Array 1 434563-435688 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPJ01000045.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SALB-46 NODE_132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 434563 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 434624 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 434685 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 434746 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 434807 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 434868 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 434929 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 434990 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 435051 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 435112 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 435173 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 435234 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 435295 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 435356 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 435417 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 435478 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 435539 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 435600 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 435661 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 451947-453555 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPJ01000045.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SALB-46 NODE_132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 451947 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 452008 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 452069 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 452130 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 452203 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 452264 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 452325 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 452386 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 452447 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 452508 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 452569 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 452630 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 452691 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 452752 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 452813 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 452874 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 452935 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 452996 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 453099 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 453160 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 453221 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 453282 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 453343 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 453404 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 453465 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 453526 29 96.6 0 A............................ | A [453552] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //