Array 1 387113-392083 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAO01000002.1 Thiobaca trueperi strain DSM 13587 Ga0244666_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 387113 29 96.6 32 ............................A GTCGGGTCGCTGATCGCGCGCATCAATGCGTC 387174 29 100.0 32 ............................. GTGGATCGCGCGAATGTCATAGAACGCTAAAA 387235 29 100.0 32 ............................. TAGTCCTGAGCAAGATAATTCGCCCACTCTGG 387296 29 100.0 32 ............................. GCTCCCTCTTCGCGCCGCAGCAAGAGGCCATG 387357 29 100.0 32 ............................. CCCAGCACCACCCCGCCATCGTCATAAAGCCG 387418 29 100.0 32 ............................. CCCCGGTGGATCAGACCGGGGCTTTGGCTGGA 387479 29 100.0 32 ............................. TTCCGCTGCGACATGAGCACCGCTCTGTTGCG 387540 29 100.0 32 ............................. TCTGTTTCCGCCCGCGACTGGCGTGGAGTCGC 387601 29 100.0 33 ............................. CTCAGGGGCCAGACGTGGCACATCGACAAAATC 387663 29 100.0 32 ............................. CTCAACCAGTTCTTCGAGCGAGCGAGCGGACG 387724 29 100.0 32 ............................. CCCACTATCCGCGCTATTCGTGACGCTTTGGG 387785 29 100.0 32 ............................. GCGTTCGCCCGTGGGATCGGTATAGAGATACC 387846 29 100.0 32 ............................. ATTTCCAGTTTCTTGCCGCATTTGAAGAATAG 387907 29 96.6 32 ............................T ATTTTCAGGAAAAAACTTCCTGACCTGGATGT 387968 29 100.0 32 ............................. TAGAAAATAAGGCCCATTATTACCTGAGAAAA 388029 29 100.0 32 ............................. TTTGCCGAATAAACGATCAAACTAGTTTGTAC 388090 29 100.0 32 ............................. CCTAACGATGATGTCTATCTCTTAGGCGATGT 388151 29 96.6 32 ............................A AGACCGCTGAACTCCTACTCATGGCTGCAATC 388212 29 100.0 32 ............................. AATAGCTCCCACTTCAACCCATTTCCACTTAT 388273 29 100.0 32 ............................. ACTACTACACGATAAAAGTCCCGCACCACATC 388334 29 100.0 32 ............................. GCACGGCGACGGATCGCGTCAGCGGAAAAGAG 388395 29 100.0 32 ............................. GGCGAACAGCAATGATCTTCACTTCTTGATAG 388456 29 100.0 32 ............................. TTGTATCAATTGTGGGATGCGTCAATCGTGAC 388517 29 100.0 32 ............................. GTTTTTGAAGGTTTCTGCGTTCGAGACGATAT 388578 29 100.0 32 ............................. CAACCGTCACCCAAAGCTGGATTGATGAAGCC 388639 29 100.0 32 ............................. GCGGCGCCGGTTTCGCCGGGGCGGGCTTGGGG 388700 29 100.0 32 ............................. GTGGCGCCTTCGGTGACGATGGGATCCGAGCC 388761 29 100.0 32 ............................. ACGACCGGAGCAGGACCAGAGCCTAGATGAGT 388822 29 100.0 32 ............................. TTCTGGCCGCCGACGAACCCGAGCCAATACGT 388883 29 100.0 32 ............................. GAATGGATAGCCGGATTTATCTGCTGCATATG 388944 29 100.0 32 ............................. CCCCTGCGCGCGCCATCTCCAGCGCCCGTTCC 389005 29 100.0 32 ............................. CTGTCAACACGAGGATTTTTCATGCGCCCGAC 389066 29 100.0 32 ............................. CGACGCGAGTATGTTGGCGCGCTGCGCCTGGC 389127 29 100.0 32 ............................. GTCGGCGCGCTCTTCGCTGAGATGGGCACCGG 389188 29 100.0 32 ............................. TCTCGGCAAATTACGACGTCAATCACCAGCAA 389249 29 100.0 32 ............................. GATGACGGGTCGCGCGCGATCCTGGCCGTAAA 389310 29 100.0 32 ............................. CCACCGGCCTGCCGGTCGCCGTCGCCTTCGCC 389371 29 100.0 32 ............................. CTGGACGACAAAGACCGGCGTTTCCTCGTCAT 389432 29 100.0 32 ............................. ATGGGGGGTTATGCAGGCAACAGGAAATATGT 389493 29 100.0 32 ............................. CAGCTTGAATCAGCCATTGCTCACGACATCCG 389554 29 100.0 32 ............................. TGCTGATTGTATCCAACACTAACGACTCCGGA 389615 29 100.0 32 ............................. ATTGAGGGCGCCGAGTGCCTGCGCGCGAAAAT 389676 29 100.0 32 ............................. GCCGAATCTCCGCCAAAGACCTGCGCCGCGCG 389737 29 96.6 32 ............................C GGCGCCTCCATCCGTCGCGTGGTGATGAAACG 389798 29 100.0 32 ............................. ATTTAAATCGCCGCTGCCGTCTGGAATTTCCA 389859 29 100.0 32 ............................. GCTCGTCGCTGTCATCCTCCTACATCAGCTCC 389920 29 100.0 32 ............................. GCGACGATCTGGACATCGGCCCGCCGCCGGCG 389981 29 100.0 32 ............................. TCGAGTCGTTGACAGCGGCACGGCAACTACAC 390042 29 100.0 32 ............................. GTTGATCGCTGCGAGATTTACATCGAAGACGG 390103 29 100.0 32 ............................. TAGGTCCGTCCTTTGTACTGGACAGGCTGCAT 390164 29 100.0 32 ............................. CTTGGCGACACGCCGGAGCAGCGGGCGATGCG 390225 29 100.0 32 ............................. CCTTCCTGCATTGAAGACGCTGCCGGAACGTC 390286 29 100.0 32 ............................. GTACCGAATCGCCTGCGTCACGGTATCGGTCA 390347 29 100.0 32 ............................. GCATGGGACGTAGAGCGCGCCCGTTACGACCT 390408 29 100.0 32 ............................. GCGCAAAGCTCGCCCCAGTCGTCGATGAAATC 390469 29 100.0 32 ............................. TCAGAAATGCGTCAGCCGCCTACCCTTCCGGC 390530 29 100.0 32 ............................. CTCCTAGTTCATGCATTTTGTCGTTCTCACTG 390591 29 100.0 32 ............................. CGAGGGCGTCAATCCAACTTACGCCGGCTCAA 390652 29 100.0 32 ............................. ACCCCGTTTGCAACGCAGATTGGCATAAATCC 390713 29 100.0 32 ............................. GCGCATAGCCGCCACGGCATGACGCGGTTCGG 390774 29 100.0 32 ............................. CTGGGGCGGGTGGGGGCGGTGGTGCGCGGGCT 390835 29 100.0 32 ............................. GGCACACGTTTGATGGACTGCGGCTGACGCAG 390896 29 100.0 32 ............................. AAGTGGCAGCCCGCGCCAACGGGTTGCCGGAG 390957 29 100.0 32 ............................. CTGCACCGGCGCGTCAACGAGGTGGAGCAGCG 391018 29 100.0 32 ............................. GCCGGGCGGACGATCAAAGTGCGGCAACTCCA 391079 29 100.0 32 ............................. CAGCATAAGAACGTGCTCAAGCTGATCGCGCA 391140 29 100.0 32 ............................. CCAAGCGCGACGGCAACCAGGAAGCCATCGCC 391201 29 100.0 32 ............................. CAAATCCTCGACGCCTTCGTGACCGACCAGCG 391262 29 100.0 32 ............................. ACGAAATCACCCGGCGCCTGCTGGGTCCGACC 391323 29 100.0 32 ............................. TTGGCTTGCGTTGGCCATGACAGGCTCCCAGG 391384 29 100.0 32 ............................. GCGGCGACCAGGCCCTGCACGACGCTGGCGGT 391445 29 100.0 32 ............................. AAATATGCCGGAGGTGCGCAATGACCGCGCTC 391506 29 100.0 32 ............................. TCGCTCCAGCCGAGCCCGCGCATCGGCGCCGT 391567 29 100.0 32 ............................. GTCATCCGCCTCGCGGTAGTTCCAGTCGAAAT 391628 29 100.0 32 ............................. GCGTCGAGGATTTGCTTACGGCTCGCCGAATC 391689 29 100.0 32 ............................. TCTTTGGCGAGCAGCTCATAGGGGACGTGCAG 391750 29 100.0 32 ............................. TCAGTACACCGGGTGCAGCGGGCGACGGGCGG 391811 29 100.0 32 ............................. ATCGGCGGGGCAGGGCTAGGCTGGGCAGGGCT 391872 29 100.0 32 ............................. CGTCCAGCTACTCGGGCACGGCGACAACGAAT 391933 29 100.0 32 ............................. GCAACCTGGAATTTACCCTGGCTGATCTACCG 391994 29 100.0 32 ............................. GCATGGGTCGCCTCATGAAGGTCGCTATCGGT 392055 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 82 29 99.8 32 GTGTTCCCCGCGCTCGCGGGGATGAACCG # Left flank : GATCATCCCGATGATCGAAGAGGTGCTGGCCGCCGGCGAGATCGAGCCACCCAAGCCAGCGCCGGAAGCGGTCGCCCCGGCCATCGACGACGGGAAGCCCCTGGGCGATGCTGGTCATCGTCACTGAAAACGTCCCGCCGCGTCTGCGCGGACGGCTGGCGGTCTGGCTCCTGGAGATCCGCGCCGGGGTCTATGTCGGCAACCCGTCCAAGCGGTTGCGCGAGTTCATCTGGAATCAGGTGCTGGAAGGCGTCGAGGACGGCAACGCCGTGATGGCCTGGAACACCAATACCGAATCCGGCTACGACTTTCTCACCGTCGGCAAAAACCGGCGCATCCCGGTCGATTTCGACGGCCTCCGATTAGTCAGTTTTCTACCGCCAGATGAACCTGAAAAAGCTCTTTAGCAATCTAAAGCGAACCCCTTTGAAACGGGCCATTTTGCTGGTAGATTTGTCCGCGCCTGATTTTCTTTTGCAGATCAGGTAAATACGGGAAGT # Right flank : GCGGGATGAGAGCAGCGCCGAACAACAGCCCCGGTGTTCCCCGCGCGCGCGAATAAAACGCGACGGGAAGAGTGAGGTTGATAAACAGTTACAAATAAGCTAACATAAGCTCACTTTCTACAACATACGCTCTTTTCGTCTTCATGGCCTACGTCCCCTTGCGGAAGGCGGTCGCCGAACTTGGACTGCACCCCAATACGCTGCGTAAATACGCCGATGACGGACTTATCCCCAGCATCCGCAATCCCGCCGGGCAGCGCCTCTTCGACGTGGACGCCTACCTGCGGCGCGCGACCGATGCCGTCACCATCCTTTACGCCCGCGTCAGCAGCGCCAAGCTTTGCTCCGACCTCGTGCGACAAATCGAGCGTTTGCGGCGCGTCTACCCCGACGCGGAAGTCGTCCAGGACATCGCCAGCGGACTCAACTTCAAGCGCAAAGGATTGCGCGCCTTACTGGAACGACTCCTGCGCGGCGATAAGCTCCGGGTTGTGGTTGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15704-12732 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAO01000015.1 Thiobaca trueperi strain DSM 13587 Ga0244666_115, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15703 28 100.0 32 ............................ TCAACTGCACATAACCGGGGCCGCTCAGAGAA 15643 28 100.0 32 ............................ TTGAGTGCATCAATCGCCTGTCCGAAATTCAT 15583 28 100.0 32 ............................ GCATCGCACAACTCAATCTCCGGCGTCAGCGC 15523 28 100.0 32 ............................ AGACAGAGACAACAAGGAAACCGAGGGCAACG 15463 28 100.0 32 ............................ TTGAGGCATGATATGGACCTCGTTTATTTCGG 15403 28 100.0 32 ............................ TATTCCGGCAGCCTCGCCCGGCTGGTCCACGG 15343 28 100.0 32 ............................ GTTGCATGGGAGGTCACTGGCGCGAATGCAAT 15283 28 100.0 32 ............................ GAGGACGTGAGCGAGGGCTTTATGGCCTCAGC 15223 28 100.0 32 ............................ TTGTCCGACTCGCTCAACACCGCATTCTCTTT 15163 28 100.0 33 ............................ GCTGGCTCGCTTCGGCAAATACTACGCCTTTGC 15102 28 100.0 32 ............................ CAGGACGACCTCACGCGCGGTTACGGCGCCCT 15042 28 100.0 32 ............................ GCGTCTCCGCCAGCGACATCATCCACCACTAC 14982 28 100.0 32 ............................ GCCTTGGTCGTGCCACGGGCCGCGAGAGATGA 14922 28 100.0 32 ............................ GTCACGGATGCGGTTGCCGTTGGGCAGATCGC 14862 28 100.0 32 ............................ TGGTCCGCAAACAGACCCGCAGCCCCTTCACT 14802 28 100.0 33 ............................ TGCCCCAGGTCGATGTCGAGCCGGGAACCTTCA 14741 28 100.0 32 ............................ GAGCGGGGACGGGACTTCAATCCCTTCGCCCG 14681 28 100.0 32 ............................ GGTCAGCAGGGCGCGACCGGCGGCGGTGCTGT 14621 28 100.0 32 ............................ TCCGACAGCGCATTGAACCGCGCGTCACCATC 14561 28 100.0 32 ............................ TACAGCCCGCCGAACGCCGCGCGGTTTGGGGG 14501 28 100.0 32 ............................ GCACTGATCAGCTCGGCCATCGCGCGCTCGCG 14441 28 100.0 32 ............................ TGCTGGACCACCGCGCCCGTGCTGCCGTCAAC 14381 28 100.0 32 ............................ TCGACCGGTACCAGGTTCATGCGCTGCACACT 14321 28 100.0 32 ............................ AAACGCGCTACAGTCAGGCAAAAAATACGCAT 14261 28 100.0 32 ............................ ACCAGCAGTTGGTTGCCATCTGCATCGAGCAG 14201 28 100.0 32 ............................ ATAACCAATTCAATAGCCGCTTCATCCGAAAC 14141 28 100.0 32 ............................ TACGGCATCGCAGACGTTAGCGAAATCGTCGA 14081 28 100.0 32 ............................ GGGACGCCAAGCGGGATCAGGTAAGCGTCGTT 14021 28 100.0 32 ............................ GGGCTGGTGAGACGGTCGAGATCCCTGAGATC 13961 28 100.0 32 ............................ AGGGCGAGAAAGCCGATACGGCAATCCAAGGC 13901 28 100.0 32 ............................ TCGCCCGGCGTCAGCTCGGCATTCCGGACGAC 13841 28 100.0 32 ............................ AAGCGCCAAACCGCGCCGCACCCGAGCCAAAT 13781 28 100.0 32 ............................ GCCATCCATCCATTGTCCGGGCGACTGCATTC 13721 28 100.0 32 ............................ TGCCGGACGGCAGCTCCGGCATTGCGCCGCTG 13661 28 100.0 32 ............................ TATGACAACCTGCTCGACGTGCTGCGCATTCA 13601 28 100.0 32 ............................ TGAACCAGATGGAGACCGCGCGCAATGAGATG 13541 28 100.0 32 ............................ GTCACACCGGTCAGCCGAAGGTCGATCCCTAT 13481 28 100.0 33 ............................ ATGTAGTCGGCGGGTGCTCAGCGGGTGATGAAC 13420 28 100.0 32 ............................ TGCCTGTCTCTGGCAAGATCCGGCCAGGCATC 13360 28 100.0 32 ............................ AGTCGCGGCGCGGATGCCCTTGCCGTCGGCAT 13300 28 100.0 32 ............................ TTAACGCCCGCGGCGCGGTCACGTGGCCACGG 13240 28 100.0 32 ............................ GATAAAATCGAGCAGGATGCGCTCAGTCATGG 13180 28 100.0 32 ............................ GGCGGATCGCGAGACTCTGGCGGTGTTCATGC 13120 28 100.0 32 ............................ AGGCGGCGACATCGAAGCCGGCGCCTTGGTCG 13060 28 100.0 32 ............................ GTCGTCAGATCGATGTCGCCGAACAGGCCGCC 13000 28 100.0 32 ............................ GCTAACACCGTCCCCGCTGGCTATCTCGAAGA 12940 28 100.0 32 ............................ TCGTCGATCAGCTCGCGCAGCGTCCGCCCGGA 12880 28 100.0 32 ............................ GTGATGCTGTTGCAGCCCGGCAGCGTGCGCCC 12820 28 100.0 32 ............................ ACGCTGCGCACCTATGCCCTGGACATCGCCCG 12760 28 96.4 0 .......................T.... | G [12740] ========== ====== ====== ====== ============================ ================================= ================== 50 28 99.9 32 GTTCGCCGCCGCGCAGGCGGTTTAGAAG # Left flank : GGGCCAAACACCTTTACGCCTGTTTGGCCGGCAACTACCGGGTGGATGGCTTCAAACGCGATGAGGGACAGGGTCAAAAAGCAACCCAGGCAGATCGCGTCAATGGTTTCCTGGATCACGGAAACTACATTGCCTATGGCTATGCGGCAGCGGTGCTGAACACGCTTGGCATCAGTTTTTCTTTTCCGCTTCTGCATGGCAAAACCCGACGTGGCGCACTGGTTTTCGATGTCGCAGACCTTGTCAAGGATGCTTATGTGATGCCGTTGGCATTTGAATGCGGCACGAACCACAAGACAACGGACCAGGAGTTTCGCGCAAGACTGATCGAGACGGCTCACGATGCCAGCGTTCTTGATGCCTTGTTTGACTTCGTCAAAGACCTTGCTTATTTTTAACAACGAAAACAAAGGCATAGCTGACGACCCAAAAATGAAATAATTTTGGCTAAAAATCAACTATCTGTTTGTTTTAGCGAGAAAAAGAATTTTTTCTCGTCA # Right flank : CGGGGAGCACTGCCTTCACACGGCAGGGGTCGTTCGCCGCCGCCGGAAACTGCCCGGCGAGTTCGTCTATTGAGCGCCTGAGATGAGTCAGCGGGTGAAAGGTTTTAAACCGCTTTCCGCGCCAGCGCGACCGTATAATGCGCGCCCTGTTTGAGTTTGTCGTAGTTACCGAAAACCTCAGTCAGGTTGCGTTTCATGTACTGGCGCAAACCATTGATGGTGACCAGATAGAGCCGACCGCCGGGACGCAGACGCGCCTGGGCGTCATGGAGCAGGATCGCCAGCAGCTCCTTGCCAACCTTGGCCGGGACATTGCTGGCGATCAGATCGAAGCGCAGCCCCAGCTCGATCTGGTCGAAACCATTGCTGAGTTGCGCCGTTGCATTGGTCAGTCCATTGAGTCGGGCATTGCGATTGGCGTAGTCGATGGCGACGAAATCCTTGTCCACCATCAGCGTCCGGCCCTGCGGCGCCAGGGTCGCCAGCGTCAGACCAATCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCGCCGCGCAGGCGGTTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 101443-101983 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAO01000005.1 Thiobaca trueperi strain DSM 13587 Ga0244666_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 101443 37 100.0 35 ..................................... AGACTAAACAGCTTTCACTCGATAAATCAAAGATT 101515 37 100.0 35 ..................................... GAGCGTGATGGTTTGCCACACCGCCAGCTCATCAC 101587 37 100.0 37 ..................................... CTGCTGCGTTGATGGCCGCCGCTGCGGCGTCGGCGGC 101661 37 100.0 33 ..................................... CCCAAGCTGTCGATCAAGGGCAAGTCCTGGACC 101731 37 100.0 34 ..................................... AACCGAATCGCGCAGCCCCGTCGGCTGCGACGGC 101802 37 100.0 35 ..................................... TTGTCGGCGACCTTGATCTTTACGCCATGCGCGGT 101874 37 97.3 35 ....................................A GACACTGCCGGGGCGCTCAGGCCATCAAGCAGATG 101946 37 83.8 0 ...............T....AC.......AC....C. | G [101974] ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 97.6 35 GTTTCATCCCACTCTGCGGAGTGGGCTTCGTTGAAGG # Left flank : CGGCGCGCATCGATGCCAGCGCGTCCGACAAGGCCGTCACCTCGGCGACGAAGTTCGGGGTCTTGGGCGCCTATTGGCTCGCCTGGGAATCGCTGCCGTTCTGGCCGATGGTCAACGGCCAGACGCTCGGCATGACCCGTCAGCACTGGACGTATCCCACCTGCACCAACTGGCTCGGCGCAGAGGGTCTGCGCGCCTTGATCCTGGGCGCAGCGGCGCTGGACGAACGGGAAACGGCGGCCCTCGGTCTGACGCGCTGGCGCTCGGCACGGATCAGAAGCAGCGACTACGGGGTGGTGTTGGGATGGTCTGTCCCACTGTCCGCGCGAACCGCAAGTGACCGCGAAAAGTCCGGGGGATTCGCGCGAACAAAAAAATCTTTTAAGTCAAATGCTTGAGGTCGATCATCGCGGCCATCGATCAAAGCTGGTATCCGGTTTGCGCGGGTTCGCGCAACGAGATGGATTTTGGCTATCGAATCAGATCGCTATGGATGGGCG # Right flank : GAACAGGCACGACCCTGCAATCCACCGCGAGACGCAAAATCGTCATCAGACGTTCATGTCTCAGCAAGACTTTTTCCCTACATTAAGCCGCGTTCAGAGCGAGAGGCCGAGTGTCGAGTGAATTCGATGTTTGGCGGATCCACGGCCCTTGGCTGGGTGCGGTTTAGCCGCGACGAATCCTGGTCTGCGCTCTGCCCTCAATCCTGGTCTGCCTGACCCGCTCATCCCGTGTGAGACGGCAGGATGACAGATCCTTTTCCGCACTGAGAGTCCGGTTGCAGGTCCAACCCTCTCTCTGCCGTCACACAGTGAAACGGTATGACAGCCACCAACCTTCAGAATTCGCGCGCCCAACAGATGTCCCTCCTGTGGCGCCTGAAGATGGAGATCGAAAAAGCGCCCGCAGGAAGCACGCCGGGGATCCAATACATCCATTTCAACGCGCTTCGCACCGATAAGACCTATCGCGCCGAGATCATCGAACAGGCGCTCCAGTCCCA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCCCACTCTGCGGAGTGGGCTTCGTTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 82917-88572 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAO01000006.1 Thiobaca trueperi strain DSM 13587 Ga0244666_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================== ================== 82917 28 89.3 138 ..............G.....A.....G. GTGGTTTTGCCCCTTTTTTTCATGGTCACGAACGAATTTTGAAAATCAGTCGGTTAGAAGCGGCCCGAAAAATGGGTGAAATCGGCTGTTTTCAGGAATGTTCTTTAAAAAATAAGGGCTTGAAATGATGTGCATCTA 83083 28 100.0 32 ............................ CCCTTCGGCGAGCGCTGGCCTGATCTGGCGGA 83143 28 100.0 32 ............................ TTCCCGGAAGCGGGCGACATACCCGGTCAGCC 83203 28 100.0 32 ............................ TGATGAAAGTCGCCATCGGCGCGCTGTCGGGC 83263 28 100.0 32 ............................ TGGGGCAACGTCACCGCCCGTCAGCGCGGGTA 83323 28 100.0 32 ............................ TCGTGCTGTTCGTTGGCCTGCTCGATCTGCGC 83383 28 100.0 32 ............................ TTGCCGCCGAACAGCATCGTCCCGAGCAGCGA 83443 28 100.0 32 ............................ TCAGTCCCGAATAGACACTCACCGATAGCCGT 83503 28 100.0 32 ............................ TGGAGCGCGGCGAGCTGCGCCTTAAGCGCGTC 83563 28 100.0 32 ............................ GTTCGGGAACATGACCCTGATTGAGCGCGGCT 83623 28 100.0 32 ............................ GTCGGCATCACGCGCGCATTCACCGGACCTGG 83683 28 100.0 32 ............................ TCAGCCAGCGCGAGCTGGACGCGCGCGGGCTC 83743 28 100.0 32 ............................ AACACGTCCAGGCCTGTTTCAGCAATGAACGG 83803 28 100.0 32 ............................ TATCAGGACGAGCGACGCCAGAAATTTTCTGC 83863 28 100.0 32 ............................ AAAGGGCGACCGCTCGTTCTCGAACGCGTCCT 83923 28 100.0 32 ............................ TCGATGCGGCTTGGCCGGATGCGCTGGAGGTG 83983 28 100.0 32 ............................ TGATGGGCGCAGCAATACCCAGGTCGGTTATC 84043 28 100.0 31 ............................ TGGCGCTGCGCCAGGTCGCCAAACAATCCGA 84102 28 100.0 32 ............................ TGAAACATTGGGCGCCGCGCCCGACCCGGCGC 84162 28 100.0 32 ............................ ATGGAAAAATTGTTGCTGCTTTGGTTCCATAG 84222 28 96.4 32 ..........A................. TGGGTGCGCGGCATCGAATCCGGGATTGAGAG 84282 28 100.0 32 ............................ TCTCCACGTCAATGCATTCGCTGGTGATGGGA 84342 28 100.0 32 ............................ ATTAAAGATTCGGGCCAAGTACAAGAAACACA 84402 28 100.0 32 ............................ ACCAGCAGCACGAATGGCGATCCGACGTCGTC 84462 28 100.0 32 ............................ TAACCGCGCCGGCGAAAGCCTCGCCGCAGCAA 84522 28 100.0 32 ............................ TGGTAGAACCTCCTCGGCAGCGCCTCTTTGCA 84582 28 100.0 32 ............................ GCTCCGCGCTGCGCCCGACTCAACATCGCCAC 84642 28 100.0 32 ............................ ATCAGGCAGCAGGATGCGGACTGGATTCAGCC 84702 28 100.0 32 ............................ AACTGCTACATCCTGCCCGTCAACCGTGACGA 84762 28 100.0 32 ............................ GCATCCTCCGCGCACCGCGTCTGCGAAAACGT 84822 28 100.0 32 ............................ GCGCCCAGCAATTCAGTTGCCACCGTCTCCAC 84882 28 100.0 32 ............................ GCGTATCTAAGGGGACTGACCATGCTCATCAA 84942 28 100.0 32 ............................ GCGCACGGACCCGTCACGACGTGCCGATTAAC 85002 28 100.0 32 ............................ GAACTGCTGGCGCAGTTGCGCGCCAGCCATCC 85062 28 100.0 32 ............................ AACCCCTACCGGATCGGCGGCGCGCAGGCGAT 85122 28 100.0 33 ............................ GTCACCAAGGCCGGGGCGGATGCGACCTACTCC 85183 28 100.0 32 ............................ AGCTCACGGCTGCGCCGGGCGATCCGGCAGAC 85243 28 100.0 32 ............................ ACAATACTGACCCAGGCCGCGACGGGGATAAC 85303 28 100.0 32 ............................ TTCGCTATCTGGAGTGCGATCCGCGCGTTGCG 85363 28 100.0 32 ............................ TTGCAGCGGCAGCGCGAGAGCGGGCGCGGGGA 85423 28 100.0 32 ............................ TCCAAGACCTTCCCGGATCATCTTGCGGACAA 85483 28 100.0 32 ............................ GTGATACTGTTTTCGAGCGCCTTCACGCTCTC 85543 28 100.0 32 ............................ TGCAACACGACGGCGGGCGGATGCGCGCCGCA 85603 28 100.0 32 ............................ ATCACCCGCATGGGCGAGGCGCTGTGCGACAA 85663 28 100.0 32 ............................ TCAGTACGGCATCTGCGTGCATTCGACATCAC 85723 28 100.0 32 ............................ AGCGCGAGAGGTGAGTGCCATTGCCGCCATGG 85783 28 100.0 32 ............................ AACGCCGCCTGTTATCTGCGCAGCAGCAAAGA 85843 28 100.0 32 ............................ ATTGACCCGGACCACATGATGCACTTCGTCGA 85903 28 100.0 32 ............................ ATCGATGAGCCCGGCCTGGCGCAGACGACGGG 85963 28 96.4 32 ......................T..... GTCATGATCGATCCCGCCGCCGGACCCTGGGA 86023 28 100.0 32 ............................ TCGCGCTCGACACCAGCCGCATCGCCCGCCGT 86083 28 100.0 32 ............................ TGGTTCGGCGTCGGCAAAAAGGGCTCTCGCGC 86143 28 100.0 32 ............................ TGATGCGGTTTGAGCGCGGCGATCAGCGGGGC 86203 28 100.0 32 ............................ GAGGGCTGGATGGGTGCGCCCGGCAACGGGCG 86263 28 100.0 32 ............................ ATTGACCCGGACCACATGATGCACTTCGTCGA 86323 28 100.0 32 ............................ TTATGGTCGGCGAACACCCGGCTCGTTTCTGC 86383 28 100.0 32 ............................ TGTTGGGCGCGGGGATCGGGCAATACAGAGCG 86443 28 100.0 33 ............................ CTGGGCGTTGGATGGATCAATCTGGTTTCAGGA 86504 28 100.0 32 ............................ CTGGCGGACGGATTTCGGGCGGGCTCCTGGTC 86564 28 100.0 32 ............................ TGATCGAGCCCGACGATGCGCAGCTTGATCAC 86624 28 100.0 33 ............................ GACCAAGGGCATCGGGTCAGCGCGAGCAAGGGC 86685 28 100.0 32 ............................ AGCGGACAGCACCAGGGCGCCCTGCTCGTCGA 86745 28 100.0 32 ............................ GATCCGCTGTGGTACGAGCGGGCGCGGCAGGT 86805 28 100.0 32 ............................ CTGCATCGGCACAATCAGCCGGGTCCATTTCG 86865 28 100.0 32 ............................ GCTTCTGCCGGCATGCGCAGATCATCAATCAC 86925 28 100.0 32 ............................ AGACGCGATTGACGCCAGCGCGCCGCGCCGTC 86985 28 100.0 32 ............................ TGATCCGGTCAATCCATTCGATGTCGCCCTGC 87045 28 100.0 32 ............................ GTGCGCGGATCGGGCGCATAGGAATCGAGCAC 87105 28 100.0 32 ............................ ATGCCGATGCTGATGGTACGCCGGCCCCGTTC 87165 28 100.0 32 ............................ ATCGCCAGGGCGATAAACGGATCGCTTTTCCC 87225 28 100.0 32 ............................ TTCAGCCCGCGCGCCCGCAATCCGTCATCCAG 87285 28 100.0 32 ............................ CTAGCGCTTGAAGCTGCAATGGATGGGCAGTT 87345 28 100.0 32 ............................ AGGAAGCACTCGATGTTTTTCGGGTCGCGCAA 87405 28 100.0 32 ............................ AGCCGCCTTGCGCACGGCCCAGCGCAGCGCCT 87465 28 100.0 32 ............................ TTTTGGATGGCCGCCAACGTCTCGGCATCGGG 87525 28 100.0 32 ............................ GGCTGGCCGGGGCGGGGATTGCAGAGCATCAG 87585 28 100.0 32 ............................ ACCTGCACCCCAGCCGCCCGCGCCCACTCCGC 87645 28 100.0 32 ............................ TGCTATCGCACGATGGTGCGGGTGCTGATGTC 87705 28 100.0 32 ............................ GTTCGCGGAGAGCCGCGTCTGCGCTGACGAAC 87765 28 100.0 32 ............................ ATGTTCGCGCACGCTGGATAAACGCCTTTTCG 87825 28 100.0 32 ............................ ATCTGGCGTGGCTCGACGAACAGGGCGCCCTG 87885 28 100.0 32 ............................ TTGAGCTGGACGTCCCCGCTCAGTCCCGATTC 87945 28 100.0 32 ............................ GATGGCCGACGCCGAGGCGACCAGCACATCGT 88005 28 100.0 32 ............................ TGACGGACGAGATGCTGGAAGCCGCCAAGGAT 88065 28 100.0 32 ............................ GAGTTGAGCGAGGAACTGATCGCGGCTTATGA 88125 28 100.0 32 ............................ GACCAGCAGAGCCGATTATTTCGCTCGCGTCG 88185 28 100.0 32 ............................ GTCGTGAGCCAATCACTCATGATCGCCTCCCT 88245 28 100.0 32 ............................ GCATCGTACCAGGCGCAATGGGTCGCGGCGGT 88305 28 100.0 32 ............................ GCATCGGCGCAGAACAGTCGCCGCGCTATGCG 88365 28 100.0 32 ............................ GTTAAGCGGGCTGGGCCGCACCATTGCGCCTG 88425 28 100.0 32 ............................ TGATTCAGCAACCGGACGCGCCACCCGCGTTC 88485 28 100.0 32 ............................ ATTTCGGACGACCGGGTCGAGCGGCTGGATTT 88545 28 96.4 0 ....................A....... | ========== ====== ====== ====== ============================ ========================================================================================================================================== ================== 93 28 99.8 33 GTTCACTGCCGAATAGGCAGCTCAGAAA # Left flank : GCTCTTTGCCAAACTGCATCGCGGGCTTGTCGATCTGAGCAGTACGCGCATCGGTGTTAGCTTTCCCGGCATGCGCAAGGAACCAAAGAGCCGCAGCCTTGGTGAGCGTCTGCGAATTCATGGATCGCTCGCGGATTTGCGCGGGCTGATGGACCTGCCGTGGCTAACCGGGATGCGGGATCACATCCTGTTTCAGGGACCGGAGCCAATCCCGGATCAGGTCAGCGATTGCAGGGTTCGGCGCGTGCAGGCGAAAAGCAGTCCGGAGCGGCTGCGTCGTCGTCTCATGCGTCGGCGGGGGATTGGCGAGGAAGCCGCGCGACAGTGCATTCCGGACGCTCTGGAAGTGCGTTTGGATCTGCCATTTGTCACGCTGAAGAGCCGAAGCACGGGGCAAACCTTTCGACTCTTCATCGAGCAGCAGGCGGTCAGTCAGAGCATCGCGGGCGAATTTAACAATTACGGGTTGAGTCTGACAGCAACTGTGCCCTGGTTTTGAC # Right flank : AGGGATGGCATCCACGCGCTCATCGAAGTGATGCCGACACGAACGATGATCTCGCCAAGTCGATCAGCCCAGTGATGCTGTATCAGACCCTGTTGAACTGGCTGCCGACGGCATGACCTCAGCGTTTGGCGAGCACCTCCAGCAGCCGCGTTGCCTCTTTGCCGATGTCGCTGGCGGGATCCAGGTCGCGGGCCTTTTCCAGTGCGGATCTGGCCTCGTCCGGATTCCCCGACTGGAGATTGATGAAACCGAGCGTCAGCCAGGGGCGTTGCAGCGCCGGCCCCTTGGCGACGGCGTTCTTCAAGCTCGCGATGGCCCCGGCGTTATCGCCGCTGTAATGCAGCGCCAGTCCCAGATTGTTGTGCACCTCGGCGTCGTCGGGGTTCAGCTCGATCAGTCGCCGATAGATCTGCGCCGCTTCGGCGTAACGCTGCTGCTGAAAGAGATCATCGGCGCGCTGGTGCAGCAGTTCCGGATTGGTTTCGACGATGGTGTCCGGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //