Array 1 433948-435755 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENQI010000001.1 Clostridium perfringens strain CHD32502R CHD32502R_seq1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 433948 30 100.0 36 .............................. TAGACTTTTGTAACCTCTTCTCTTGAGGTTACAAGT 434014 30 100.0 35 .............................. CAAAGTTGCTACATTTAATTAATAGATTATATGTC 434079 30 100.0 36 .............................. AGAATATAATAAAGGAATAGAAAGAAGATTAGAAGA 434145 30 100.0 35 .............................. TGGTAAACCTTGGACAGTTGCGGAATTATCTTATT 434210 30 100.0 36 .............................. TTTCTATTTTTTGAATGGTAAGAAAATTTAACATAG 434276 30 100.0 36 .............................. GCATATAAACCATTAGTGAAAATATTTATATTTTTA 434342 30 100.0 36 .............................. TTGAAAGGGTTTGAAAAATGTTGCTCTATATAAAGC 434408 30 100.0 36 .............................. GCTTTAGAGATTACTTATTTTAATGAGAGGAATAAG 434474 30 100.0 35 .............................. GTTAATACACCTTTATAAAAAATTTGTGGGGCTGG 434539 30 100.0 36 .............................. TTGAGTGAAAATAAGCTTAGGAGGGTAAAAATGAGT 434605 30 100.0 36 .............................. GAATGAAGAGTTATCAGTTTCAACTAAGAAAAAGAA 434671 30 100.0 36 .............................. GAATAAAGATAATATTCATATTAGTATGGTAGACCA 434737 30 100.0 35 .............................. TACGCCCCTAGCTCATTGATTGTAAAAAATTTTGA 434802 30 100.0 34 .............................. CAAAGTGGTAGAAAAGATATAGAAAATGTTTGTG 434866 30 100.0 37 .............................. ATAAATCATTTTCTTTAAATTTATCAACAAACTGTTC 434933 30 100.0 35 .............................. AAACTGTTAGTATATCCTAACTTCTCCATTTCAAT 434998 30 100.0 36 .............................. GCTTATAGAGTGCATCGAATTTGCTAAAGAAATGTG 435064 30 100.0 36 .............................. TTTAAGATTATAAGCTCCCATATATATTCTTTAACC 435130 30 100.0 36 .............................. TTATTTGTTATTTATTGTTTGCTATTTTTAAGAATA 435196 30 100.0 36 .............................. TAGTAACTATAATTTAACATTTAATCTCCTACTTTC 435262 30 100.0 36 .............................. ATAGCTGAGATAATACTATTATTTATTTGCATGTTA 435328 30 100.0 36 .............................. GTTATAGATGGAGCTTCTACTAATTCTTATAAAGAA 435394 30 100.0 36 .............................. CTTTGTACGTTGTATTGCCTTGAAAGAGGCACACGA 435460 30 100.0 36 .............................. TTATTGAAAAGTTTCAACTTGGAGCATATAAAGACT 435526 30 100.0 36 .............................. GCTACTTTTCTAGCATTCTCAGCTTCTTCAAAAGCA 435592 30 96.7 36 ...............A.............. TAGATGTAATGATTATTCTTATTCTCATACATTTAT 435658 30 93.3 36 ............A...G............. TGTTCTATGGCCTTTATTTCTATAAGTTCATCTCTA 435724 30 93.3 0 .......C......G............... | TT [435747] ========== ====== ====== ====== ============================== ===================================== ================== 28 30 99.4 36 ATTGAACTTTAACATGATATGTATTTAAAT # Left flank : AAACTTTTTCATAACAATATACCTCCTTTAAAATAAAAAAGCCAGAGAAATATTATAAAAATATCTCCCAGGCTTTTATCCTTCCGTGTTCACAGTTTATCTGTGCGTTTTCTCTTGGACCAGACTAACTAAAAAGCTACGGAACCCTAGAAAACTTTATATTATTAAACTTTAATTAACAAATTCAAAATTATAAGTTAATTTTAGCATAGTATAAATGCTAAATCAATTCACTGATAAAAATTTGAAGCTTACTGAATAGGTGAATTTTAGTATTTAATTAATGCATTCATTAGAAACATTTATAAATACACAAATAAAATTTTACCAGCCTAAAATTATATGAAATTACCCTTTAGACCTTGAAATAACTAGATTATAAGTTGATTTTATATTAGTGCTTTAAATTAAAGTAAAACACTGGTAAAATAATAAGAGAGATATTGAAATAACTAACTTAAAGATAAATATCAAGAAAAAGAAATGGCTATTTTACAAGC # Right flank : TAAGAACTTTAAATATTAAATTGTTGAAATAGGCATATTGCGATTACTTTTTCTAAGCTGATTAAAATACTTTTATTATTAACTAACATTTTATTAAATAATTAATATTACAAAAATATATAAATTTATAAAATAATTATTTGTTTTACAAAATTTGTTGGGTGAAAATTGAAATTATAACTATAATATGTAATATTTTTGTAAGATGAAAAGAAAAAATGCTTTAAAATATTAAAATGATTAAAAGATAAATTTTGTAAAAATAGTTTTTATTGGTATAATTAAAACATCAAATGTATTTAATTTATATAATAAAGTTTTTAATAACTCGTGGAGTATTTAAAGAATGTATTTAATGCATAAAATATTTTAACCATAACATTAGATGTACTAAACAAAAGATAAACTAAATTATTTGAGTTTTCAATTAATTATTTAAAATCAATTTTAATAAAAATAAAGTAGAGTTTTTATAAGGAGGTGAGTATGGTGAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACTTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 446092-448279 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENQI010000001.1 Clostridium perfringens strain CHD32502R CHD32502R_seq1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 446092 30 100.0 35 .............................. CTTTCCCACATTTAACTACCTGTAAAATTTCTTTT 446157 30 100.0 36 .............................. GACCATATTTTTTTCTTCGCTCTTCTTGCCATTTAG 446223 30 100.0 34 .............................. CTAATACCACCAAATACAAAATTAATACCTTCTG 446287 30 100.0 36 .............................. TATTTATAAATCTGAAAGAACGAACAGGATTACTTG 446353 30 100.0 36 .............................. TTAAGTATAATGGATTATTTAAATGGAGAAACTGGA 446419 30 100.0 36 .............................. CATATACGGTTCGCTAGTAGCGAAAAAGTTCGACAT 446485 30 100.0 35 .............................. TGCTTTAGCCTATATATAACATCTTTTATCCTGTC 446550 30 100.0 36 .............................. AAAATTAAAAGAAGAAAAGAGGTTAAGAGAAAAATG 446616 30 100.0 36 .............................. ATTGGAAAAAAGATGGACAACACATAGGTGGTTTAA 446682 30 100.0 36 .............................. AATAAACTCTAGGAGGGACTTGTATGAAAAAAATAG 446748 30 100.0 35 .............................. AATGATACTGGAAAAGAGCTAAATGATATTACTGA 446813 30 100.0 35 .............................. TATTTTATAAGAAAAAGTATTTTAGAAGCTGTCGT 446878 30 100.0 34 .............................. TTAGAAGAACTTATATATGATGTAATGAAACAAG 446942 30 100.0 35 .............................. ATATTTTCTCCCTCCGGATTTATACACTTACTATC 447007 30 100.0 36 .............................. CAACTTTGGTTAACTATATTTATGTTTTCTATAAAG 447073 30 100.0 34 .............................. GTTGCTTTTATTTGCATATAAGTATTTCCATTAT 447137 30 100.0 36 .............................. GTAATAGTTATTTTTGGAGCTAAGAACTTAATAGCT 447203 30 100.0 36 .............................. ACAAAATAAAATATTACAATAAATTGATTTAATAAC 447269 30 100.0 34 .............................. TTTGGATCCAAAACTTCTTGAATCCAAGCAACTA 447333 30 100.0 35 .............................. TGTTCAACCCAGTAAGTAAAGCAAATTGGGTTTAT 447398 30 96.7 36 .......T...................... ATTAATTTACAATATGTAGATGGTTTACCTGGTTAT 447464 30 100.0 36 .............................. ATGTATTGTCCACTTGCTAAAATTTGGTTTCTTCTT 447530 30 100.0 36 .............................. TCTTTAAAGAATGGACTAGCTAAATAAACTTTCTTT 447596 30 96.7 36 ..............G............... TCTGTTATATTTATATATCTATCTTTTAATCTTAGA 447662 30 100.0 35 .............................. TCAGCTCCCTCTTGCTTACCGGCTATACTGAAACT 447727 30 100.0 35 .............................. CTTCTTTCTCCTCCTAAAGCTTCCATTACTTTTAT 447792 30 100.0 36 .............................. TTAAAAGAATATTGTGATGTAATACCTGTTACAAAG 447858 30 100.0 35 .............................. GATACATCCTCATATCTACTTCCAACTGTTTTCTG 447923 30 100.0 36 .............................. AATTTTAAGTGTTATGGAAATAATGCAAGATAGTGA 447989 30 100.0 34 .............................. TTTGGTACCGTTGAAATAACTACCCTAGGTCCTG 448053 30 96.7 35 ......G....................... AAATGACTGTGTGCTCCTTTACTATTTCCGGTATT 448118 30 100.0 36 .............................. GATAATCCAAAAGATGTTTTTAGAAGAGTTAAGCAT 448184 30 100.0 36 .............................. TATACATATTTATTAAAAACTATCCAATAATTCAAT 448250 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 34 30 99.7 35 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : GTAAGATATGAAAAGTAAAATGAATTATAATTATGCTTTTGTATTTTATGATGTAAATGAAAAGAGGGTAAATAGGGTGTTTAAAGTTTGTAAGAAGTATTTATCTCATTTTCAAAAATCAGTTTTTAGGGGAGAAATAACCCCTGCTAATCTTATAAACTTAAGAAAGGATTTAAATAAAGTAATAGAAAAAGATGAAGACTTCATATGTATTGTTAAATTATTAAACGGAAATGTATTTGGAGAAGAAGTGCTAGGGATTCAAGAAGTAATTAATGGGGAAACACTGATACTTTAATAATTAATTCAAAATAACATATAATTTTACCAGTGATTTAAGTGGGAAAAAGTTTGCGAAACACTTGAAACAACTAAGTTTTAGACTGATTTTCGATATCCTCTTTAATTCTTAATAAAACACTGGTAAAATTATAGTATAAGTATTGAAATAACTAGATTAAGATATATTTATTAAATTTAAAAATGGCTATTTTACAAGC # Right flank : TATTAATACTGAATTCACTAAAAATTAAGTAACTAATTTATATTGTTTTTCAGTATAATATAATTACTTAATGTCTTTCTATATAAAGTTTTATAATTAAGTAGGGGTATAATATGAAAAAACTAGCTTTTATTATAAAAAATATTTTGAAATTCTGGTGGTGGCAAGATATAGAAAAATCTAATATTTTTATAAGGGTTATGAATCTTGGAATGGCTTTATTTTTAAGCTTTTGTTTCTTAGCATGGATGTATGGAGAAAGCTTTAATATTATATTAAGATCATTTATAAGTATTTATGGAGTTCTATGTTTCATGTCTTTTTGGCCAGTTTCATATTTATTTGATGAAAAGGACAAGGTAAAAGGAAGTACATTTTACATATTTCAAAATATTTCAGTATTTTGCTCTATTATTGTATTAATTATTTATATATTAAAGAATTATGATAGAGTTAAAAGCTAGTAATATAATCGAAAGCAATATAATTTTAAAAATATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //