Array 1 50589-52429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPAP01000022.1 Listeria monocytogenes strain FSL R8-6918 contig000022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 50589 29 100.0 36 ............................. CTCTTCTCGTGTCGCTTGTTTTGCTCATTCCGCCAC 50654 29 100.0 37 ............................. ATAAATTTCGCTACTTTATCAATCATTCCAAATCTCC 50720 29 100.0 35 ............................. ATTACATTTATTAAACAATGTACAGGTTGAATTAA 50784 29 100.0 37 ............................. CTTTTTATATATTGTGCGCTTAACTTAGTTGTTAAGA 50850 29 100.0 36 ............................. TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC 50915 29 100.0 36 ............................. CCCTGTAGGATTAATATACAAAGGTTCTCGTTTTTC 50980 29 100.0 35 ............................. AATGCCGAAAGGTTCGCTTTCATTTCGCTATTCAC 51044 29 100.0 35 ............................. TTGATAACATCTTTTACTGAAAGACCTGCCTTTAA 51108 29 100.0 34 ............................. TTGGATGCAAAAACTTTAATAGCCTCTGCATCAA 51171 29 100.0 35 ............................. TTATCTAACCAACCCCGCAAAACAGTATCAACAGT 51235 29 100.0 37 ............................. TTGGTTTATCAAGATGAATGCAACACACTTGCGCCAT 51301 29 100.0 36 ............................. AAGAAACGCAGGAAGAAGCTCCACGCCGCAAGCGTC 51366 29 100.0 36 ............................. GTTGTTAATGAAGAAGGAAAAGGTATTTTGAAATTC 51431 29 100.0 35 ............................. ATTTTATTACGGCTGGTGAGTTGTCCGCCGCACTA 51495 29 100.0 34 ............................. GTCGATACAATCAACAAAGAAGCGCTAGATATGA 51558 29 100.0 35 ............................. ATGAGTGCATCATAACGTTTTGCTACATAAGAAAT 51622 29 100.0 36 ............................. AAAAGTTCAAGAATTTGAACCATCCATTTAGCCCCC 51687 29 100.0 33 ............................. ATAGACCGTTTTTTCAAAGCCATTTATCAACTG 51749 29 100.0 36 ............................. ACTTTCTGTCAACGTGACAGGCATCGGAGATTTAAT 51814 29 100.0 34 ............................. ATAGCTTATCAATCCGTTGGACAGATGAACCTTT 51877 29 96.6 35 ..................A.......... TTCGTTAGCATTAACGCTGAAAATCAACTTCATGT 51941 29 96.6 37 ................T............ TTTGTTCGATTTCGCTAATTTGGTAGTTTGTGACTTC 52007 29 100.0 37 ............................. GTGGTTGGCAAGAAACCTTTTTTGGCAGGTAATTTTT 52073 29 100.0 37 ............................. AAAATAATCATTAATGCAAACGCAATACAAATGACTG 52139 29 100.0 38 ............................. GTGGTAACAGCGTTCTTATTTCCTGGCGGAGCGCTTCC 52206 29 100.0 34 ............................. TTGGTCCTTCCTATCCCTCCACCTCTTTGTTTTT 52269 29 100.0 37 ............................. TCGTTCGACGGCTTAGACAACCATCACGCTTCTTTAA 52335 29 100.0 36 ............................. CCTAATACACCTAAACTACTCTTATATATAAAAACA 52400 29 93.1 0 .......................A....C | C [52423] ========== ====== ====== ====== ============================= ====================================== ================== 29 29 99.5 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAAGCGTAAAATAGAGCGT # Right flank : CGTCTTCTTAAAATTTAAACCCAAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCTTGCAACACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTTTTATTCGCAAGTAATTCCTTCTCCACGCCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //