Array 1 5272-5564 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIQS010000044.1 Anaerostipes hadrus strain MSK.11.19 NODE_44_length_16698_cov_200.343, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5272 30 100.0 36 .............................. AAATTCTCGATTTACGCATATTTTTTATGCACATTG 5338 30 100.0 35 .............................. TATAGAAAATCCGATTGAAATTTTTTTTGATCTTA 5403 30 100.0 35 .............................. TTGTTCTTCACTCTTTTTTTAAATAATTTTTCTCT 5468 30 96.7 37 ...............G.............. AACACACCGCAGCTAATTCTTTAAAGATTCCCATTGC 5535 30 83.3 0 A........................TTTT. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 96.0 36 GTTGAATAATAACATAGGATGTATTGAAAT # Left flank : AAATAGAGGACTTGTAAACCGAACAGGATTAGCTGTTTTAAGACATACAAGAACAGCTTCTACTTTAACAGAATTTGGATTTATTACGAACAAAGCAGAAGCAGCATCTATGAAAGCAAACACAGACAAATATGGAAAAGCAATGTTTAATAGTGTTGTAAAAATGTTTCAAACAAACCAATCAAAAAGATAAGAATCATAAAAGAGGAACAGGTATAAATGCCAGTTCTTCTTTTTTTTGACCATTTTGGCGAACTCAACGAAATGGTCAGTTGCATTTTTTATATGTGATTTTTTTTCTGATGAAAATCTCTCATATTTATAATAGAAGAAAAATTCTTACCAAGTGATTTTTTGAAAAAGTCTGTCAAATGGCGTAAATACGTGGTTTCTTACGAATAGCTGATTTTCAATGGAATGGTTGGTAAAATGTTGGAAAAATGGCTTAAGATCGTGATTTATAGAGATCAGTAAGATACAAAAATGACGGTTTTTCGTTG # Right flank : TATATGTGAAAATTCTTTCTTAAAATTTCTCTCATATTTATTATGAAAAAAAAACAACACAGGCAAAAAAGGAGAGTATATATGTTACAAGATAATATTATTTTAAAAAAAGTAATCGTTCATGTGGCTCAGCCATCCATTGGAAAATATAATGCATCCGAAGAATGTATTGACTTGGGAACAGATTTTACGGAATTTTTAAAGAAGCAGATAGAAAAGATGACAGAATCTGATGATGTTGTAAAAATCGATCTGAATCATGCTGCAATTACCATTAATTTGGATAATTTTGAAAAAAATACAGCCAAATTAGGAGAAGAACTCTATGATATCTGTTGTGATAGTGTCAAAATCCCAGATGCAGATTTAGTATTCCTTACTTTTACTAGTGAAGGAACTGATTATTTTGGAATGTTGAAAATGGATTATAAACCATTCTATGGACATCAGAAAGGAAGCACAGAGGTTGTCACAAAACAGGTTATGACTAATACATGTAA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAATAACATAGGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 6149-5163 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIQS010000021.1 Anaerostipes hadrus strain MSK.11.19 NODE_21_length_58971_cov_181.389, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 6148 30 100.0 34 .............................. TAAATGGCTGGTACAAGCCTTCTAATAAAATTTC 6084 30 100.0 35 .............................. TTATTAAAAAAACCTACAATCATTCTTACATATTT 6019 30 100.0 36 .............................. GGCAACAGGTAATTGGATTTACGATTTGACCGATGA 5953 30 96.7 30 ...............T.............. AATCCTTACTAAAATTAGGATTTTTATGCT 5893 30 93.3 35 ...............G.A............ TCCTACATATTTACTATGTCACTTTTAGATTTTAC 5828 30 100.0 37 .............................. TTGTCTTTTAATATCTTTTCACCAAATGTTTTTGGAT 5761 30 93.3 35 ...............G.A............ TTTTGATAATGTAGCTGAGATTATGACGGATTTAG 5696 30 93.3 35 ...............GT............. ATGTATGAAAATGGAGAACACATTCCTCGTGATGT 5631 30 93.3 37 ...............GT............. TGACAAAACTGTGTTAATGATTCCTCAATTCTTGCCT 5564 30 90.0 36 .........C.....GT............. ACTCCTTTCTATATAACATAATTGTAGCATAATTAT 5498 30 96.7 35 ................A............. GAGGTTCCTGTTTTATGGAATTGTACGAAAATTGC 5433 30 93.3 29 ...............G.A............ GATATGGAAGAAATCAAGTACGATGCTCT 5374 30 80.0 36 ...A...........GA....C......TC ATAAACGCATTGGCATTGGATATCGCCAGATTATCG 5308 30 93.3 25 .........C......T............. TATAGTACCTCCGTAACAACTATCA Deletion [5254] 5253 30 93.3 31 ..............C..A............ TAAATCCCTGGCGTAGCGACGTAATAAATCT 5192 30 90.0 0 .........C............G......A | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 94.2 34 GTTGAATAATAACATAGGATGTATTGAAAT # Left flank : AAAAATTAGCGGATCATATGATTCATAGGCGCTGTGTTTACATTCCTTATTTAGGAAAGAATGATCATCCTGCGGATATTCATGATATTTCATACGTTGAAATTTCTGAAAACAAAGAGTTAGGCTGCATGATCAACAGTTTAAGTCCTTATAATGGAATTAACTTCGATATGTCAGAAGCTACATTTAAATATGAAGAGTTTCTTCCGATCCGTCTGGACTCAGAACTTAATCAGCACGAATTACAGAAATTTATTTTAACAGATGCGATCGCAGAAGACTCAAAAGTGACTGTTTATAAAGCAGAAGATAAAAATATCGTTTTTTATTAAAAAAGAATTACCAAGTGATTTTTTGAAAAAGTCTGTCAAATGGCGTAAATACGTGGTTTCTTACGAATAGCTGATTTTCAATGGAATGGTTGGTAAAATGTTGGAAAAATGGCTTAAGATCGTGATTTATAGAGATCAGTAAGATACAAGAATGACGGTTTTTCGTTG # Right flank : AAATAATCGCAAAATTTTACGATTGAATTTGTGATTAAAAATACGCATAATCTCATTTTTATATGTGAAATTTATTTTCCTTCATATCTTTCATATTTGTTATGTAAAAACATGACGAATAGAGAAATAAGGAGGATATGAACATGACAAAAGTAGATAATCCAATCAAATTAGAGAGTTTGATCTTAGCAGTCACTGGAATTCTTTTATATCATCTTAGTATGACGTCCTTTGCATTAACAATGATTTTCTTAATTGCAGGAATCGTAGAATTATTTGATGATTTTACATCAGGTGAAGATACCGCTTTTTACAGTTTCTTTTTTGTAAGAATTCTGAAATTAAGAGGATTTGACTGTGTCGGTGTTGCAAATGACGAGAATGATACATATTTTTTGTATCAGGATCAGACAAGAAAAAAACTATATTGTTTTAAGCAGGAACCAGAAGAATTTGGACCCTATGATAAACGATATGTAGGTATGATTAAAAATCAGGCG # Questionable array : NO Score: 8.32 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAATAACATAGGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //