Array 1 123692-123128 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRJ010000027.1 Streptococcus thermophilus strain Vach57 Contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 123691 36 100.0 30 .................................... TAAATAATAAAGTTTTCTACCAAGATAATT 123625 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 123559 36 100.0 30 .................................... ATAAGCTGAGAAAGTATATGTTCCGTCTTT 123493 36 100.0 30 .................................... GACCATCCACAAGGGAATAGTGTTGGTCGT 123427 36 100.0 30 .................................... ATCAAGGTTGTTAAATTCAAAAGCTACTGT 123361 36 100.0 30 .................................... GTTCGTAAATTCGGAAACTAGCACATTAAA 123295 36 100.0 30 .................................... CTTCTTAAAATTGAATAATTCGAAGTACAT 123229 36 100.0 30 .................................... TTCTAAGTCAAAAGAATATGATGCTAGTGG 123163 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GCGATAAATACACTCTATACAGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 27832-28922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRJ010000010.1 Streptococcus thermophilus strain Vach57 Contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 27832 36 100.0 30 .................................... ATTTTCCTCCAACCTAAAGCGGTTGTTCCT 27898 36 100.0 30 .................................... CAATCACGTTCTCGTCAGGCAATGAAACAG 27964 36 100.0 30 .................................... AGAACCCAGAAAGGAACACCAAACAAGGAT 28030 36 100.0 30 .................................... AATCTGGCAGATATGTGACAAGATGGGTAT 28096 36 100.0 30 .................................... TCTAACGCGCGTGGTTCTTTTAGCCCTATA 28162 36 100.0 30 .................................... TAAATGTGTAGTTATTATTAACAATATTTA 28228 36 100.0 30 .................................... AGCACTTGATAAATTTATGTTAAGATGTAT 28294 36 100.0 30 .................................... GATAAGGGTTAGAAATCCAAAACAAGAACC 28360 36 100.0 30 .................................... TCAAAGAAATTAAAACCAATAATGTATCAT 28426 36 100.0 29 .................................... TTGGGAGCTTGTCAGTGAATACGCTGAAA 28491 36 100.0 30 .................................... TAGGTTGAAGAATAGAATTTTCACTTTTTA 28557 36 100.0 30 .................................... ATTTTTATGACAATGGGGTGCCTGTTGATA 28623 36 100.0 30 .................................... TACGGTCAAGCGTTTGTGACTCAATCAATA 28689 36 100.0 30 .................................... ATATTAGTAGATAGCAATGACATTTGTTGA 28755 36 100.0 30 .................................... AATGTGCTTAACATTTCTGATTGCGCCTTC 28821 36 100.0 30 .................................... TGCTTTCGTCAAAGGTTGAGTTCGCAATGC 28887 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAACATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACTAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATGTTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGAATTGACAAGGACAGTTATTGATTTTATAATCATTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTGAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGAGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 722-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRJ010000028.1 Streptococcus thermophilus strain Vach57 Contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 721 36 100.0 30 .................................... GGCCTCTGTTTACTATTCTTTCATAGTTGT 655 36 100.0 30 .................................... TTGTATCGGGTACTATCACTTTGCTCGGTT 589 36 100.0 30 .................................... CGAGATAGACGCTTTAAGCATAATGGAAGT 523 36 100.0 30 .................................... CGCTAAACATATTTACATAACCGAAGGTGT 457 36 100.0 30 .................................... GTGCGTCGTTTTCGACAAAATAGTTAAACA 391 36 100.0 30 .................................... ATATACTTCTTCTGGATTGATAAGACCTTG 325 36 100.0 30 .................................... CTATGATGATTGATAAAATAATCAAGGCAC 259 36 100.0 30 .................................... GATTTTAGCTACCATCCAGAGAGAATCTAA 193 36 100.0 30 .................................... TATGCTAAACGTACAAGTGAGAAAAATGGA 127 36 100.0 30 .................................... CAACCCAGACATGAATGTCATTCGATATGT 61 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAAAGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CGATCCCGTTTTCAAAATAATTAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //