Array 1 103146-105155 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJELY010000018.1 Acinetobacter baumannii strain MRSN1656 MRSN1656_contig00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 103146 30 96.7 30 .............................C ATCAAAGGCTTTGAGGGTAAGCGCCTTTGG 103206 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 103266 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 103326 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 103386 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 103446 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 103506 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 103566 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 103626 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 103686 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 103746 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 103806 30 96.7 30 ............................A. GGGCCGCAACCATACGGTCTATGACTTCCA 103866 30 96.7 30 .............................C ATGATCATAGCCCTTATAGATATCGTATTT 103926 30 96.7 30 ............................C. GCGAAAGCGGGGTTTTTTATTGCCTGAAAT 103986 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 104046 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 104106 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 104166 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 104226 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 104286 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 104346 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 104406 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 104466 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 104526 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 104586 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 104646 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 104706 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 104766 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 104826 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 104886 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 104946 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 105006 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 105066 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 105126 30 96.7 0 .................T............ | ========== ====== ====== ====== ============================== ============================== ================== 34 30 96.8 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAAA # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2-1233 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJELY010000019.1 Acinetobacter baumannii strain MRSN1656 MRSN1656_contig00019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2 30 96.7 30 .................T............ CTCATCGTGAAGGTTTTGCAAATATGCCTT 62 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 122 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 182 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 243 30 96.7 30 ............................A. AGCACGAGCAAGTTCTTGAGATGCCAAAAA 303 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 363 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 423 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 483 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 543 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 603 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 663 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 724 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 784 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 844 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 904 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 964 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 1024 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 1084 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 1144 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 1204 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 21 30 93.5 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : AG # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //