Array 1 99-2281 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLGM01000127.1 Acinetobacter baumannii strain ABBL083 contig-2000037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 99 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 159 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 219 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 279 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 339 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 399 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 459 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 519 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 579 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 639 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 699 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 759 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 819 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 879 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 939 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 999 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 1059 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 1119 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 1179 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 1239 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 1299 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 1359 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 1419 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 1479 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 1539 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 1599 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 1659 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 1719 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 1779 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 1839 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 1899 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 1959 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 2019 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 2079 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 2134 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 2194 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 2255 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 98.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTAG # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5010-9540 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLGM01000338.1 Acinetobacter baumannii strain ABBL083 contig-79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5010 29 89.7 31 ....G.......CC............... TATTGTGAGCACCTTGATTGCTGTGCGCTGC 5070 29 89.7 31 ....G.......CC............... ACAGCGGGAAACTTGAAAGTCATTGCGAAAT 5130 29 89.7 31 ....G.......CC............... GATTGCCCCCTGAGGAAACTGTATAAAGTCC 5190 29 86.2 31 ....G.......CC..............A AACACCAACTAAGCCATTCCCTATTCAAAAA 5250 29 86.2 31 ....G.......CC..............A TGAACTTTTAATGGATGCATGCGCCGCCCAC 5310 29 86.2 31 ....G.......CC..............A CGAACAACGATAATTTGGAATACACGCTCAT 5370 29 89.7 31 ....G.......CC............... CAGGAGAAAGATCGTTCAAAAGCTCAAAACC 5430 29 89.7 31 ....G.......CC............... GAAAGTTTTGATATCCACTCTGCTGTTTCAA 5490 29 86.2 31 ....G.......CC..............A GATGGTAAGAAAATTATTGAGTCTGGAGACA 5550 29 86.2 31 ....G.......CC..............C GACAGTCCAGTTGATCAGATCTTGATTAGAC 5610 29 86.2 31 ....G.......CC..............A ATGACATGGTTCAACAATTAAATTCATCTCA 5670 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 5730 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 5790 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 5850 29 89.7 31 ....G.......CC............... TCTGCAATACAAATCACTGGATCAGCCAGGT 5910 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 5970 29 86.2 33 ....G.......CC..............C CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 6032 29 89.7 31 ....G.......CC............... ATGTCTTTAAATTCTGAAAAAACACTTGTTC 6092 29 86.2 31 ....G.......CC..............G AAAAAATTGAAAACTTTTTAGAAGTAAATGA 6152 29 86.2 31 ....G.......CC..............G CCACACATGCCTAAAAACGCAAGTGCGCTCG 6212 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 6272 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 6332 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 6392 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 6452 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 6512 29 89.7 31 ....G.......CC............... GGTACGACAACTACGAAAAGCTGAGCAAAGT 6572 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 6632 29 89.7 31 ....G.......CC............... TGATTGCTAGACGGATTTTTAGGCAGATCAT 6692 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 6752 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 6812 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 6872 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 6932 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 6992 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 7052 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 7112 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 7172 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 7232 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 7292 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 7352 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 7412 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 7472 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 7532 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 7592 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 7652 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 7712 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 7772 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 7832 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 7892 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 7952 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 8012 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 8072 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 8132 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 8192 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 8252 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 8312 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 8372 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 8432 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 8492 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 8552 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 8612 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 8672 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 8732 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 8792 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 8852 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 8912 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 8972 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 9032 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 9092 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 9152 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 9212 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 9272 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 9332 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 9392 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 9452 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 9512 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 76 29 93.2 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //