Array 1 825-2708 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXAM01000008.1 Neisseria meningitidis strain INS-Nm977 NODE_8_length_56860_cov_44.6372, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 825 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 891 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 957 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 1023 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 1089 36 97.2 30 ......................T............. CGATTTACCACCCATAAAACCACCTCAAAA 1155 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 1221 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 1287 36 100.0 30 .................................... ATAAAAAATAAAAAAAACCAAAAATAATAG 1353 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1419 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 1485 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 1551 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 1617 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 1683 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 1749 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 1815 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 1881 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 1947 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 2013 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 2079 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 2145 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGTCGGAAAAATCC 2211 36 100.0 30 .................................... CTGAAGCTGATGAACGAGCACGTTTTGTGG 2277 36 100.0 30 .................................... CGTAGGGATGTGTGTTAAATCTACCGTTTT 2343 36 100.0 30 .................................... CGCCCCCATGCTGATGGTGCGCCTCGCCGA 2409 36 100.0 30 .................................... ACATCTTCGCCGACATAACCTGCTTCGGTC 2475 36 100.0 30 .................................... CGCCGAAGCCGCCCCAGTAGGCTTTGGGTG 2541 36 100.0 30 .................................... ACCATACCCGAAGTGGAAACGGTTACGCGG 2607 36 100.0 30 .................................... ATCGTTTACAATGGTTTCAGTTGCGTGTTT 2673 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCTGGAAGAAGGTGCTCATGGAAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGAATTTTGGGGGATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TTTCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //