Array 1 15-409 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEUW01000042.1 Escherichia coli strain KCJK8511 NODE_42_length_20757_cov_3.831992, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 ............................. CGCGAGCTATCTCCGGTTATATCACTACTCCT 76 29 100.0 32 ............................. TGGAATTTTTGCTCGGTCATGTCGAACCAGAA 137 29 100.0 32 ............................. ACACACCGAGATCCTCAAACCTGGCTGGAGTT 198 29 100.0 32 ............................. CACGCGAAAAAAGGAGAGGGCGGGAAAAAGGA 259 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 320 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 381 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TATGTATGCTTAGTG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 686-108 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEUW01000704.1 Escherichia coli strain KCJK8511 NODE_704_length_784_cov_2.210046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 685 29 96.6 32 ............T................ GGCGAATACAAACGCTGGCGCAACGAGTCCTA 624 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 563 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 502 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 441 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 380 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 319 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 258 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 197 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 136 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAC # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //