Array 1 823406-828997 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCJF010000001.1 Chryseobacterium aquaticum strain C-174 Seq1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 823406 47 91.5 30 CACA........................................... TCTACGTTTACTATCGAGTTTGGAATACCC 823483 47 100.0 30 ............................................... TCTACGTTTACTATCGAGTTTGGAATACCC 823560 47 100.0 30 ............................................... CTGATAGTACCAATATTCAGCGATTTCAGT 823637 47 100.0 30 ............................................... GGATAAATTGTGCGCTTACAGGCACTCTGT 823714 47 100.0 30 ............................................... AATCAAAAACCTTCAACCCAGAGAAAACTT 823791 47 100.0 30 ............................................... TTGCATTACTTTTTTTTTAGTATTCGGATT 823868 47 100.0 30 ............................................... ACCGAAAGTGTTAAAGATTATAACAATGCA 823945 47 100.0 30 ............................................... CGTGACAATTAAAGGCTGCTGATAAAATAG 824022 47 100.0 30 ............................................... CTGAATTGTTGCAAGAAATTGCGATCATTG 824099 47 100.0 30 ............................................... TGCTTTACTTCCTGAATCAAACTCTGTTAC 824176 47 100.0 30 ............................................... CTTACAAGGCTATGGCAATTGCAGAAGCTA 824253 47 100.0 30 ............................................... CTCCTTCAAAAATAGTCATTGGACGAGGCG 824330 47 100.0 30 ............................................... TCTTGTGGAGTAGGAATAAATTTATGACGG 824407 47 100.0 30 ............................................... CTTCTGCCATGCCATCATCTCCTCCAGTCA 824484 47 100.0 30 ............................................... CTCCGATTCCCCCGCCTAAACCACCTGCGT 824561 47 100.0 30 ............................................... ACAGTAGTTGGAAAGCAATTCAACTTATAC 824638 47 100.0 30 ............................................... TTAGACTATATGGTTATTCATGCAGTATTC 824715 47 100.0 30 ............................................... AAAGCAAGGTTACACGATTACGACTCTTCA 824792 47 100.0 30 ............................................... GGAATGACCTGTGTAATCACCTCTATTATC 824869 47 100.0 30 ............................................... TGACGAAAGTGGTGTCAATGCGCACAACCT 824946 47 100.0 30 ............................................... ATATAACTCTTTTTGTCTTGCAGTCGTTCT 825023 47 100.0 30 ............................................... GAACAACCGTTATGTGCTTATGTTGAGTTT 825100 47 100.0 30 ............................................... TACGGATGGCCCATTGCTTATTATTCTCCG 825177 47 100.0 30 ............................................... AACTAAATTAATTTTCACCATTAGAGAAGT 825254 47 100.0 30 ............................................... CGATAACGCAGCCTTACTTCATGCTACACA 825331 47 100.0 30 ............................................... ATATCATATCCCGTGTCATTTGGATGAACA 825408 47 100.0 30 ............................................... GACTGCACCATTTGAGAACTGGAGGAGCTT 825485 47 100.0 30 ............................................... AGGATTTAAGAAAGCAGATTTAGAAAGTAT 825562 47 100.0 30 ............................................... TCTTACAGGCTCGATCTATCAACACAGGGA 825639 47 100.0 30 ............................................... TTTGATAAGGATACGGCGAAGTATCGGAAG 825716 47 100.0 30 ............................................... CTGATACAAATGTAAGAATAAAAACAAATA 825793 47 100.0 30 ............................................... AAGCCCCCATGATATTCTGTCTAAGATTCT 825870 47 100.0 30 ............................................... AAGAGAGGATTTAGCTAAAAGAGAAATTGA 825947 47 100.0 30 ............................................... CGGAAATGATGTAAGTTACTACGCATCAGT 826024 47 100.0 30 ............................................... AAAACCATATCATACTTTACGCCCGGATTG 826101 47 100.0 30 ............................................... CATGTCTATTGCTTCCCACAGCAGCATAGG 826178 47 100.0 30 ............................................... AATGCTTTCCATCCTATAAGAGACTATTTA 826255 47 100.0 30 ............................................... TATCAGATCTTAACTCTGCTTTGGCTGCTT 826332 47 100.0 30 ............................................... TTATAGAGATGTACAGCCTCCGCCCATATC 826409 47 100.0 30 ............................................... TTCAATTCTACTACAAACAAACGTAATTGT 826486 47 100.0 30 ............................................... AGTTGAAAAATTTATGTCTTGGCTTGACAA 826563 47 100.0 30 ............................................... TTACAGAAACTGCTAAAGAAGAGGATTACG 826640 47 100.0 30 ............................................... CGGAAATGATGTAAGTTACTACGCATCAGT 826717 47 100.0 30 ............................................... TGGTGTAGGGAGATATGCACCTCTTAGTTA 826794 47 100.0 30 ............................................... TTTATAATTACCAGGAATTAAATTAGAATG 826871 47 100.0 30 ............................................... GAATATTATCTGAATAGTCTCCAACAGGCA 826948 47 100.0 30 ............................................... TCAATGAATTCAAACGACTCTGCTATATTG 827025 47 100.0 30 ............................................... GTTTTAGATTATGAGCAGCTCACTCTGGAA 827102 47 100.0 30 ............................................... AAATCTTAAACAATGCAAAACAAGTTTAAA 827179 47 100.0 30 ............................................... GTAAATGATTTTAATTTGTTAGCCTGAGAG 827256 47 100.0 30 ............................................... CAAATCTGGGAATTACATCTAATAATACCG 827333 47 100.0 30 ............................................... ATATCATATCCCGTGTCATTTGGATGGACA 827410 47 100.0 30 ............................................... CTTTATCATTAATACAGGAGCAATATGCTG 827487 47 100.0 30 ............................................... GACAAAAGATGCTTTTAAATCAAAAATCTA 827564 47 100.0 30 ............................................... ATACGGAGAGTATTAAAAATGCTTTCTCTG 827641 47 100.0 30 ............................................... GGTCACTAAGAATTATTGTGCAAAAATAGA 827718 47 100.0 30 ............................................... ATGATAGGTTCATCCCCTCCATAACCATTA 827795 47 100.0 30 ............................................... AAAAAATAAAGCCATGATACGATCTCTGTA 827872 47 100.0 30 ............................................... AAAGCCTTCTGGTTAGAGTGAATAGGGTTA 827949 47 100.0 30 ............................................... AAGAGAGGAATTAGCTAAAAGAGAAATAGA 828026 47 100.0 30 ............................................... TATCGTGATTCTTTTCAGTGATACCCGGTT 828103 47 100.0 30 ............................................... GAAAATGAGGACATTAATTAAATTTTTTAA 828180 47 100.0 30 ............................................... TTTCCAAGCCGAAGGATTGTCGGGCTTTCT 828257 47 100.0 30 ............................................... TTGATAACCCTAATTACAAGTATCTGATTA 828334 47 100.0 30 ............................................... GCTATTTGGGTAGTAGAGGAGCAGGGATTT 828411 47 100.0 30 ............................................... GAGTAATTCTAAAGGATCTAGAATAATTAT 828488 47 100.0 31 ............................................... TTCCAAAGGGCGTTTTCCGAATAGATCGAAG 828566 47 100.0 30 ............................................... TGTTGTTTCTGAAATTATTACTTTCATATT 828643 47 100.0 30 ............................................... ATAAATTCACGAACTTCGACAACTTCCAAA 828720 47 100.0 30 ............................................... CATGATCAGCTTTGTAAGAAATCACTTTGT 828797 47 100.0 30 ............................................... AATTCTATAAATGCAAAATCTCCAAATCCT 828874 47 100.0 30 ............................................... GTGCATCCGATTCTGATATAACAGATAAGT 828951 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 73 47 99.9 30 GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATGACACAAC # Left flank : GATTCCGATCTTCATGACCGTGCAGACTGGCTCGATCCTGTCTATTGGTGCAGGAAGAGTATGCAAACGCGCTTTGTAAAACATCGTGTTCCTGTAAATCGGTACAAATATGCTTTGCCTATACAATATACCTCAGCAGGAAGCCAACATCTGGAATCTTATGCAGGTGAAGGTTGGTTAGCGGTGGGTGATGCAGCCTGTGCGTTTGATCCATTGTCCTCACATGGTATTGCTTTCGCTCTACGTAGTGGGATTGATGCGGGTATTACTGCCAAAAATGAACTGGAAGGTAATACAGAAGCCGGAAATCATTATGATCAAAACATCAGATTAGTTTTCAGTTTATATGAAAAACAACGTTCAATCCTCTATCAAAAAGAGACACGCTGGACTGACCATCAATATTGGGCAAGAAGACAACAAGAAGAAAATCAGCAATTGCTAATGACAATATAATTATATCACACTATTTATTTGAATGGTTTAGTAGTTCATTTACT # Right flank : CCTCAAAATTTAACCCTCTGTTTTTCAGAGGGTTTATTTTGTTTTCAGGATTTAAAATTCAGAACAATTCGAGTTGTTGGAAGGTCGGTGGCGGTTCTTCTTTATTTCTGGCAAAAAAGATTTCGATGTCTCCAAACTGCTTATCGGTAATGCACATAATGGCAACCTTTCCGGCTTTAGGAAGCATAAATTTTACTCTTTTGATATGAACTTCTGCATTTTCCCGGCTCGGACAGTGTCGTACATACATCGAAAACTGAAATAAAGTGAATCCGTCATCAATCAGTGCTTTCCGAAAACGGTTTGCATCTTTCATATTCGCTTTCGTTTCGGTCGGGAGGTCATATAATACTAAAACCCACATAATTCGGTATGCATTAAACCTTTCGGCGTTCATTTTTGGTGACTATTGTTTGTTTGTCGTAACGTTTGCAGCCCGACCTGAGTGGAGCTCTTTTTGCAGATTTTGGTGCTGGAAAAATGCGGTTGGAAATCTGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATGACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATTACACAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //