CGTGCAAGCACCCCCGGAACCCGGCAGTTTACA 1661 33 100.0 35 ................................. TGCCGCAGGGCGAAACGACCTATATTGCGGTGATG 1729 33 100.0 34 ................................. GATTTGATGGGCATCTCCATGTGGATGTCCATAG 1796 33 97.0 35 ....................T............ AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 1864 33 97.0 33 ...................A............. TACGCGTCAATGTACGGCAAAGGCGACGTGTAT 1930 33 100.0 33 ................................. CTTTCATCTGATTGGAACGACGCTTCCGATTCT 1996 33 100.0 34 ................................. GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG 2063 33 87.9 0 .........................G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 30 33 99.3 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : TCAAACGGACTAAAAGAAACGCCGAAACGGCCCACAAAAATTTGACAAAACACACGGGGAGCGTGGATTGAAATGTAACCACCGGCACACCACCGCAATTGACCGGCGGG # Right flank : TGCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATACCAGCTTGGTTCCACTGGTCAACATATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGTTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 145909-147313 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDJZ010000004.1 Bifidobacterium sp. MSK23_125 GCKDDHMM_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 145909 36 100.0 37 .................................... GACGATATGGCGCTCAGCGTGGCGGAGTGGGAGGCGG 145982 36 100.0 35 .................................... AAGACCGGCACCGAACGCGACTTCACCATGACCTC 146053 36 100.0 39 .................................... GCCCACCACAACGGCAACGGCGGAGGAACACGCGCCGAA 146128 36 100.0 34 .................................... AAGCCGAACTCAATCACACGCATCAAAGCGAACA 146198 36 100.0 38 .................................... GTATTCGCCGTTCGAGAGGAATGAGAGGATGCTGTCAG 146272 36 100.0 34 .................................... TCGCCATTGGAGACGCGACGCAGGATACTATCCG 146342 36 100.0 34 .................................... ACGACAAGCCGCCGCCACCGATATTCACCTGCGA 146412 36 100.0 38 .................................... GGCCGCTTCGGTGACGGGCTGGTTTTTCCACCACACGC 146486 36 100.0 34 .................................... AATCCCAGCCGCAAGGTCTGATGCCGCCTGAAAT 146556 36 100.0 35 .................................... AAACAGGTCAATCAGCGGCGCAGGGAGGAGACGAA 146627 36 100.0 36 .................................... GAGTGAACAACTCACTGTGCGAACCATCGAACCGTT 146699 36 100.0 36 .................................... CGGTTGAGCAGCCACGTGGTGATACTGCTCGCGCCA 146771 36 100.0 38 .................................... CTTGCATCCAACGCGCACAGCATTGCATACGGGTATAG 146845 36 100.0 39 .................................... ATCATCCTCACGGAAATAGTGAGCATCCTCGAGAACCTG 146920 36 100.0 36 .................................... GGCCGCGATAGTCCACGAGGCGAACGAAGGCGTTGC 146992 36 100.0 36 .................................... GCTCAAGACACTCACCGACCAGCTCAAGAAGACCGA 147064 36 100.0 36 .................................... CGCGATCGTCACCGACTGCACTGTGTTCGCACTGTC 147136 36 100.0 35 .................................... GCGACACCGAACGCCGCCGCCACAGTCGGGATGGC 147207 36 97.2 35 ...................................A AGGGCCAGCAACGTCGTGGAGATCCATCAGGAGGC 147278 36 91.7 0 ...........T.T.....................A | ========== ====== ====== ====== ==================================== ======================================= ================== 20 36 99.4 36 ATCTCCGAAGTCTCGGCTTCGGAGCTTCATTGAGGG # Left flank : ACGCACTTCAACGATGTGCGCCTGAAGAACTTCATCGAGATGCGGCACTGGGACTCACTGCCAATCGAGCGCGCGGAACTGCTCACGCAGATCGTGAGCAACCTGTTCTACGATGTGGAGCGCCGAACCAGCCTCGAATCGTACTTCAGCGGACTGACCGGCGAAGACGTGCACGCCGCAAAGGCCGTGCTGCAGGCGCGCGGGGGAGACGCGAAGCCCTACGACCAGCCGATGGACTACTGGGCCGAGGTGCTGGGTGTGGGCGATGCGCTCGCAGACGTGCCGGGCGACGCGAAGTGGCCGGAGGTGCGGCAGGGGTAGGAGCTATCCCGTGCGAGGGCTGCATCATGCAGCATAAAGCGGGGAATCTCTCGCATCAATACTTTGTAAGGATTTGTTGAGTTTGTGTAGATAAATCAGTCGTTTGTATCACGTCAATTTGTCTACCTCTCGCAAAAGCGCTTATCAGACTATGTGTATCAGTCTGTATTATGGCTACT # Right flank : AATGTACTCCGATTTTTATCTAAGCAAAAATGAAGTATGCTGAGAATAACGCAATGAAGCGAGGTGAAGGGTTGGAAGATACATTACCGATTAGTCTCATATGTGACTTTATCTTTTGTCCACGAAGGGCATGGTTAGAAATCCAAGGTGAGAAGATTGAGTCGTTACAGATGGAGCGCGGTTTTCATGACCATCGTGCAGTGGATGACGCCAACGGTGGCCGCGGGGATACTGACTATAGGGCAGTTAATGTGAATCATCAGGGGTGGGGACTGTCGGGGCGATTAGATGCGGTCCGGTTGAATGAAGACAACGGTGTGATTATCCGTGAATATAAAGCTACACCCGTGCGTAGGAGTATGGATGTGACACATGCCATGCGTATACAGCTCGCCTTGCAGGCTGCATGCATGGAGGATATGGGTTATCGAGTAGATGGGACTGAAATATTCTTTACCTCGCACCATCGGATTGTTCCTGTTGAACTAAGAAAATCCGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTCCGAAGTCTCGGCTTCGGAGCTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 26399-27841 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDJZ010000040.1 Bifidobacterium sp. MSK23_125 GCKDDHMM_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 26399 33 100.0 34 ................................. AATAACTCTCAAATCCTCAACATGATTCGCAACG 26466 33 100.0 34 ................................. CTCTGCCGTACGGCGCAGATAGATGAATTGCCAT 26533 33 100.0 36 ................................. CCGCATATCCGCCCTGCTTGGTAAACGTCGTATCAG 26602 33 100.0 34 ................................. CGCTCGGATGCGGTCGAGTACGCCATCGGTGATA 26669 33 100.0 34 ................................. ATCCCCATCGAGTCCGAACGCGACAAGAACAACG 26736 33 100.0 33 ................................. AAGAGCATCGCGCATCTGACAGACGACGGCAAC 26802 33 100.0 34 ................................. AATATCCGCGGTCACTTCTACAGTTTCCGTGCGC 26869 33 100.0 35 ................................. ACCGTGGATAAGCCCAAGTCGGCCAACAGTCTGGC 26937 33 100.0 35 ................................. CTACAGTCAACAGTCCGCTGACTGGGCGTACCAAA 27005 33 100.0 34 ................................. ATCGTAAATCGGATAATAGTCTTCGCTCAGATGC 27072 33 100.0 36 ................................. ACGTGAAACACAACAGCAGTGGTTTGAGAAGATGGA 27141 33 100.0 36 ................................. AGCATGATATTACGTTCGGCAGTTGCTATGTGACGC 27210 33 100.0 33 ................................. TGGACGTGCGCAACATCACGCGCGACGATGGGC 27276 33 100.0 33 ................................. AACTTGTCCAACGGCATCATGGGCGTGCTGGTC 27342 33 100.0 34 ................................. GGTCTACGGCTACATGGCCGTGGCGGCCACGCAC 27409 33 100.0 34 ................................. CAAGGGTCCGCACTTCCATGGTTCTACTCCCAAG 27476 33 100.0 33 ................................. AAGGTACTCGCGGAAACGCAGGGCGTGGCCCTG 27542 33 100.0 33 ................................. AAGGTACTCGCGGAAACGCAGGGCGTGGCCCTG 27608 33 100.0 33 ................................. GTCAACGAATGGTACGCGAAGGCATGCGACGAG 27674 33 100.0 33 ................................. CGCGCCGGGATGCTGCCGATCCTCGTGGGCGTG 27740 33 100.0 35 ................................. TTTTGTTGCTGGAATTATAAACACATTCTAGTGGG 27808 33 78.8 0 ....................T..CTG..C..TA | T [27827] ========== ====== ====== ====== ================================= ==================================== ================== 22 33 99.0 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAATGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : GAAAGTGGGCCGTGTGAGCGTGTGGAAAGTCTCCAGATGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //