Array 1 662828-663853 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040412.1 Dolosigranulum pigrum strain KPL3250 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 662828 36 100.0 30 .................................... TGATTAGCTTACTTATTGTTAGGTTGAGAT 662894 36 100.0 30 .................................... ACAGCGGAGCTTGAGAAGTATCTGAATGGG 662960 36 100.0 30 .................................... GTGAGCAGAAGCGATTTGACTTATCGCTTT 663026 36 100.0 30 .................................... AATTGACGTTGGTGTGATGAGTGGCTTAAT 663092 36 100.0 30 .................................... GAATATATTAAAACATCAGGACAGGGGTAA 663158 36 100.0 30 .................................... GTCAGACCTCGTCAAGCCATCCATAGCTTT 663224 36 97.2 30 .............................T...... GTTGACAACTAAATTTAGATCTGATATACT 663290 36 100.0 30 .................................... TTTTATTCTTCGAATTAGTCATGCTATAAT 663356 36 100.0 30 .................................... TGATCGCCTGCTTTTGTTATCGTCTTCATC 663422 36 100.0 30 .................................... AAAAACTAGTTGACAACTTATGATTATAAT 663488 36 100.0 30 .................................... TTTCTTGTCAAGTACTTTTCTAAAATTTAT 663554 36 100.0 30 .................................... TATTCGTGTTGTGTATTGTTGAGTTGTTGT 663620 36 100.0 30 .................................... GCTAATATTGTGCTACCAAAGGCGGTGGCG 663686 36 100.0 30 .................................... AATCGTTAAAGAAGTACAGCGCGGTATTCG 663752 36 100.0 30 .................................... TCGCCTAATGCTTCATTAAAGCCGTCAATT 663818 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.8 30 GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Left flank : ACTAATCAAATTACTGAACTGATTAATGCAGAGGTACTGAATCATGAATTAGATTTAGAACTTGATGAAATTACAATCCAGGAAGTACTTATCGCTTTAGGAGTGAAGATAGAAGTTGATACAGATACACTATTTGAAAAGATGTTGGAAATTTTTCAAGTCTTTAAATATTTGCGAAACAAAAAGTTACTGATACTTGTAAATACAGCTTCATATTTTACAACCGAGGAGCTTAATGAAATGGCACAGTTTGTCTCATTGTTACAGATGAATGTGCTGATGATCGAACCAAAACTGACTGATGCCAATATTACACAATATATCCTGGATTCGGACTTCTTTTTAACCATCAAACATGGTAAAATGAAGTAGAAGATAAACTAGAAAAATAGGAGTCGTTTAAAGCTGAAGTTTTGCATGGACGAATGGCGCGATTACGAAATTTTGTGCAAATTTCTTTTTAAAAACCATGATTTTTTAGAAAAGAAATACTGTGCGAG # Right flank : CTTGTCCTAGCAGAATACTAGCTGATGTCTGTGAGCTAATTTAGCAGATGATCCCCTTGCTAGACTATGAACTGACTGCTCTTGACGTCGATACACGCGATTAAAAACTGAAAAATTGGATAAAAAAAGAAAAAAAGAAGGCGTTTAAAAAAAGGGGTGTTTTTTTATGATCAAGCTTTTTTTAGGAGTTTGACATAACCCAATAAAAAACAGGACTAAGACCAACTGAAAAGTTGGAAAGAAAAAAGACCCAACGCTAAAAGTGCGCTGAGCCTTGTGGTAAAAGCTTTTCTATTCATTTTCTGAGTTTGTCATATTTAGCATTAAGACAAACTGCCACTTTAAAAATTATAAGCTATCCAGCGACGCATAATACTAATAATGCACAATATCGACTACCAATTTTATTTTCTATACTTTATGAATATGGAATTTGCTACATAATTTAATTTTTATCTCTACAGTCCTTTTAGATATTTAAAAATTAAGGCTTGGCTCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 665751-666049 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040412.1 Dolosigranulum pigrum strain KPL3250 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 665751 36 100.0 30 .................................... GAAATTAGCCAGCTCGTCCACAGAGTAGCC 665817 36 100.0 30 .................................... TCTAGACGGGAATAAAGTGGTGGCTACATT 665883 36 100.0 30 .................................... TGAAGGATAAAGGTTACGCAAGAATATCAC 665949 36 100.0 30 .................................... TCGTTAGATGAGTTGAGTAAGTCCATCACC 666015 35 88.9 0 .........................A..-..T...T | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.8 30 GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Left flank : ATCAACTTTATCAGGCTATAAAATATGCGAAAATAAATAAAAATAATATGAATGATATAAGTTTTGAACAGTTTTTATCATTGTTTAATAGCTATAAATTGTTTAATGGATAAATCTAAAGGACTGCCTGAAAGCAGTCCTTTAGATTTATTTGTTGCATATAATACTACTAATGTTCATCAATTTTCAGTATTGAGTTTTACTCAATTCTTATTGTGACAAACTCATTTTCCCTTAAGTTTTTTAAAGCGTTCTAAACTTTTCTTAAATTTTATTTGAGCTTCTTCTGACATTGTATCATCAGTTTTCACTGGATCAGATGCCCACTCAGGCAAGTTTTCAATTTTTCTCTTACGTTTTTTATATTTATATTTCTTCGCCAGTCATAAAATTAATCATTGGTACTGGATTCGGATCTTCGTATTCTTTAAACCGAATAACGAAGCGTTGAATTTTATTTCCTTTTTTTGCTTTGATTTTTTCAATCGAAAGTTCATCAA # Right flank : TTGATTGTTCAGATAACTTATGAAATTTAGATATAGTGTATTGATTTTTGATGTAATAATTAATAAAACATATAATCTTGTTTAATTTTCTAGTCAAACTAGCTAATTAAATAGGATTTTTGTTTACTCAGGAGATAAGGTATTTGTGAAGTGTTTCCCGTGACTATTAGTCGAAATTGCAGGGGAAATATGCGATAATGTAGAGCAAGGAGTGATGGCTGTGAGTAAGGAATTGTTAGTATTGATTGATTATGAAGTGGATGTATTAGAGACGTTTCGAGAGATAGCTAGTGAGTATCAGTTGGTGAGTGAGTTTGAGGAAGCTGATTTTTCGAAGGTTGAGATCGTACTGGGTTGGGATGAGCGGTTAGTTGATGTGCTTGAGTCGGGTCAGCATCAATTGAAGTGGATTCAGTTATCGACAGCCGGCGTGGATAAGTTGCCACTTGATTTACTAGCGCAAGAGGGTGTGCGGTTGACCTCAGCAAGCGGGATGCATA # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //