Array 1 156342-157774 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVB01000012.1 Riemerella anatipestifer strain RA-JLLY contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 156342 47 100.0 30 ............................................... TTGTAAAATACATTCCTGAATATGTAAGTA 156419 47 100.0 30 ............................................... TGGACAGGTGGAAGGCATACAAGAGGAGCT 156496 47 100.0 30 ............................................... AAACTTCCAATAGATACTTCATGCTGTACC 156573 47 100.0 30 ............................................... ACAGCTGGAGGCTTTGAATTTCCTAACGGT 156650 47 100.0 30 ............................................... GAGGCTAAAAACAAAAAGAAACTATTTGAT 156727 47 100.0 30 ............................................... TATTTGCATTTCATTAACAATGACAACATT 156804 47 100.0 30 ............................................... CATCATTTAATCCTTTTCTTAATACCGATG 156881 47 100.0 30 ............................................... AGAAAAACAACTATTGGGGGATACGGAGGG 156958 47 100.0 30 ............................................... TTCGCCACTAAAATATAACAGCTCTCTATT 157035 47 100.0 30 ............................................... GAACATTTACAACATAAAAGTCAATTTGGT 157112 47 100.0 30 ............................................... ATTTGCAAAGTAAAAAAGTAAGTGTTATTT 157189 47 100.0 30 ............................................... TTAAATATTCCTGTTAGAGACTTATTCACT 157266 47 100.0 30 ............................................... GCCCGTACTGTAAATTGCGACAAGCGAAAT 157343 47 100.0 30 ............................................... ATGACAGGCGGTCAGAGTTTTTCCTGTTCC 157420 47 100.0 30 ............................................... TAGGATTATAATCATTAGCGTGTACCGTTT 157497 47 100.0 30 ............................................... CGCATTGCTTGATGCTTTTAAAACTTGTCT 157574 47 100.0 30 ............................................... TTTGCTGATTATAATTGTTCGTACCACCTT 157651 47 100.0 30 ............................................... TAGCAGTAAATAATACTGCGAAAGTGTTTG 157728 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 19 47 100.0 30 GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC # Left flank : TCTTTGTGGTAGTTTGTAGCTTAAATTTATTTTTTATGAAGTTAGATTTTGAGTTCAAAATCAGTTTATGAAAATGAAAAAGGCTTTAAGTTTGTTGCGAAACTTAAAGCCGAGATGAAACAGAAAATTCCCAGTCTGTTATATCCTGAAACAAAGGAGGCTTTGTCCCCCTTACTTCTAAAGGCAAATTTAGAAATATTTTTTCAAATGAAAGAATTTATAAAATTGATTAAAAATATTTTCTCGAAAGAACCATTTGAGCAAGATATAACTATTAGATTTAGTTTATCTTTAGAGCAGATAATATTTATTATTTTAGCTTTAGCAGGAATGATATACATCTTCTTAAAATAATATTATGAAAATAGAAGATATACATACCTCGTGGATACAGGAACAGATAAAAGAGCTAGGTGTTAAACGAAAAGACCTAACAAAAGACCTGTTACTAGATAGAAGTTATTTAAGCCATCTGTTTTCTAGTGATGACAAACCGCATA # Right flank : CCTCAAAAAATAAACCCATTGTTTTTCAATGGGTTTTGCGTTTTTATAGGATTAGATTTTCTACTATTTCTTCTCTATTTTTGTTTGATGTAAAGTCTTTTTCTATTCCTAAAAAAGTTCTAATTGCTGATAGGTTGGTTTGGGTTCTTCTTTAGCTCTCGCAAAGAAAATTTCTATATCTCCAAACTGTTTATCTGTAATACTCATGATAGCCACCTTACCGTGCTTGGGAAGTATTGATTTTACTCTTTTGATGTGTACTTCTGCATTTTCACGACTTGGACAATGCCTTATATAAATGGAAAATTGGAAAAGGCTAAAGCCATCGTCCTCTAAGCGTTTTCTAAAAAGTTGAGCTGCTTTCCGCATCGCTTTAGTTTCTGTTGGTAAATCATATAGCACCATAACCCACATAACTCTATAAGCATTAAAACGATTAAACTTCATAAAACTCAGGCACAGATATTTGTCTTTTTTCTCCAGTATAACATTTATAAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,4.5 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], //