Array 1 15400-15611 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGC01000034.1 Lactobacillus helveticus strain IMAU50011 Scaffold34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15400 29 100.0 32 ............................. TGGACTTCAAATTATTATCAATCAGACTCTGG 15461 29 100.0 32 ............................. AACTCCGGAGCCAGAACTTCTAACCCAACTAC 15522 29 100.0 32 ............................. TGCTCTAAATTATCGTGATATTCTTGAACATC 15583 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTGAGTTAAAGCAGCATCCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTAATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATCGCTAACAGTATCGGCTTGAACGTGATTAGTAGAAACAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGCGTTTTAGAAGTTTTTAAATTAGGAAGGAAAAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : TCAGGTGTATAAGGCATTTAAGTATCTATAGTCTAATTATTTTAGAGCATAAAAAAAGACCCGCCAAAAAATAGCGAGTCCGTGTAAGGAGAATAAGAATGAAGGAGAGGTAAATCAGCCCTCGTTTCTTAGTTTATATTAGGAGTGTTAAAATGGCAAGAACTGAACCAGAAAAAAAAGCTCAAAAAAAATATTATTTGAAAAACAAAAATATGTACAAGATTAACTCCTATCGCTCAAGAGCTAAGAATTTCATTTTAAAGTATGCAACCACTGATGAGCTCATATGGCTTAGAGGCTTGATTGATGAAAGATTATCTAAAAAAAAAATTTGAAGTAGCAATAACTGATTGAGTTTGTTGGTATTCTCCACGTATGTGGAGGTGATCCTTAAGAGGGCGTCAGGTCAGTTTATACGGTCAAGTATTCTCCACGTATGTGGAGCAACCAAAAACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26013-23985 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGC01000006.1 Lactobacillus helveticus strain IMAU50011 Scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 26012 32 100.0 34 ................................ ATAAAGGTCTTTAAGACCAGTACCATTAGCAAAG 25946 32 100.0 34 ................................ TTGGTTACGACTCTGACAAAAGCAAGAAATCAGA 25880 32 100.0 35 ................................ TATTGAAAGTCTGACTAAGCAGCAACAAATTCAAG 25813 32 100.0 35 ................................ TATTGAAAGTCTGACTAAGCAGCAACAAATTCAAG 25746 32 100.0 33 ................................ AAATCAGAAGCTAAGCCAGGTGATCCTGTCTTT 25680 32 100.0 35 ................................ TTTTTCATATTTCTCAACGAGTTTTTTACGAATGT 25613 32 100.0 36 ................................ TTACAGATTCCTGCTTCGACTGAAAGTGTTGCTTTC 25545 32 100.0 34 ................................ TTAACGGAAGTATGGGGCTTTCCAAACATGCCAC 25479 32 100.0 34 ................................ TTAACGGAAGTATGGGGCTTTCCAAACATGCCAC 25413 32 100.0 34 ................................ GATTTGGTAGAAGGGCAAAATTACACAATTGGTA 25347 32 100.0 34 ................................ TTTTTTTACCTCCCTTAATCCTTACAATTTTTAT 25281 32 100.0 35 ................................ AATTATTGTCTAATAGTTTTTTACGATAATTGACC 25214 32 100.0 34 ................................ AAGTAATACCGCACTTACTTGGGCTGATCTTGGA 25148 32 100.0 34 ................................ AATATCTTCTAAGCTAGTATAAAACTCGTCATTT 25082 32 100.0 34 ................................ ACCCTGGAAAATACGCTTGCTATAACAGATATAC 25016 32 100.0 35 ................................ TCCCATGTTTTAGGTTTGAAAGTCTCATCTAAGTC 24949 32 100.0 35 ................................ TCCCATGTTTTAGGTTTGAAAGTCTCATCTAAGTC 24882 32 100.0 35 ................................ AGACTACTTTGCAAGCGATCAGTTTAGCTTTTAGC 24815 32 100.0 34 ................................ CTAAGTAAGATGAATCAAATTGGTAAAGAACTTG 24749 32 100.0 34 ................................ ATATAGCACATTAAGGCATGACCGAGTTAATATC 24683 32 100.0 34 ................................ ATATAGCACATTAAGGCATGACCGAGTTAATATC 24617 32 100.0 36 ................................ GCCTTCCTTGACCACATGTGCTTGACAGCCGGTATA 24549 32 100.0 34 ................................ AAAAGAACCAGTTCACGTGCCAACAGGTAAGTAA 24482 32 100.0 34 ................................ ATATAGCACATTAAGGCATGACCGAGTTAATATC 24416 32 100.0 35 ................................ ACTGCTAAGGGCAAACCATTGGACTTGCTTAAACA 24349 32 100.0 35 ................................ ATCAAGCTTGCCAACGGGTCGATTTTATTCTGTGA 24282 32 96.9 35 .....C.......................... ACTGCTAAGGGCAAACCATTGGACTTGCTTAAACA 24215 32 100.0 35 ................................ ATCAAGCTTGCCAACGGGTCGATTTTATTCTGTGA 24148 32 100.0 34 ................................ TTTTGAATAGATGGCATGTAAGTCTGATATAGTT 24082 32 100.0 34 ................................ TTTTGAATAGATGGCATGTAAGTCTGATATAGTT 24016 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 31 32 99.9 34 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GTGAGTGCGTGGATTGAAATAACCATTTAAACAAGAACAATCCGCAAGTACACGCGTCGCACTCCTTGTGAGTGCGTGGATTGAAATCTATTGCGTTGTTCATCGCAATAAGATGTAGGGTGTCGCACTCCTTGTGAGTGCGTGGATTGAAATTTTGACCGACTGCATACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCAAACAAGAT # Right flank : TTTAGGTCCATTGCACTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 27087-26360 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGC01000006.1 Lactobacillus helveticus strain IMAU50011 Scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 27086 32 90.6 1 .............................TGA A Deletion [27054] 27053 32 100.0 34 ................................ TTTGGAAGCCTTCCAGTTAGATTAGAGCCAACAT 26987 32 100.0 35 ................................ AGCAGCAGACTACATGGAAGACTAAAGTTTGATGC 26920 32 100.0 34 ................................ ATTTTGCAGCCCTCCTTCAATACCATTTTACTAC 26854 32 100.0 34 ................................ GTTTCATTGATATAAATATCAACGGTACCATTAT 26788 32 100.0 34 ................................ TCCTCGCAACCGTGCCATGATCCTTTCTCAGCGG 26722 32 100.0 34 ................................ ATGATGGGCTACCAGTATCCAACACATTGTCTAA 26656 32 100.0 35 ................................ GTAAGTGTTTAGTAGCACAAAAGAATTTTGCAGAA 26589 32 100.0 33 ................................ AATCGAAAGCTCAATATATCCCTGTGAAATAAC 26524 32 100.0 35 ................................ AACCATTTAAACAAGAACAATCCGCAAGTACACGC 26457 32 100.0 34 ................................ CTATTGCGTTGTTCATCGCAATAAGATGTAGGGT 26391 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 12 32 99.2 31 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG # Right flank : TTTGACCGACTGCATACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCAAACAAGATGTCGCACTCCTTGTGAGTGCGTGGATTGAAATATAAAGGTCTTTAAGACCAGTACCATTAGCAAAGGTCGCACTCCTTGTGAGTGCGTGGATTGAAATTTGGTTACGACTCTGACAAAAGCAAGAAATCAGAGTCGCACTCCTTGTGAGTGCG # Questionable array : NO Score: 8.95 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //