Array 1 45138-44574 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVYU01000066.1 Neisseria meningitidis strain MRSN431264 MRSN431264_contig00066, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45137 36 100.0 30 .................................... TGCGGAAAGCCTCCATGCTTTGCAGCACTG 45071 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 45005 36 100.0 30 .................................... TTCTTCCCGATTGAGGTTGCTAGTTTTGTC 44939 36 100.0 30 .................................... AGTCAATGAATCACTAAAAGCCAAGTCAGA 44873 36 100.0 30 .................................... TTTTTCGATTTTTTATATTGAGCGTTTTTG 44807 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 44741 36 100.0 30 .................................... TGAATCGATATCGAGCCTGCCGGCGGGGGC 44675 36 100.0 30 .................................... AAACCGAGTTCAACCGCCACGTCGAAGACA 44609 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CCAAGATATATCAAAATTGTAGATGAAA # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 1056-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVYU01000067.1 Neisseria meningitidis strain MRSN431264 MRSN431264_contig00067, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1055 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 989 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 923 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 857 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 791 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA 725 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 659 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 593 36 100.0 30 .................................... GTCGCATGGTAAAATAACCACCGCTTTACA 527 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 461 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 395 36 97.2 30 ............A....................... TTTTGTGGAGTTTTGTTATGAGTGAGGGCA 329 36 100.0 30 .................................... AAGCATTGACGATATTTGTGTGGCGTTGCA 263 36 100.0 30 .................................... AAACGCCGGTAGGTTTCGTCTGTCTCCATA 197 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA 131 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA 65 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : TCATCAAATCATCCGCCGCGATTCGATCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA //