Array 1 18097-17800 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVQV01000009.1 Bacillus pumilus strain LDZX38 NODE_9_length_94172_cov_42.3097, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 18096 32 100.0 35 ................................ TTTACAAATCCTTGGATACCAAAGACAACAATTTC 18029 32 96.9 36 ...................T............ GATCTCCTCGATCTTGGCTTGATACGTTGGATTGTT 17961 32 100.0 33 ................................ ATCAATGGAACATCATAATAAAAAGTGATTGTA 17896 32 100.0 33 ................................ GGTGAATGGTGGGAAAAGACAGGAAAGCCTGGT 17831 32 71.9 0 .........A....A.....A.A...CACTG. | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 93.8 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TTGAAATGAGACGTAATTTAGTCACCCCTGTTGTACCCACCAAGTCGCACTCTACATGAGTGCGTGGATTGAAATGTCCCTTAACAGCCTCTTTTGGATCTACATCCCAGTCGCACTCTATATGAGTGAGTGGATTGAAATGCAAAGGCCAGCATGTCGTCAAGAAAGCTTTGCGCGTCGCACTCTACATGAGTGGATGGATTAATAATTGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTCTGCGAATTACATAAATTCAAAATAATGTACTTCCCCCTAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCAACAAAAGGATAATGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGTTTGGCAATTTTCATAATTTCAGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGACGACCTCTCCATTCATACTGCGCCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATTGTAGGCGAAATAATAATGTCTTCAATTTCATCGAATCGTGCACGCA # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 18688-18388 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVQV01000009.1 Bacillus pumilus strain LDZX38 NODE_9_length_94172_cov_42.3097, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 18687 32 100.0 34 ................................ AAAATCGTTGTTTTCTATATGAATATCAGAATAC 18621 32 100.0 36 ................................ GAGACGTAATTTAGTCACCCCTGTTGTACCCACCAA 18553 32 100.0 34 ................................ GTCCCTTAACAGCCTCTTTTGGATCTACATCCCA 18487 32 93.8 35 ...........T.......A............ GCAAAGGCCAGCATGTCGTCAAGAAAGCTTTGCGC 18420 32 90.6 0 ...................GA......A.... | T [18391] ========== ====== ====== ====== ================================ ==================================== ================== 5 32 96.9 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CCTGAGACGGTAGGAGAAGCATTCAAAGTAGATGTGATGACACCACATCATTCAGACTACAACAGCGTCAAGTTAGATAAGGTGAATCAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCTGAAGATGCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGACATTTCATGAAACTTGGTGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAAGTGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTTTACAAATCCTTGGATACCAAAGACAACAATTTCGTCGCACTCTACATGAGTGTGTGGATTGAAATGATCTCCTCGATCTTGGCTTGATACGTTGGATTGTTGTCGCACTCTACATGAGTGCGTGGATTGAAATATCAATGGAACATCATAATAAAAAGTGATTGTAGTCGCACTC # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 26687-26327 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVQV01000009.1 Bacillus pumilus strain LDZX38 NODE_9_length_94172_cov_42.3097, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 26686 32 100.0 33 ................................ ATGCCTTTAAGCTCTTTTAAAACGGTGTTTGAT 26621 32 100.0 34 ................................ AATTACAATCTACCAGGTTTGTTAATAAAGTCAT 26555 32 100.0 34 ................................ AACTTTTGTATTTGACATATTAATTACCCCATTC 26489 32 100.0 34 ................................ AAATCACTTTCGGCGATCTTTTCCCAAAAAGAAA 26423 32 96.9 33 .............A.................. TTCGGTTTGTAACTATATTTCGCACCTCTTACA 26358 32 84.4 0 .............A.......C.AT..T.... | ========== ====== ====== ====== ================================ ================================== ================== 6 32 96.9 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CTACATGAGTGCGTGGATTGAAATAACGCTGAGGATGCACCAGAAGGAAAGAAAGACGCGTCGCACTCTACATGAGTGTGTGGATTGAAATACAGTAGCCGTATTAATTACAGGTCTTATATTTGTCGCACTCTATATGAATGTGAGGAATAAAATTCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTCAGGTGAACATAAAATCCCTGGAACATTCGCACCTTTTTATTCGACAAAAATGGGTAAAAATGTATATTTCGTGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : GATTGTCTCTTAAACGGGTATGGCCACCTCAAATCCATCTTCTTACAATATCCTCTTTCAAATAGCCATCAAATATACTGTTCATTTGTACAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAGTGAATGATGAAGGAGGAATTGTTTTGGGTGAAACGGAGCGAACCGGTAAAGTTGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCCGAAGAAGTAGACTTTGCTTCTAATCATGGCGGGCTGACAGGAGATTCTAGAGAAGTGATGTGGTTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTTTTTGATGAGCAGTA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 27326-27031 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVQV01000009.1 Bacillus pumilus strain LDZX38 NODE_9_length_94172_cov_42.3097, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 27325 32 100.0 34 ................................ ATTGGCACTTGTGGAATATGGGCTACTCTTAGTT 27259 32 100.0 33 ................................ CCATCCCAATTTCAGAGCTTGGAAGTTACTAAA 27194 32 96.9 35 ...........C.................... AACGCTGAGGATGCACCAGAAGGAAAGAAAGACGC 27127 32 93.8 33 ...........C.......T............ ACAGTAGCCGTATTAATTACAGGTCTTATATTT 27062 32 84.4 0 ................A..T.A...A.A.... | ========== ====== ====== ====== ================================ =================================== ================== 5 32 95.0 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGATCGGCTAGGCGAAACGAGACAAAACATCTCAAACATCCACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGAAAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACTTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAGTAGACCGGCTGATTTACCAAGAGGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGAAGCTGATGGTGCGAATGTGAGGTGAACATAAAATCCCCGGTGCATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGTA # Right flank : TCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTCAGGTGAACATAAAATCCCTGGAACATTCGCACCTTTTTATTCGACAAAAATGGGTAAAAATGTATATTTCGTGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATATGCCTTTAAGCTCTTTTAAAACGGTGTTTGATGTCGCACTCTACATGAGTGCGTGGATTGAAATAATTACAATCTACCAGGTTTGTTAATAAAGTCATGTCGCACTCTACATGAGTGCGTGGA # Questionable array : NO Score: 8.73 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //