Array 1 49796-44906 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFCA01000057.1 Acinetobacter baumannii strain JX214 16-JX214_1_(paired)_trimmed_(paired)_contig_58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49795 29 100.0 31 ............................. GTCTTAGCAAGAATGCTAGATTGGCCTCGTG 49735 29 100.0 31 ............................. CCCTTTAATCGCAACCATGACAAGTAGATAA 49675 29 100.0 31 ............................. TCAATTTGAAGCCCCTCGATGTCAGCAAAGA 49615 29 100.0 31 ............................. TATGAGTCGGTGCCAACACACTACACTGGTA 49555 29 96.6 31 ............................C TTCTGAATCGACTGAAAAAAAGCTCGATTCA 49495 29 96.6 31 ............................C AAGCAAACCTTTCGATAGATTGCATTAAATT 49435 29 100.0 31 ............................. GAAACATAAAACCGTCTTTGGTCATTTCATA 49375 29 100.0 31 ............................. GTAGGACAAGGCAAATTATTGATTAGATGAT 49315 29 100.0 31 ............................. CCACCACCACCGCCACCTAGCAATGATCCTC 49255 29 96.6 31 ............................T GAAGTCATTACAAGAGATGACGATCTGATCG 49195 29 96.6 31 ............................T TCATCAAAGTAAATAGGTATAGGCCATCCTG 49135 29 96.6 31 ............................T ATGTCTGACCAACTGTATGAGATATTGAAAG 49075 29 96.6 32 ............................C AAAGTCGGTGTGGCAAAAGCAATTGGGATTAG 49014 29 96.6 31 ............................G TAAGCCTTCATCACCACAGCCATTTGTTCAT 48954 29 96.6 31 ............................T TAAAGCTGTTATTAGTTGCAGCACGTTTTTC 48894 29 96.6 31 ............................T GGTGATAGCGGTGGTACTACAGGAGAGCCAC 48834 29 100.0 31 ............................. GTCTGCATAAATTAGTTGTTAGTCACCCAAA 48774 29 100.0 31 ............................. TTCCGTAATAGTCAACGAATAGCCGAATGAT 48714 29 100.0 31 ............................. CCAAACCACCTAAAACGAGTCCACCAATGGC 48654 29 96.6 31 ............................T TGCACTGTATTGGGTACGCTAACAGGCTGAC 48594 29 100.0 31 ............................. CTTCTCACCATCTGTGAGTTCGGCCGGATCA 48534 29 100.0 31 ............................. CTTGCTATCAGTAAACGAGGATTAGGTCTTG 48474 29 100.0 31 ............................. CAGGGAAATCCGACTGGTGGTCAATCCATAT 48414 29 100.0 31 ............................. AATGGGATTTTGGTTTACAACAAGAAGTTCC 48354 29 100.0 31 ............................. TAAATTGAGATTTGCCATTACGTGGTTGACC 48294 29 100.0 31 ............................. TAGTTTGAATGTGTTTGGCAGACCCGCGCAT 48234 29 96.6 31 ............................C TAATAAAGAGGTTTTTAACTGGTATGAATCG 48174 29 96.6 31 ............................T AAGAAAGCCCCTTTATTGGGGCTTTATCAAT 48114 29 96.6 31 ............................G ACTAAATTGTCATAGTGGAAAGTTCCTTTAG 48054 29 96.6 31 ............................T ATCGCTGGATAACCATTACGCCTTAAATAAG 47994 29 100.0 31 ............................. TGAGCGTGTACGAAGTTTGCCTTCGATATAG 47934 29 100.0 31 ............................. ATCCACACTTGTCTGAATTTGGTCCATTTCT 47874 29 96.6 31 ............................T CCTTGACAGAAAATAGTAGGCACATCAACAT 47814 29 96.6 31 ............................T CATTAATACCTTTGCCAATTACTTGTGCTCC 47754 29 100.0 31 ............................. TGCAAAACCATCGGCCAGACGGTAAAACGGT 47694 29 96.6 31 ............................T TGCGGGGCTTCTCTTAACAATCAATATCAGC 47634 29 96.6 31 ............................T ACGCACCCGAATTATAATTTATATGGGGATG 47574 29 96.6 31 ............................T TGATGCTGGGAAATGGTCAGTATATCAAGGT 47514 29 100.0 31 ............................. AAGATGTCAGGAATACGTCCATTTAATCTAG 47454 29 100.0 31 ............................. TTCCTTTATTTTCTTTAAACTCACTCATGGC 47394 29 96.6 31 ............................T TCACACCGTTGTAGTAGAAACCTGTTTTCAC 47334 29 100.0 31 ............................. AAAGTACAGGCATAAGAGAAGAACCGTAAGC 47274 29 96.6 31 ............................T TGAAGCTGCAAAGTTTAAGAAGTTGGGCGTG 47214 29 96.6 31 ............................T AATTCTTCAGCAAGCTTACCCTGCCACATAG 47154 29 96.6 31 ............................G GGTACGTTCAACGGTAAGCAGATTTGTGTAA 47094 29 100.0 31 ............................. TAACAATCTCCAAGGGTTAAAAACCCATTAG 47034 29 96.6 31 ............................C CAAGAACGTTTGGCAGCAAAAGGAACATTAC 46974 29 96.6 31 ............................T ACAGAGCAAGGTGTTTTAGTTTCGTTGTTGT 46914 29 96.6 31 ............................T TCTGAAATTGCTCAGAAAGAAATAAGCAACA 46854 29 96.6 31 ............................T TTAGGGTTTATTACTGGTGTGGTTCTCTCAC 46794 29 96.6 31 ............................T GTAGTTGGTGTTGATGGTTGGGCACGAATTA 46734 29 100.0 31 ............................. ATGATGCAGTTGCAGGATCAACTTGCAAACC 46674 29 100.0 31 ............................. AATTATTTTCTTCAAATGGGTTATGAGTGTC 46614 29 100.0 31 ............................. CTCCCCGACCTTGCCAAGTGTCTCTTGTTGA 46554 29 100.0 31 ............................. GTGGGCTTTTTGGCGTTCCTCATTGAACATA 46494 29 96.6 31 ............................T TTAATGCGCCAAAAATCGGGTCAAACGCTAC 46434 29 96.6 31 ............................T GAGCAGGTCGATTATTCTGAACCTGAAAATA 46374 29 100.0 31 ............................. TCAGAACCACCAGTCCCAGAAGATGAAGAAC 46314 29 96.6 31 ............................T TGTACAAGTTGACTTCCTCCAACAGTATTGT 46254 29 96.6 31 ............................C GTTAGCGTCAGGTTGAGATAATTGGCTACAA 46194 29 100.0 31 ............................. CTATATTGGGCGGGGGTTTTTGGTTGGTTTG 46134 29 96.6 31 ............................C TATGAGCCATGGTTCTTCAAATTCATTGCCT 46074 29 100.0 31 ............................. AGTCCAGAAAATAAAGATTCTTTATTACTAA 46014 29 100.0 31 ............................. ACAGAGGTTCAAAATCACCTAATTCCGTTAG 45954 29 96.6 31 ............................C TTAGAAATATTATTTATTTATCAAGAAGTCC 45894 29 96.6 31 ............................T GTTTCAGTGCTGCTACTGTCTTGCTCATATA 45834 29 100.0 31 ............................. ATAGGAATGAGAGCATCGGCACACCAAACAA 45774 29 96.6 31 ............................T TCGCCATTGAGCCAATTATATAGCTTCGGGA 45714 29 96.6 31 ............................T GTCAGGTCTTAAAGTGCATCTGTCAAGTAGT 45654 29 100.0 31 ............................. TACCCGTATAGTGAGTTGGCACAGATTCATA 45594 29 100.0 31 ............................. TCAGCAGTACCACCATCAGTTCGCCATGAAC 45534 29 96.6 31 ............................C GGTTCAACACAACAAGTTCTTGAAGCTGATC 45474 29 96.6 31 ............................T TTCTGCAGGCGAAAAAAAAGCGACCCGAAGG 45414 29 96.6 31 ............................T TCTGGTCCCTGGTAGTAAAGCCCCCAACAAC 45354 29 100.0 31 ............................. GATTGAGCAAGAAGTCATTGATCGCCAGAAC 45294 29 100.0 31 ............................. ATACCCAAAACATCACTACAAACACGAATGA 45234 29 96.6 31 ............................T AGGAGAACATGAAGCTGCTCAATATAAAACA 45174 29 96.6 31 ............................T TACTTGCGGTGGCCTCAACTACAGCTGCTCA 45114 29 100.0 31 ............................. ATACGTGCGATTCAGCGAAGTACTGACAAGC 45054 29 96.6 31 ............................T TGAATCGTGGAAAGTAATAACACCATGTAAA 44994 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTGTTG 44934 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 82 29 98.0 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGGGATGAAGGAAAAAATTCTCACGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAATAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 54886-57614 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFCA01000057.1 Acinetobacter baumannii strain JX214 16-JX214_1_(paired)_trimmed_(paired)_contig_58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54886 28 100.0 32 ............................ ATCCAATTGCTTTTAATAAAATAGGATCCGTA 54946 28 100.0 32 ............................ AGCAGTTGCTGCCGTTGTAGTTGGAATTATTG 55006 28 100.0 32 ............................ ACTGTTGTCGCCCAAGTGTTAAATGTAGTACC 55066 28 100.0 32 ............................ AGATACTCGTCCAAATGAGCCGGGTGTATTTG 55126 28 100.0 32 ............................ AATGTAAGGGCATAACAGCAAGTGAGTATTTA 55186 28 100.0 32 ............................ AATCAGGGTTTAATGGCTCTAAATATCGATTG 55246 28 100.0 32 ............................ ACTTGCTATCAGTAAACGAGGATTAGGTCTTG 55306 28 100.0 32 ............................ AATTACATGTATGCAATAATACTTATTTACAT 55366 28 100.0 32 ............................ CCAACCACTTCGCTTATGTGCATGATCATCAC 55426 28 100.0 32 ............................ TAATAAACCTTATGATGTTGATGTAACTCAGA 55486 28 100.0 32 ............................ AATAATCGAAGTGTCTAGACTACGCCTTGAGA 55546 28 100.0 32 ............................ CTTATGTGGGGTTTGGGGCGAAGCTCCATATC 55606 28 100.0 32 ............................ TTGTGATGGGATTCAATGGTGAAAAAGCAGAT 55666 28 96.4 32 .C.......................... AGAAAAAGCGTATATCGATGCTCAGTCAGGCA 55726 28 100.0 32 ............................ TGATCGGTGTAGTTCGTGTGACTAACTCGACA 55786 28 100.0 32 ............................ AATAGGACGCCCATTTTCACGCATCACCAGAC 55846 28 100.0 32 ............................ TTAAAGCCCCAAGAGAAAGTTTATCGCATTTT 55906 28 100.0 32 ............................ ACTAGGCGATGACAAAGGGATTGAACTCTATA 55966 28 96.4 32 .......................G.... AAAGCCACCAAATGCGCGGATCTTCTGTTAAT 56026 28 100.0 32 ............................ ATGAGAGGTCAAACTGTGAAATTGATTAATGA 56086 28 100.0 32 ............................ TCTCGTGGTGTTGAGTTAGGGTCATAATTAGG 56146 28 100.0 32 ............................ TTGACGTACATTAACGATGTTCCGGTCTAAGT 56206 28 100.0 32 ............................ TAGCAAGGCAACGTAAATAAACTAACTTTTAT 56266 28 100.0 32 ............................ TTTACGTGTCATATCATCAGCCACAACATCAA 56326 28 100.0 32 ............................ ACTGCCGTGCCGGTTTCTGATTTGATGGAAAG 56386 28 100.0 32 ............................ AACTGTCGCTTTTAAAATAGCGAATGTGCGTT 56446 28 100.0 32 ............................ TTGATGAAGAAGAGGTAGAGAAGACAGGTTCT 56506 28 100.0 32 ............................ TTAATTACACGCAAAACCCATCACTTGTAAAA 56566 28 100.0 32 ............................ TAAGCGGTTATTGTTTCGAATTCTGAAAGTGA 56626 28 100.0 32 ............................ TGAAGACACTCCTTTATGACACTACGTTACAT 56686 28 100.0 32 ............................ AAGCACAGAACGCCGAAGAATATCAACTCGTA 56746 28 100.0 32 ............................ ATTGAAGGGCGCGCACCGATAATGACTAGATC 56806 28 100.0 32 ............................ TAGCATCAGCTAATGATACTGACGGGTACTCA 56866 28 100.0 32 ............................ TGCAATTGGGCAGTTTGCGCCCGGCTCTATCG 56926 28 100.0 32 ............................ ATTAAAAGCATAGTAGCGTAGGTGTGCCTTGC 56986 28 100.0 32 ............................ AAGTAACCAATGATGCAATTTTTTTATCCTCA 57046 28 100.0 32 ............................ TTTGAGCCTCTTTGAATGTGGTCATTGGATGC 57106 28 100.0 32 ............................ TTTGACTCCAGATGGGCAGCCTGCGCCATTCG 57166 28 100.0 32 ............................ TACGGCTGCACAAGTTGCAAAAATGATTGTAA 57226 28 100.0 33 ............................ CAAAAAAAAGAGCCTCAAGGCTCAGGTAATTAC 57287 28 100.0 32 ............................ TTTGACTACAAAAAACCGTCTCTTTGATGTAA 57347 28 100.0 32 ............................ TAGCGCCGATTGGCTTGCTGTACCAACTGTAC 57407 28 100.0 32 ............................ AGTCATAGGTGCACTAGCTGCTGGTGCATCAT 57467 28 100.0 32 ............................ TCTTCATCTGTTACATATGAAGCAAGGATCTT 57527 28 96.4 32 ...A........................ GTCAAACGACAGGGCTACAAACACTTAATCTT 57587 28 96.4 0 ...A........................ | ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.7 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAATCTTCATTTAATAAAGTTCGAGCACTAAGATAGGGTAAATCAAGTGCTTGTTGCTTACGTAATCGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGCACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGTTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : ACATTCAAAGAGGCTCATGGGACTGTTCTAAATTTTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 64126-70039 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFCA01000006.1 Acinetobacter baumannii strain JX214 16-JX214_1_(paired)_trimmed_(paired)_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 64126 30 96.7 30 .............................G AAAATGGTATGAATAAAGGCGTACCACAGC 64186 30 96.7 30 ............................A. TGGGGTATATCTGGCCTAGGGTCTGGATAT 64246 30 100.0 30 .............................. TATGCGCCTTCATCCAGACTTTAAGCGGCG 64306 30 100.0 30 .............................. GCAAGATTGCTGACATATCAGTCTTAATAC 64366 30 93.3 29 ............................AC AAGTGGCTCAGTAGAATTCCCAAAGAAAT A [64391] 64426 30 100.0 30 .............................. TTTTAGGGTTCCATTTAATTTTATTTTTAT 64486 30 100.0 30 .............................. TCAAGAGCTATTAGAGAGACATGGTTAAAA 64546 30 93.3 30 ............................AA TGAATCAACAAAAACGCATTTTAATGGATG 64606 30 96.7 29 .............................C CAAACCATTAGACGATTATGATAAAGCTC A [64631] 64666 30 100.0 29 .............................. AAATCCAGATTTCCCAACTATTCGCTCAG A [64691] 64726 30 100.0 29 .............................. ATCGCTTTCATTTTAAAGACGAATATCAA A [64751] 64786 30 100.0 30 .............................. CATGAACTAATTTAAAAGCAACATTAGTAA 64846 30 96.7 30 ............................G. GCCTGTAGCAAAAGCAAAAGATTTAGCATT 64906 30 96.7 31 ............................G. AGCAGTAACCAAAAAAAACCGTTCAGGGGAA 64967 30 100.0 30 .............................. CTTAGCTGATCTGCGGATAGTTGCCACAGT 65027 30 93.3 30 ............................AG TTATAGGCATAGAGTGCATGGGGCATGTTG 65087 30 96.7 29 .............................A AGGAAAGGGTAGGCGTTCAGACCGTAAAG A [65112] 65147 30 96.7 30 ............................G. ATGAAACTAAAAGCTATGCTCAATTAAAGA 65207 30 93.3 30 ............................AA GATCAGGGGCAACGAAAACAAGGATACCCG 65267 30 100.0 30 .............................. TACCCGATGCAGGCTGACCGCCAGTAATGA 65327 30 100.0 30 .............................. TCTTAGCAAATAAACTTGCGTAAGTTCCGT 65387 30 93.3 30 ............................AG TAAAGAACAACTTTCTTTAGAGTTGCCTAT 65447 30 100.0 30 .............................. AACTGAACTTTGCTATCAAAAAGTTTTAGT 65507 30 100.0 30 .............................. TAACTTTCAGGTCTGCCAACTCTGCTTTTC 65567 30 96.7 30 .............................A ACCCGATTAATCCCTATGACTGGCGAAAGA 65627 30 93.3 30 ............................AG TACGCAAAGCTTTAAATCATGGTTTGGTAA 65687 30 100.0 30 .............................. AATACTTCAATTGCACCGAAAGCTTTTTCA 65747 30 93.3 30 ............................AC TAAGCGTTCCATCTCGTACCGCAACTTAGC 65807 30 93.3 30 ............................AG ACGAAGGACATTTAGTCGGAGGATCAGGAA 65867 30 96.7 31 .............................G AAAGAAGGTCCTGACAAGTTAGAAAATGAGA 65928 30 100.0 30 .............................. GTAGTTCATCTGCCTAGCTCCACCATGTTC 65988 30 93.3 30 ............................CA ACATACCACTACATAAGCCCTTGTATATAT 66048 30 100.0 30 .............................. TGATTTACACAGCGGGCTGATGCGGTTTTC 66108 30 93.3 30 ............................AG TTATTAATATCTTTGCGTGCAAGATTACGC 66168 30 93.3 30 ............................GA AACGACATTCAGTTCTATCCCTTTTAATTC 66228 30 93.3 30 ............................AA ATGGTGGTTCATTGTGTCAGTTCTCTATAG 66288 30 100.0 30 .............................. TTATCGATGCGGAGACAAAACCATGCGCGG 66348 30 96.7 30 .............................G GAATGAACTTGATGTACAAGATCGTGAATT 66408 30 100.0 30 .............................. TTGCGTCATATCACGTTGAAGTTGATGAAA 66468 30 96.7 30 .............................G TCATGGCAATCGCGATACTTAAGTTGTTTT 66528 30 93.3 30 ............................AA TAACTCAGGCTTTAAGTCATTAGCCATATT 66588 30 96.7 29 .............................C TTCCATAAGTTTACGGCAATCAGATTGGC A [66613] 66648 30 100.0 30 .............................. GTTATTCATATTTTTGTAGCTGGTGCAATA 66708 30 96.7 29 .............................C AAAGTGCAGAGATGAAGAAGTATTTTTAC A [66733] 66768 30 93.3 30 ............................AC CAAACGCTTTAGCCTTGATATGGTCAACGT 66828 30 96.7 30 .............................A CGCGATCCGACAAAAAGAAATGCTGAATTA 66888 30 93.3 30 ............................GA GCCAAAAATGTTATGACCCTGCATAATCTT 66948 30 96.7 30 .............................G CTCCAGACGATTGGCGTGATACTCCGGATG 67008 30 93.3 30 ............................AA TCGTCTGGAGCAGGTTCAACTTCAGGTATT 67068 30 100.0 30 .............................. AGCAAAGCGTGATTCAGGTTCTTGATACCA 67128 30 100.0 30 .............................. TGGATTGTTTAAAAAACCTAAATGAGTTAT 67188 30 93.3 31 ............................CG CGAAAACAAGAACAGTTACTAAGATTGCTAT 67249 30 100.0 30 .............................. GATCAATCAACTTCTTACAGTCTGATTGGC 67309 30 93.3 30 ............................AG ACGTATATATGGACGTTCTGCAAAGTCTTT 67369 30 96.7 30 .............................A ACGGAATCAAAATTGCAGCAGCAGCTACAG 67429 30 93.3 30 ............................AG AAACGGGCAGAAGTTTCAGGACCTGTGGAA 67489 30 100.0 30 .............................. AAAAATGTAAATAAACTGATGGCTGGCTTA 67549 30 96.7 30 ............................C. TGTCGCTTCACGCGCACCTGTGCCCTGTAT 67609 30 96.7 30 .............................G CTTCAGCAGCGCAGACTCTCAGGAACTGAT 67669 30 93.3 30 ............................CA TTGGTGGCAATTGATCTTTTAAGCTGATCA 67729 30 96.7 30 ............................A. TCTAACAAGTGAATATAAAGAACTCACAAA 67789 30 96.7 30 .............................G AGCTGTGCATTTACGTTCAAACTGATAATT 67849 30 100.0 30 .............................. TAAGAACAATTCCAACAAGAGACAGATTTG 67909 30 93.3 30 ............................AC AAAATCCAATCGATCACGACGGCTTTTCAA 67969 30 96.7 29 .............................G AAGGTCGTACTTATCCTTATGTTGAACTT A [67994] 68029 30 100.0 31 .............................. ACAAAATTTAAGCAACTTTTGCTTATCTTCA 68090 30 100.0 30 .............................. GTTGTCATGCAAGTTCTGCAAAAATGCCTT 68150 30 96.7 30 .............................A CGTTTTATAGACATTTATCTGAACTTTGCG 68210 30 93.3 30 ............................AA TGTATGTTTATTTTGATGCAGGCGGTAAAA 68270 30 93.3 30 ............................AA CGAGAAATTGGAACTACAAAAGAACCAAAA 68330 30 96.7 30 ............................C. ACAAGTTACCCTTAGAAGATGAGGGTAAAA 68390 30 96.7 30 .............................G AAGAATTTGCAGGCCGTAGATTAACTAAAA 68450 30 93.3 30 ............................AA GAAATATTTGGAAGTTGCAAAATATTAAAA 68510 30 100.0 30 .............................. TCTTTTGTAAGTCAGTTTTAACTTTATCTA 68570 30 100.0 30 .............................. CAAACCTTTTATTGATGAAATGCAACAAAA 68630 30 96.7 30 .............................G ATCCGCCTCTTGAATGTCCAGATATTGGCT 68690 30 93.3 30 ............................AC CACCTGCATGACGATCTACATCGGCATACA 68750 30 100.0 30 .............................. CTTGAGCCATTGTGCGGCTACCTTGTCGCA 68810 30 96.7 30 .............................A CCCAAAGAAAAACGGGTAATCAAACGGGTA 68870 30 93.3 30 ............................AA TTTGGAGAACTCCGCAGAAAACAAACTCTA 68930 30 96.7 30 .............................C CGCTTGTCTGTCTCTAACTTCCTGCGCTAT 68990 30 93.3 30 ............................AG ACTGAAATTGTTGTGAAGCGTTACCAACGT 69050 30 96.7 30 .............................A AACGTTCAAAAGCTAAAACAACAGCTGAAG 69110 30 96.7 30 .............................A CAAACACAGCTTTAGCAGCAACAGAGTTAC 69170 30 96.7 30 ............................G. TGGCAGTAAATCGCATGACATTGCGTTATG 69230 30 93.3 29 ............................GC AAATGGCAACCAACTACCTGCTTCATCAT A [69255] 69290 30 93.3 30 ............................AG ATGTTGAATTGTATAACATGGATGCGTTTA 69350 30 93.3 30 ............................AC TTTGGAATTCGTTTATGCAATTCGCGCATT 69410 30 93.3 30 ............................CG CAAGGGGCTTTTTAGTGCCTAGCTGCTCGA 69470 30 100.0 30 .............................. CGGCACCACCCAGAGTAACTTTACCTTTAG 69530 30 96.7 30 .............................C AAACTCACTTCTTAACTTATTCAAATCTGT 69590 30 93.3 30 ............................CA CGCGAAGTACATCCCCAAGCATCAAGCTCA 69650 30 93.3 30 ............................AC AGGAAGTTAAGGACATTGAACAGGCAATGG 69710 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 69770 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 69830 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 69890 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 69950 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 70010 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 99 30 95.9 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATT # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTCTATGCAACTGCCACTAAA # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //