Array 1 77672-76501 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRKE01000004.1 Parabacteroides distasonis strain AM16-4 AM16-4.Scaf4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 77671 33 97.0 32 ................................T ATAGCTGGACCACTTCCTTCCCGGCTACCGGG 77606 33 97.0 32 ................................G GCGGCCCGGGAGATGAAAGAGCGTATTGCGGC 77541 33 97.0 36 ................................C GTAGTTCTGCCCACCATTCGGGATCATGGACGGATA 77472 33 97.0 34 ................................G CCTGTATTTGGAGAAGAACAGCTTCTTTTCCTCA 77405 33 97.0 34 ................................G CTTGGTAAGCATGGAACTCACGGGGATGGTCATA 77338 33 100.0 34 ................................. TCATGAGACTATCTGTTGTACTATGTATGCTCAG 77271 33 100.0 34 ................................. GTTTACAGTATAATGATTATACCGCTACCTATGC 77204 33 100.0 34 ................................. ACAGCACGCCGCAAGATACGACGGATTACATAAC 77137 33 97.0 37 ................................G ACAGAACTGTGGACGGTCTGTGCCTCGATATACGAAG 77067 33 97.0 33 ................................G ACAGGTCATGGTGGGGTTCGCCTTGGAGACGAA 77001 33 97.0 34 ................................G ATTATGAGATTATTGGAGGAAGTTAATACCACCA 76934 33 100.0 33 ................................. AACATGGAGATCATGACCTTGCACGTAGATGAT 76868 33 100.0 35 ................................. TATCCACCCCCTTTGTATTACATCGTTATACGTTA 76800 33 97.0 35 ................................G ATTATGAGATTATTGGAGGAAGTTAATACCACCAA 76732 33 100.0 34 ................................. GGATACTGAAAACGGAGAATAACAATCATGGCTA 76665 33 97.0 34 ................................C ACGTGGAACAAAGTAGCGGAAGGTCTTAGGCTTT 76598 33 100.0 32 ................................. CAATACCCAAAGCGTTTATGAGTATTACCTAA 76533 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 18 33 98.3 34 GTCGCACCCCGTGTGGGTGCGTGGATTGAAACA # Left flank : TGATAATTATCCGGTATTTCTAATAAAATGATTTACGATTATGCATATTCTTGTGACTTATGATGTGGATACTACGAGCAAAGAAGGAGCTCGCCGCCTACGACATGTGGCTAAGGCTTGCATAGATTATGGCCAAAGGGTACAGAATTCTGTCTTTGAGTGTGAGGTGACAGAAGCACAATATTGTCTCTTGATTGAACGAATCAAGCGTATTATTGATATGTCTCTTGATAGCGTTAGATTTTATATTCTCAATAAAAACGAGAATAAAAGGGTAAAAGTGATAGGTGTTGAAACTGCTTACAAAGTTAATAATGCTCTTATCATATAATTTATGCGAATGTGGAGTATTACGAAAAAAGTAGTATTTTCGCACCCCTTAATAATTAGCAGATTAACCCGTCTTTAAGGCGATTGCAGCCATTAAGCTGAAATAAAAATGAGAATTCGCATATTAATAGGTCTAATTTATTGACTTATAATATGTAACTTTGCACACT # Right flank : TTTGTAAAGCGCAAGCTTTTTCATAAAAGATATACTTACGTGATGAAGTATATCTTCTATGGGACTTGAAGTGTTCTTCTGCGACGAAGGGATTAGTACTTCGTAAAAATAACTTTTTAAAGTCACTGACTCTGACATATAATTTCGCTTAGTTATTTCTGCAAAAATCATTCATATGTAAACAAGTTTCGTATATTCGCGACCTTATAATAGTTTAAATATGGCAGAGGAACTACGGATTAAAAACGGTGATAAACAGGAGATGTATGAGACATTGCTCCCGCAAATCGCCTCATTGGTAGGTAACGAGACCGACCTAATCGCTAACATGGCGAACATCGCCGCAGCACTCAAGCAGACTTTCGGTTTCTTTTGGGTAGGTTTCTACCGGGTCATAGACAATCAGTTGGTATTAGCGCCTTTTCAAGGCCCTATCGCCTGTACACGTATAAAATACGGAAAAGGGGTATGCGGCACGGCCTGGAAGGAGGCTCGTACGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGTGTGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 44222-42719 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRKE01000010.1 Parabacteroides distasonis strain AM16-4 AM16-4.Scaf10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 44221 47 91.5 30 A......C.......................GA.............. TTCTCTGCGTTTTGGTTCAATGCGATTGCA 44144 47 100.0 30 ............................................... ACAACAAGACTGTACTCGAAGGAGGAGTTA 44067 47 100.0 30 ............................................... ACAACAAGACTGTACTCGAAGGAGGAGTTA 43990 47 100.0 30 ............................................... ATTCGCTTAAAGCATGAGCCGATACGTTGA 43913 47 100.0 30 ............................................... TGGGTTTGATATACATGACACCCAAAAGGA 43836 47 100.0 30 ............................................... AGACTATTTTCTGATCAAGTCCGGGGCTCT 43759 47 100.0 29 ............................................... ACACAAAAGCCGGATGCGTTGGCGCAATC 43683 47 100.0 30 ............................................... TTCGGTTTAAGGTAAAGACATCGTGAATGA 43606 47 100.0 30 ............................................... TTCGGTTTAAGGTAAAGACATCGTGTATGA 43529 47 100.0 29 ............................................... CATACTGATGATATGCAAGGATATAGAGT 43453 47 100.0 29 ............................................... ACCACTAACAGTATTATCATGCAGACAAA 43377 47 100.0 30 ............................................... GATTCCCTATTGTTGGATACTCTCTCATCA 43300 47 100.0 31 ............................................... CTGAAGGACAGCTTCCTTTTTAGGCTTCTTC 43222 47 100.0 29 ............................................... CTTTGGCTGAGGACAAGGAAGCTGTAATA 43146 47 100.0 29 ............................................... GTTGCGTACAATACCCTTGTTGTAAATCT 43070 47 100.0 29 ............................................... GTTGCGTACAATACCCTTGTTGTAAATCT 42994 47 100.0 29 ............................................... GAGATATAGGGGCAAATGATACTATCTAT 42918 47 100.0 29 ............................................... CTTTTTAAATCTGGCAAAGAAATCAACGA 42842 47 100.0 30 ............................................... CGATGATTTTTTAAGTAGTTGATTATATGC 42765 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 20 47 99.6 30 GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC # Left flank : TCTAAACGCTTGGAGAATCGATTATTTCGAGGCAAGGTACGACTTGCTTCCAAATTCGAAAATATTTTTTCACAATAATCTATTGAACAACGCATTACAAATTTTCACTGATTTATTCTAGCGAAAGATTTCGTCTTCTGTCAACCTCAGTCGGACAAACAAGCGACTTTTTATCTGAAAACAATAAGCTTTTCATCCGAAAACAATCGGATTTCCGGTCGGAAACAATAAGGATCGCAGTCGAAAACAGCATACAACGCCGTTATAAACACCTTACTATTGGATCATAATCCCTCTACAAAGCCTATTCATACACTAAAAAATGGCGAAATACGCTGTTTCCGCCTTCCTTTTCTCTCTATTTTCGCATTTCCATAAAAAGCCTTTATCAGCTAAAAGTCTCCATTTTGAGCAAAATGACAGAAAAAGAGATATTTTGATGACATAAAAGAGAATGGCTTACTTTTTGGTGTAGCTGCCCCAATATTTTGCAATATTTT # Right flank : ATATTATCTATTAAAAACTATTAATCAATGGATTACAAAGCACATCAGAATAAAAAAAACAGATATTGTTTCCATTAAAAATCCCGCTTGACAGCGGGATTTTTCTTTTAGAACAACTCCAATTGCTGTCCAGGAGTATTCACTTCCACCGTTTTCTTTCCATAAAAAAGTTCAATATTCCCAAACTGCTTATCCGTAATACACATGATTCCGACATTCCCATGCTCCGGAAGAAAAGATTTAACTCTTTTTACATGTACGGCCGCATTCTCGCTACTAGCACAATGGCGGACATAAATAGAAAACTGAAACATCGTAAATCCATCTCTTTGTAGATTTTTCCTGAAATCCACATACGCCTTTTTCTCCTTCTTCGTCTCGGTAGGCAAATCAAACAACACAAGTACCCACATAACACGATATTCGCTAAACCGATCCATATTACATTTCCGGATAGGAGATTCTACGCAATTCGCCACTAAAGCACTTATACAGAGAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //