Array 1 1565414-1565141 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045850.1 Streptomyces clavuligerus strain ATCC 27064 isolate Leon-isolate plasmid pSCL4, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1565413 29 96.6 32 ............................G TCGTTTTCGGTTCCTTGCTGGCTTCCCTTGCC 1565352 29 96.6 32 ............................A GAAGGGCCTCTTCGCTATCGCCCTGTTGCTGT 1565291 29 100.0 32 ............................. CCTCCGGGACTGACAAGGGACCCGGGACCCTC 1565230 29 93.1 31 .....................G.....G. GTCCTCTTTGGAGCGGCCTGGCTGGCCGCGT C [1565204] 1565169 29 89.7 0 ........T.....T......G....... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 ATCCGCCCCGCCCGCGCGGGGATCGTCCC # Left flank : GGACACAGGTGTTCCTTTCACGAGGTAGGGCCTGTGATCGCGCCGCCCGGAGGGTCAGAGTTTCGGGCGGCGCACCTCCATGTTCAGGGGCATCCTGCAGTCCCACACCCACCACCAACACGACCCCCGTACAGGCGAGTTGATGACGGATGGGCAGCACAGGAGCACAGTCAGAAGCACGGACGGTGCGGGTGAGTACGACTGTCCCCGTGGCTCTCGGGGGCAGCAGCCGACCCTGGAGCACGGCGGCCGACGGCCGGGCCGCGGGCGTTCACACCGAGGCGGCGCAGGGACCTGTTCAGAACCCGGTACAGGGCATGCCAGGCCCAGCCAGACATCCGGAGATCCGTGCACGGGCGGCTTCCTTCCGGAACACCCCCCGCACTGGTCATGCCGACGGATACCGTGCACCTACCCAGACTGGACGACACAAAGGCCGGCCCGGAATGCAGGTAAACGAAAACAGCATGATCACCTGACAACACCCCAGGTCACGAAGT # Right flank : CGGGGTCGCCATGTCGGTCTGGACCTTCGCCCTGTCTGCCCGCGCCCGCGCGGGGCTCCGCTCTGGGTCCAGCGGGTCGGTGACCACATCAAAGCCACCGACCGCGGACGGCGGTGTCCGGATCATCCGCACCGGGAGTCAATGCCGCGGCACTCCTCCGCCACGGCCGCCAGGCGCAGCACCTCAAGGGCCACGGACCCGACCCCGGACAGGCCGAGCGTGAGGCGACGGTGCCGAACCCCGAGTTCCAGGCCGCCCGAGCAACATTCACCGCCCGCGAAAAGCCAGACTGCCGGACTCGATCTTGTCGAGCACCCGACTGTCGAGGAAGCGCCCGAGGACCTGTGGGACCGGGCGGCCGTACGCGCCGACGCCCACGCCGATCCGGCACTCGTCCGCAGCTGCGCGCAGCTCGCCGGGCACGACCAGGCCGTCGCCCTCTGCGGAACCACCGCCACCCGCATCCTCCACGCCGCCCTCGAAGACCACCGGGCAGACAT # Questionable array : NO Score: 3.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCCCCGCCCGCGCGGGGATCGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCCCGCGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1566833-1567043 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045850.1 Streptomyces clavuligerus strain ATCC 27064 isolate Leon-isolate plasmid pSCL4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1566833 28 85.7 33 ..............T.T.......G..T GTCGTGCTCGGGCTCGCTCACCGGGTCTCCTTG 1566894 28 100.0 33 ............................ CGAACCCCGGTGTCTCGACGGTTGCCTGGAGCA 1566955 28 100.0 33 ............................ ATCCCCAGACAGATCCGCTCGGACTCGCCCAGC 1567016 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 96.4 33 GAGCGACCCCCGCGCGGGCGGGGCAGAC # Left flank : GGATATCGAGGAGGCGGTCGCTCGGGACGATGAGGCGGCCGGGGTGTTCCGGCGGGGACGGACCCGACCGCGGCGCTCTCGGCACGGCCAGCGGGTCGGCGGGCCAGAACCAGCCCCAGTCCGGGTCCGGGGACCGGCGGCCGACCGTCGGCGGGTTTGTGCCGGTCTTCAACCCGGGCCCGGCCGAGCGCCGTACTCCCCCGCCGGTCGAGGCCGGTGTCGTCGACGACGTCCAGGACGAGGAGGAGCGGGACTGGCTCGAACCCCACGACGACCCCGCCCAGCAGTTCCACCGTCTCGTCCGGCACCTGGCCGCCGACGGTGACCAGCGCGCGGCGGCGGCCGGCCGGAAGGCCCGGCGGACGCTGGCGGAGATGGCCCCCGGCCATGTCCTCCAGCCCCTCCTCACCCCCACCCCCACCTCCACCAGTCGTGGGGGTGCCCGATGACCGCGGCCCGCCCGCCGCCCGCCGTAGCTCTTTGAACGGCACGGGACACGG # Right flank : CACTTCGTGACCTGCGGCGTTGTCAGGTGATCATGCTGTTTTCGTTTACCTGCATTCGCGGCTGGTCCTTGTGTGGTGCGGTCTGGGTAGGTGCACGGTATCTGCCGGAGTGACCGTCGCGGGGGGTGTCTCTATGTCCTTCGTCAAGGATGTGGTGCCGGGTGTATAGGTGTTTGTGGTGGTTATGCGGCGAGGGCGGCGGTGGGGGTTCGGGACTCGTAGAAGGTTCCGTCGCGGAGCATGGCGAACAGGACGCTGACGCGCTGGCGGGCGAGGCGGAGGAGTGCCTGTGTGGTGCTCCTGCTTCTGGTGCGGGCCGGGTGGAGTGGTTTCGTGGTGAGTGTGAGCCGTACGCGGCCTGGAAGGCCCGTACGCCCGTACTGCTGCAGGTCTGCCGGTCGTGTCCTGCGCGGGCGGCGTGCTGCGGGCTCGCGCTGCGGGACCTGGAGGGGATGGACCTGAACCGGGGTGAGGACGACATGGTCCGCGGCGGTCTGCTG # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGCGACCCCCGCGCGGGCGGGGCAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 3 1577779-1578018 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045850.1 Streptomyces clavuligerus strain ATCC 27064 isolate Leon-isolate plasmid pSCL4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================ ================== 1577779 27 89.3 60 A.....-..............A...... TGGCTGGTGGAGTCCCCGTCGACGACGTGGACCGAGCTACCGCCGCGCCCCACCCAAAAA G,T,C [1577781,1577783,1577785] 1577869 28 100.0 33 ............................ CTCCGGGGGCGGAGGGAGATGGAGCGGATCCGG 1577930 28 100.0 33 ............................ CTGGAGCAGGCCGCCCGTACCGACGTCGGCGTC 1577991 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================ ================== 4 28 97.3 42 GGACGACCCCCGCGCGGGCGGGGCGGAT # Left flank : GGCTCGGGCTGCGGTGGAGTCGGCCGGGTCCGCTGCCGGTTCAGTGGAACCCCGCCTGGCCGGGGATGCCCGCGCGGTGGTCTTCGAGGGCGGCGTGGAGGATGCGAGCGGCTCGGGTTCCGTAGAGAGCGACCGCCTGGTCGTGGCCCGCGTGGCGGGCGTAGGCGAGGACGAGGCCAGGGTCGGTCTCGGCGTCGGCGCGCACGGCCGCCCGGTCCCAGGCGTCCTCGGGCGCGGTGTCGACGGTGGGGTATTCGACGAGGTCGAGGTCAGTGTTCTGGTTTTCGCGGGCGGTGAGGGCTGCCCGTGCGGCCTGGAACTCGGGGTTCGGCACGGTCGCCTCACGCTCGGCCTGTCCGGGGTTGGGTCCGTGCTGTTCGAGGTGCTGCTGTGTCTGGCGGTCGTGGCGGAGGAGTGCTGGCGGTGACCCGGTGGGCCTGGTCGGGGCGCCGCCGTCCTGCGGTCAGCCGTGCTGATGTGGTCACCGGCACGCTGGAGCC # Right flank : TACTTCGTGACCTGGGGTGTTGTCACGTGATCATGCTGTTTTCATTTACCTGCATCCGGCTGGGGCTCCGTCGGTCCGGTGCTCTGTTGGCCCGGGGCTGGGGTGGGGTTCAACGGTATCGGGCGGTGTGGTTGTTGTGGGGTGTCTGGTCGCCTTCCGGTGTCTGGAAGGCGACTTGCCCCGGCTCGGGGTGTGATGGAGTCGGCTGGGTCCGCTGTTGGTCCAGTGGGGCGGTGTCTGGGTGGGGATGCCTGCGTGGTGGTCTTCGAGGATGGCGTCGAGGACATGGTTTGTGGTGGTTCCGTAGAGGGCGACCGCTTGGTCGTGGCCTGCGTGGCGGGCGTAGGCGCGGACGAGTGCCGGGTCGGCCTCGGCATCGGCGCGTACGGTCGCCCGGTCCCACAGGTCCTCGGGCGCTCCTCGGCCATGGGGTTTTCGACGAGGGTGGGTCCGGCAGTCTGGTTCCCGCGGGCGGTGAATGCTGCTCGGGCGGCCTGGAA # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.59, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGACGACCCCCGCGCGGGCGGGGCGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 4 1581858-1582130 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045850.1 Streptomyces clavuligerus strain ATCC 27064 isolate Leon-isolate plasmid pSCL4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1581858 29 96.6 32 ............................C CGGTAGTGGCAGAGTTCCGCGCCACCTTCGAC 1581919 29 100.0 32 ............................. AGGGCGGGAGGGTCGCGGTGCCGCGCGCGCCG 1581980 29 86.2 31 .T.............A.....G.....T. AGGTCGACGTCCTCCGGGAGCTGGGCGCCGT C [1582005] 1582041 29 89.7 32 .T...................G....T.. CCAAGCCTCGTCACCCGCGCCGCCGCGTGGCT 1582102 29 82.8 0 .T......T.....T......G......C | Deletion [1582166] ========== ====== ====== ====== ============================= ================================ ================== 5 29 91.1 32 ACCCGCCCCGCCCGCGCGGGGATCGTCCG # Left flank : CCTGACCAGGGCCAGGACACTCACCGCGGCCTGCCCACGGACCGCTTGTTCACCTCACGGACCTTCGCCGACAGCTTCTTCCGCTGCTCGTCGGTCACCCCGATCGCCATCGCGGTCACCGCACAGCCTCACGGCCGGTGGAGGTGAGGGTGAGCAGGGGCTGGCAGACGTAGCCGGGAGCCATCCCCGCCACCGTCCGCCGCGCCTTCCCGCCGTCCGCCGCCGCGCGCCGGTCACCGTCGGCGAGCAGATGCCGCACCAGGCGGTGAAGCTGCTGGACGGGTTCGTCATGAGGTTCGAGCCACTCCCGCTCCTCCTCGTCCCGGACATCATCGACGACACCAGCCTCGACACCCCACAACGACCGCACCACCCGATACCGTTGAACACCCACCCCAGCCCAGCCCCGGGCCAACAGATCACCGGACCAACGGAGCCCCAGCCGAATGCAGGTAAACGAAAACAGCAAGATCACGTGACAACACCCCAGGTCACGAAGT # Right flank : CCGGGGTCGCCATGTCGGTCTGGACCTTCGCCCTGTCTGCCCGCGCCCGCGCGGGGCTCCGCTCTGGGTCCAGCGGGTCGGTGACCACATCAAAGCCACCGACCGCGGACGGCGGTGTCCGGATCATCCGCACCGGGAGTCAATGCCGCGGCACTCCTCCGCCACGGCCGCCAGGCGCAGCACCTCAAGGGCCACGGACCCGACCCCGGACAGGCCGAGCGTGAGGCGACGGTGCCGAACCCCGAGTTCCAGGCCGCCCGAGCAACATTCACCGCCCGCGAAAAGCCAGACTGCCGGACTCGATCTTGTCGAGCACCCGACTGTCGAGGAAGCGCCCGAGGACCTGTGGGACCGGGCGGCCGTACGCGCCGACGCCCACGCCGATCCGGCACTCGTCCGCAGCTGCGCGCAGCTCGCCGGGCACGACCAGGCCGTCGCCCTCTGCGGAACCACCGCCACCCGCATCCTCCACGCCGCCCTCGAAGACCACCGGGCAGACA # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCGCCCCGCCCGCGCGGGGATCGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCCCGCGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1583085-1582874 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045850.1 Streptomyces clavuligerus strain ATCC 27064 isolate Leon-isolate plasmid pSCL4, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1583084 28 92.9 33 ....C........A.............. GTCCTCGCGCCGAAGGCGGGGAAGTGGGACGCC 1583023 28 100.0 33 ............................ GAGGGTGCGCAGGCGCTGGGCGGCTGCGCGGAG 1582962 28 100.0 33 ............................ AAAGAAGGGCCCCTCATCTCCGCCCCCTCTCGG 1582901 28 96.4 0 ......T..................... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 97.3 33 GAACGACCCCCGCGCGGGCGGGGCGGAT # Left flank : CCGGTCGACGTCCCCGTTCCGCGTGAGGTACGACGCCGTGTTCTGCGGCGTGGTCCGGGCGTGCAGGGCATGGACGGCCCCGTCCCACGAGTATCTAGCGGCATCGCCGACCCAGGCGAGTACCGTGTCCTCCCCCTCCTCCAGCACGGCCAGGACGGCGGCCCCGGTCGGCTGCCCCGGGTCTGCGACCTGGCGCCCGGCGGCCGTCAGACCCGCGCGGGCGCCGTACAGGGCGCCGTATCGCACGGCGGTCCGCGCGCACAGCAGCCCGACCGTCGGCGCACCGGGCTCGTGCCCGGAGATATCGACAACACACAACCACCCCTCCGGCCGCCGGCCAGAAGACGGAGCGGCTGCCGGCACTGTTCCGTGGGTTGGTGCCCTGACGGCTGACCGCGACGACGATGACGGCCGTGGTGGTCATGGTCTCCCCTGGCGCCGGTGTGACCGCCGACCGTAGCCAGGGAGGTGTATGCACTCGACCCACAGTGTCATCGCGA # Right flank : ACTTCGTGACCTGGGGTGTTGTCACGTGATCATGCTGTTTTCATTTACCTGCATCTGGGGCTGGGGCTCCGTTGGTCCGCGGCGGGGGCTGGGTGTTCAACGGTATCGGGCGGTGTGGTGTCGTGGGGTTGTCTGGGTCGGTTCTGGTGTCCGGAAGGCGGCTTGCCCCGGCTCGACTCGATCGGGGTGTGGTGGAGTCGGCCGGGTCCGCTGCCGGTTCAGTGGAACCCCGCCTGGTGGGGGATGTCTGCCCGGTGGTCTTCGAGGGCGGCGTGGAGGATGCGGGTGGCGGTGGTTCCGCAGAGGGCGACGGCCTGGTCGTGCCCGGCGAGCTGCGCGCAGCTGCGGACGAGTGCCGGATCGGCGTGGGCGTCGGCGCGTACGGCCGCCCGGTCCCACAGGTCCTCGGGCGCTTCCTCGACAGTCGGGTGCTCGACAAGATCGAGTCCGGCAGTCTGGCTTTTCGCGGGCGGTGAATGTTGCTCGGGCGGCCTGGAACT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAACGACCCCCGCGCGGGCGGGGCGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 6 1589969-1589819 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045850.1 Streptomyces clavuligerus strain ATCC 27064 isolate Leon-isolate plasmid pSCL4, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1589968 28 85.7 33 .AGT..C..................... TCGGGCATCCGTCCTCCTGTGGTGGCTCACCCC 1589907 28 100.0 33 ............................ CTACGCGTCCGATCCGAAGCAGTCCCCGATGTA 1589846 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 95.2 34 GGACGATCCCCGCGCGGGCGGGGCGGAT # Left flank : GTCAGCCCTTGAGCCACCTCCCCAGCTTCCGCGCTGCTCGGACCAGTAGGTCTTCGATGCGCTGCCGCAAGGTCGGTTTGGGCTTTCCGCGACGCCCCATGGGCGCCTCCCCTCAGAACAGTCACCAGTGGTTCCCGGCTGGTGACCTTCTTTTGGGTTCGGGCCGGCCCCGAGGGCGGGGGCCCGGACGCGAATCGTTGAGGGGAGGCGCCACGAAGCGCACCGGTACTCTACCCCCGGCGCCCAGTCGTACGGTCCGTTCCGTCAACTCCCGTACACGAACGTGCTACTTCCGCAGCCCCGGCCCGCCAGGCCGGTGCCGGAACAGACCCCGGGACCGAGCCACTCCCGCTCAGTGAAACCCCGCCCGGGGAAGACGCGAGGTCGTCCTCGAGAGCAACCTGGGTGATGCGTTCGGCGGTGGTTCCGCAGAGAGTGATGGCCGCATCATGTCTGGCGACTCGTGCATGGCTCCGGACGAGAGCCGGATCGCCGCTGCC # Right flank : ACTTCGTGACCTGGGGCGTTGTCACGTGATCATGCTGTTTTCGTTTACCTGCATTCGGCTGGGGCTCCGTTGGTCCGGTGATCTGTTGGCCCGGGGCTGGGCTGGGCGGGGGCTGGGTGTTCAACGGTATCGGGCGGTGTGGTCGTCGTGGGGTTGTCTGGGTCGATTCCGGTGTCCGGAAGGCGACTTGCCCCGGCTCGGGCTGCGGTGGAGTCGGCCGGGTCCGCTGCCGGTTCAGTGGAACCCCGCCTGGCCGGGGATGCCTGCCCGGTGGTCTTCGAGGGCGGCGTGGAGGATGCGAGCGGCTCGGGTTCCGTAGAGAGCGACCGCCTGGTCGTGGCCCGCGTGGCGGGCGTAGGCGAGGACGAGGCCAGGGTCGGTCTCGGCGTCGGCGCGCACGGCCGCCCGGTCCCAGGCGTCCTCGGGCGCGGTGTCGACGGTGGGGTATTCGACGAGGTCGAGGTCAGTGTTCTGGTTTTCGCGGGCGGTGAGGGCTGCCC # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGACGATCCCCGCGCGGGCGGGGCGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 2191917-2192339 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045847.1 Streptomyces clavuligerus strain ATCC 27064 isolate Leon-isolate chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2191917 29 100.0 37 ............................. CAAGGCCGACCCGATCGCGGACGAGCTTGACCGGCTG 2191983 29 100.0 36 ............................. GCGTCGGCCTCATCGAGCCAGCGTCGGGTCTCCGCC 2192048 29 100.0 36 ............................. ATGTGATTGCGTGGGACGGTGACCGTGCCGGTGCGG 2192113 29 89.7 37 ..............C..G...G....... ATGACCATGCGGACGGCGGCGACCATGGCGTCGGGGC 2192179 29 93.1 36 ..T.C........................ AGTGGCTGGTGACCCGCGTGCAGATGGCTGATCTCA 2192244 29 93.1 36 ........T................T... GGCCTGGAGAAGGAAGCAGGGACGGATCGCCTTGCC T [2192255] 2192310 29 93.1 0 .................G..A........ | C [2192321] ========== ====== ====== ====== ============================= ===================================== ================== 7 29 95.6 36 GTCGTCATCAGCCCTGGTGGGTTCGCAAC # Left flank : ATGCCCAATTTCGATGTGATTTTGAAGCGTATGGGACCCCCTGCGCGCCGATAGGACACTGGGAACAGAAGGGACGAGTAGGGCGCAGGCATAACGACTGCACAACACCCGGTACCGGAGACGCCAAAAGCGCTGCGGGAATCGCACCTGCCTGCGATTATCGGTTCGCTTCACCGAACCTCCACATCGTGCCACGGAGGTGAAGCAACCGGGGCAAGGCGTCTGGAGCCCTATCCTTGTCCCCGGCAAGGTCACGGACCCATGGGCTCCGGGCACCATGGCCACACCATCGGCCCCCGTAGCTCAGTGGATAGAGCAGGCGCCTTCTAAGCGCTTGGCCGCAGGTTCGAGTCCTGCCGGGGGCGCACATCGCCCGATCATGTAGACCTCCCCCCGGAGGGCCGCCCGTGACACTTGGCGGGCACCTCTGGCCTCGGCGGGTGCATTACCGTCGGGTCGCTGCGGGAGTGGCTGGCCGAATGCTCCGCGTACGTCATCCC # Right flank : CATCCGTTCGGCCTGACCGGCGACTGCCCAATTCCCCCCTCCGTCAACGCGGACCCGGGATACAGCGACGGAGAGCATCAGGACCGTCTGCGCCCCGCCCCCTGTCAGGCAGGCCGGTGAGGATGATGCAGATTGCGGTGACCCCAGCGCTCACGTTCAACAGCCACGCATCAGACTTAGCCGCTTTCGCGGCAGCCCGGCCATTCACGTACACCACCAAGAGCCCCGCACCGCAAAAAATATGATTACTTCGTCGGCCAAATTTAGCCAGCGCGCATGCGCCGATGCAGCCCATTGATCTCCCCTACGGTCAGCCCCTCTCGGATGGAGTTGTAGTTCAGCTCTTTCCGAGCAAGACCGTTGGCATACGAGCGCCACGAATAATCGACCCGTTCAGCGCAGGGCCACTGGACAGGTGAGGCCGTCGGCCCTCACAGCCGACGGCCTCGCCCTCAACCCAACAGGGCTGATAACGAAAAACCTAACTGCAACTCCACCAT # Questionable array : NO Score: 2.89 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAGCCCTGGTGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 2201434-2201919 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045847.1 Streptomyces clavuligerus strain ATCC 27064 isolate Leon-isolate chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2201434 29 100.0 36 ............................. ACCCACGCCGAGTCGGGAGCGTCCTGGCGCAGTGTG 2201499 29 96.6 35 ..................A.......... GAGATGGCCCAGTCGCCTTCTGCGGAGACGTGGAG 2201563 29 100.0 35 ............................. GTGATCCGGGCAGCGGGGTAGCCGAGAGCGCGCGC 2201627 29 100.0 35 ............................. AGGGTGAACGCCATGGGATGGCGTCGCCCGTCAAG 2201691 29 100.0 38 ............................. CGGTGGGTGAGCTGGACGTGGAGGCCGAGGGCCTGGGT 2201758 29 100.0 35 ............................. GACCCCTCCCCCGCCCCTTCCCGGGGCCCTCCCCA 2201822 29 96.6 39 ..........A.................. TCGCCGACGACGGCCAGGGGCTGGCCGAGCCAGTGCGCG 2201891 29 75.9 0 ..............CC.CA..C..C..C. | ========== ====== ====== ====== ============================= ======================================= ================== 8 29 96.1 36 GTCGTCATCAGCCCTGGTGGGTTCGCAAC # Left flank : GAGGAGCTGGCGACGACCGTTTACCACCGCTCCCTCAAGCGGAAGGTGAGCTACGAGGAGCTGATCCACCTGGAGGCCCTGAAGATCGTCCGCCTGTGTCTTGAGGGCCAGCCATACAAGCCGTTCCGGCCGTGGTGGTGAGGGGTTGTGTTCGTGATCCTCATCTATGACACGGCAGTGGAACGCAACCCCAGGGTGCTGAAGACCTGCCGGAAGTATCTGCACTGGACGCAGCGCAGCGTCTTCCAGGGCGAGCTGTCGGCGGCGCAGTACCGGGCGCTGATGGCCGCGCTCAGCGGTGCGATCGATCCGGGGTACGACAGCATCAGGACCTATACCGTGCGGTCTCCGGAGATGGTCGAGACGGATACGCTGGGCGTGGACCTCGGGGGGCCGGGGGACATCATCTGACCTGGGCGGATGCAGTACCGGCGGGTCGCCGCAGAAGCCGCCTCCAGCGAGGCTCGCGGATGGCCTCTGAGCTGCGATTTTACTCTCGG # Right flank : CCCCACCTGACAGAACGCCAATTCAGTCAACCTTCCCCCCACCCCAAGTCATTCTTTGCCGCTTCATAGCCTTCGCAAGGTTTTCGCTTGACCCTGTGCGGAAGGCGGGCCGCCCTCGGGCCCGTACAGATGATCCTCGCGGGTCACGCCTGACCCGTGAGGCCGGTGAGCAATGCTCATGGCCGAAGGAGCCTCGGCATGATCCGTTTTTCCAGGACGCTTTCCTCACCTTGGTCCGCCGCAGCGGTCGGCGCGGCCGTTCTGTTCGGTGTGGCGGCGCCCGCGCCCGCGGCCCACGCCGCGCCGCTCGCGTGTGGGCAGACCGTCACGGTCAGCGTCGTGCTCAGCGCGAATCTGCTCAACTGTCCCGGTGACGGTCTGATCGTCGGGGGCAACGGCATCACCATCGATCTCAACGGGCGTACCGTCGACGGCGTCGGGCTTGGGGTCGGTATCCGGAACAACGGGTTCGACAACGTCACGGTCACCAACAGCGGCAG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAGCCCTGGTGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //